Glyma01g42880 - SoyBase

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Report for Sequence Feature Glyma01g42880

Feature Type:	gene_model
Chromosome:	Gm01
Start:	54000197
stop:	54003296
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g42880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52905	AT	Annotation by Michelle Graham. TAIR10: Polynucleotidyl transferase, ribonuclease H-like superfamily protein \| chr3:19614142-19615471 REVERSE LENGTH=170	SoyBase	E_val: 1.00E-57	ISS
PF03652	PFAM	Uncharacterised protein family (UPF0081)	JGI		ISS
UniRef100_I1JA71	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JA71_SOYBN	SoyBase	E_val: 2.00E-120	ISS
UniRef100_Q9M3H7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hypothetical 19.6 kDa protein n=1 Tax=Cicer arietinum RepID=Q9M3H7_CICAR	SoyBase	E_val: 4.00E-92	ISS

Expression Patterns of Glyma01g42880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g42880 not represented in the dataset	Glyma01g42880 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g42880

Paralog	Evidence	Comments
Glyma11g02590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g42880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g219700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g42880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g42880

Limit To All Plant Sequences

>Glyma01g42880.5   sequence type=transcript   gene model=Glyma01g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAAAATGATTATTTATGTTCTTATAATAAAAGAATAAAGAAGTCGTTGTGGTTCATAGTTGTTACTTGCCACGACCCGCGACGGCGGTGGTGTACGAAGAGAGCGAGAGCAGGAGGTGAGCGGCACTCTCTCCGACTACAGATATCTTCACCACAACAGATAAAATGAGGTACATGAAGCCCTTGCCATTGTTTCATGATTTGAAGAATACAACTCCTCAGCGCGGAAGGTTGCTTGGTTTGGATGTCGGGGATAAATATGTTGGCCTTGCTCTTTCTGACTTTGATAACAATATTGCTTCACCTTTCAACGTTCTCGTCAGGAAGAAGACAAATATTAGTTTAATGGCTTCTGATTTAGAGAGTCTGATTGCTAAATATTCCTTGAAGGGCTTTGTTATTGGCATCCCTTTTGACAAACATCAAGTGTCTTCTGATGCTATGCAAGTGAAGGTCTTCATTGATAACCTCTGTAGAACAAAAATGCTTGAAGGTGTAAAGTATACATACTGGAATGAGAGCTTCACGTCAAAGAATGTGGAATTGCTGTTAAAGCCTTTGAACTTGAATCATCCAGTTCTCTCCAAGACTATGCTAGACAAGTTTGCTGCAGTAGGAATACTTCAGGGGTACCTGGATTTTGTCAACAGGAAAATGAAGCTGAAAGCAACGGAGTAAGGAACTCTTAATAATATTATTTTTCAAGCCCGCTAATGTTAGTCTCAAACTCTTTTATACCCTCTGTCTTTACATGATTGCTACTTCTCAAAACTAGTAATTTGCTATAGTGGCTCTTTTCCTTTTCACTTTTATGTATCTTTTCTCTTTATAAGTTTCTCAATATTTGACAACTTAGTGCTCTTTCTATACAGGTGAAGGCATGCATCAGAAATCACAACTAGATACCTCTGAGGTTGGTTGGAGGACAGTATAATGGATTTTATATTTTCCTATATTTGCATTCTCTATTCTGTAGCTAAAATGGAATTAGTCATGTTACCGTTCAGTTTGATTAGGTTTAGTTGACAACCTTAATGAAAAAGTTAAGTGTGGGGACTTAGTTAATTCTTCATTATGATTTGATAAGAAGAGAAACTTAGGTCTTGTATCTTCCTTTTCAATTCCAGTAGTAATTATTAACAGAGGTTAGTAATGCAATCTGTACAGACTACCGAGTTTTATCTACAAACTGAAAACAAAACTGTAGACTACATAACTTACTTGGATTAATTTGTTGCATTTTTCTTGCACTAAACATTGAATTCATTTGTGAAATTCAATGCTTTATATGATTGATTGAATTGAGAGTAAAAGTAAAAACGTTTTCTTTAATACTTATGATTTGTCTTTTGGCATGATGATATATTTTCTGAAATACTTGTACTTGTAACTTTCATCACTGTTCACTGGAATTGTCTTTGTTTTTTGTTACATTGAGGTATATTAAGCACCAAAGTAGGGGAAGGGAAAAGTTGCTCAATGGGAGATCTAACATCAACATCACATTCATATTTTGTAGACTTGAGCTGGTATCAATTTAGATGCAAGCAACGTGCTGGCTAGATTCATTTAATTTCATTGGATAATCATAAGATTTTGGTTAAACTGTTAGAGGCATGTAGAAAATTCCCACGTTAAATGTGATTTTGTAGATAAAATCAAAAGAGACAGAAAATCCTCGATTTTAATTTATTCTTTGGAATAGATTGTCAGAAAATTTGTATGAGAGATCAGGCATCCAATTATTTTATCGAAGGCACTGTTCGTTCTTTTTGCAACTCCATTATGCTAAAAAGCGTCTTTGGTTCTCAAG

>Glyma01g42880.6   sequence type=transcript   gene model=Glyma01g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAAAATGATTATTTATGTTCTTATAATAAAAGAATAAAGAAGTCGTTGTGGTTCATAGTTGTTACTTGCCACGACCCGCGACGGCGGTGGTGTACGAAGAGAGCGAGAGCAGGAGGTGAGCGGCACTCTCTCCGACTACAGATATCTTCACCACAACAGATAAAATGAGGTACATGAAGCCCTTGCCATTGTTTCATGATTTGAAGAATACAACTCCTCAGCGCGGAAGGTTGCTTGGTTTGGATGTCGGGGATAAATATGTTGGCCTTGCTCTTTCTGACTTTGATAACAATATTGCTTCACCTTTCAACGTTCTCGTCAGGAAGAAGACAAATATTAGTTTAATGGCTTCTGATTTAGAGAGTCTGATTGCTAAATATTCCTTGAAGGGCTTTGTTATTGGCATCCCTTTTGACAAACATCAAGTGTCTTCTGATGCTATGCAAGTGAAGGTCTTCATTGATAACCTCTGTAGAACAAAAATGCTTGAAGGTGTAAAGTATACATACTGGAATGAGAGCTTCACGTCAAAGAATGTGGAATTGCTGTTAAAGCCTTTGAACTTGAATCATCCAGTTCTCTCCAAGACTATGCTAGACAAGTTTGCTGCAGTAGGAATACTTCAGGGGTACCTGGATTTTGTCAACAGGAAAATGAAGCTGAAAGCAACGGAGTGAAGGCATGCATCAGAAATCACAACTAGATACCTCTGAGGTTGGTTGGAGGACAGTATAATGGATTTTATATTTTCCTATATTTGCATTCTCTATTCTGTAGCTAAAATGGAATTAGTCATGTTACCGTTCAGTTTGATTAGGTTTAGTTGACAACCTTAATGAAAAAGTTAAGTGTGGGGACTTAGTTAATTCTTCATTATGATTTGATAAGAAGAGAAACTTAGGTCTTGTATCTTCCTTTTCAATTCCAGTAGTAATTATTAACAGAGGTTAGTAATGCAATCTGTACAGACTACCGAGTTTTATCTACAAACTGAAAACAAAACTGTAGACTACATAACTTACTTGGATTAATTTGTTGCATTTTTCTTGCACTAAACATTGAATTCATTTGTGAAATTCAATGCTTTATATGATTGATTGAATTGAGAGTAAAAGTAAAAACGTTTTCTTTAATACTTATGATTTGTCTTTTGGCATGATGATATATTTTCTGAAATACTTGTACTTGTAACTTTCATCACTGTTCACTGGAATTGTCTTTGTTTTTTGTTACATTGAGGTATATTAAGCACCAAAGTAGGGGAAGGGAAAAGTTGCTCAATGGGAGATCTAACATCAACATCACATTCATATTTTGTAGACTTGAGCTGGTATCAATTTAGATGCAAGCAACGTGCTGGCTAGATTCATTTAATTTCATTGGATAATCATAAGATTTTGGTTAAACTGTTAGAGGCATGTAGAAAATTCCCACGTTAAATGTGATTTTGTAGATAAAATCAAAAGAGACAGAAAATCCTCGATTTTAATTTATTCTTTGGAATAGATTGTCAGAAAATTTGTATGAGAGATCAGGCATCCAATTATTTTATCGAAGGCACTGTTCGTTCTTTTTGCAACTCCATTATGCTAAAAAGCGTCTTTGGTTCTCAAG

>Glyma01g42880.7   sequence type=transcript   gene model=Glyma01g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAAAATGATTATTTATGTTCTTATAATAAAAGAATAAAGAAGTCGTTGTGGTTCATAGTTGTTACTTGCCACGACCCGCGACGGCGGTGGTGTACGAAGAGAGCGAGAGCAGGAGGTGAGCGGCACTCTCTCCGACTACAGATATCTTCACCACAACAGATAAAATGAGGTACATGAAGCCCTTGCCATTGTTTCATGATTTGAAGAATACAACTCCTCAGCGCGGAAGGTTGCTTGGTTTGGATGTCGGGGATAAATATGTTGGCCTTGCTCTTTCTGACTTTGATAACAATATTGCTTCACCTTTCAAGAAGAAGACAAATATTAGTTTAATGGCTTCTGATTTAGAGAGTCTGATTGCTAAATATTCCTTGAAGGGCTTTGTTATTGGCATCCCTTTTGACAAACATCAAGTGTCTTCTGATGCTATGCAAGTGAAGGTCTTCATTGATAACCTCTGTAGAACAAAAATGCTTGAAGGTGTAAAGTATACATACTGGAATGAGAGCTTCACGTCAAAGAATGTGGAATTGCTGTTAAAGCCTTTGAACTTGAATCATCCAGTTCTCTCCAAGACTATGCTAGACAAGTTTGCTGCAGTAGGAATACTTCAGGGGTACCTGGATTTTGTCAACAGGAAAATGAAGCTGAAAGCAACGGAGTAAGGAACTCTTAATAATATTATTTTTCAAGCCCGCTAATGTGAAGGCATGCATCAGAAATCACAACTAGATACCTCTGAGGTTGGTTGGAGGACAGTATAATGGATTTTATATTTTCCTATATTTGCATTCTCTATTCTGTAGCTAAAATGGAATTAGTCATGTTACCGTTCAGTTTGATTAGGTTTAGTTGACAACCTTAATGAAAAAGTTAAGTGTGGGGACTTAGTTAATTCTTCATTATGATTTGATAAGAAGAGAAACTTAGGTCTTGTATCTTCCTTTTCAATTCCAGTAGTAATTATTAACAGAGGTTAGTAATGCAATCTGTACAGACTACCGAGTTTTATCTACAAACTGAAAACAAAACTGTAGACTACATAACTTACTTGGATTAATTTGTTGCATTTTTCTTGCACTAAACATTGAATTCATTTGTGAAATTCAATGCTTTATATGATTGATTGAATTGAGAGTAAAAGTAAAAACGTTTTCTTTAATACTTATGATTTGTCTTTTGGCATGATGATATATTTTCTGAAATACTTGTACTTGTAACTTTCATCACTGTTCACTGGAATTGTCTTTGTTTTTTGTTACATTGAGGTATATTAAGCACCAAAGTAGGGGAAGGGAAAAGTTGCTCAATGGGAGATCTAACATCAACATCACATTCATATTTTGTAGACTTGAGCTGGTATCAATTTAGATGCAAGCAACGTGCTGGCTAGATTCATTTAATTTCATTGGATAATCATAAGATTTTGGTTAAACTGTTAGAGGCATGTAGAAAATTCCCACGTTAAATGTGATTTTGTAGATAAAATCAAAAGAGACAGAAAATCCTCGATTTTAATTTATTCTTTGGAATAGATTGTCAGAAAATTTGTATGAGAGATCAGGCATCCAATTATTTTATCGAAGGCACTGTTCGTTCTTTTTGCAACTCCATTATGCTAAAAAGCGTCTTTGGTTCTCAAG

Coding sequences of Glyma01g42880

Limit To All Plant Sequences

>Glyma01g42880.4   sequence type=CDS   gene model=Glyma01g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTACATGAAGCCCTTGCCATTGTTTCATGATTTGAAGAATACAACTCCTCAGCGCGGAAGGTTGCTTGGTTTGGATGTCGGGGATAAATATGTTGGCCTTGCTCTTTCTGACTTTGATAACAATATTGCTTCACCTTTCAACGTTCTCGTCAGGAAGAAGACAAATATTAGTTTAATGGCTTCTGATTTAGAGAGTCTGATTGCTAAATATTCCTTGAAGGGCTTTGTTATTGGCATCCCTTTTGACAAACATCAAGTGTCTTCTGATGCTATGCAAGTGAAGGTCTTCATTGATAACCTCTGTAGAACAAAAATGCTTGAAGGTGTAAAGTATACATACTGGAATGAGAGCTTCACGTCAAAGAATGTGGAATTGCTGTTAAAGCCTTTGAACTTGAATCATCCAGTTCTCTCCAAGACTATGCTAGACAAGTTTGCTGCAGTAGGAATACTTCAGGGGTACCTGGATTTTGTCAACAGGAAAATGAAGCTGAAAGCAACGGAGTAA

>Glyma01g42880.5   sequence type=CDS   gene model=Glyma01g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTACATGAAGCCCTTGCCATTGTTTCATGATTTGAAGAATACAACTCCTCAGCGCGGAAGGTTGCTTGGTTTGGATGTCGGGGATAAATATGTTGGCCTTGCTCTTTCTGACTTTGATAACAATATTGCTTCACCTTTCAACGTTCTCGTCAGGAAGAAGACAAATATTAGTTTAATGGCTTCTGATTTAGAGAGTCTGATTGCTAAATATTCCTTGAAGGGCTTTGTTATTGGCATCCCTTTTGACAAACATCAAGTGTCTTCTGATGCTATGCAAGTGAAGGTCTTCATTGATAACCTCTGTAGAACAAAAATGCTTGAAGGTGTAAAGTATACATACTGGAATGAGAGCTTCACGTCAAAGAATGTGGAATTGCTGTTAAAGCCTTTGAACTTGAATCATCCAGTTCTCTCCAAGACTATGCTAGACAAGTTTGCTGCAGTAGGAATACTTCAGGGGTACCTGGATTTTGTCAACAGGAAAATGAAGCTGAAAGCAACGGAGTAA

>Glyma01g42880.6   sequence type=CDS   gene model=Glyma01g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTACATGAAGCCCTTGCCATTGTTTCATGATTTGAAGAATACAACTCCTCAGCGCGGAAGGTTGCTTGGTTTGGATGTCGGGGATAAATATGTTGGCCTTGCTCTTTCTGACTTTGATAACAATATTGCTTCACCTTTCAACGTTCTCGTCAGGAAGAAGACAAATATTAGTTTAATGGCTTCTGATTTAGAGAGTCTGATTGCTAAATATTCCTTGAAGGGCTTTGTTATTGGCATCCCTTTTGACAAACATCAAGTGTCTTCTGATGCTATGCAAGTGAAGGTCTTCATTGATAACCTCTGTAGAACAAAAATGCTTGAAGGTGTAAAGTATACATACTGGAATGAGAGCTTCACGTCAAAGAATGTGGAATTGCTGTTAAAGCCTTTGAACTTGAATCATCCAGTTCTCTCCAAGACTATGCTAGACAAGTTTGCTGCAGTAGGAATACTTCAGGGGTACCTGGATTTTGTCAACAGGAAAATGAAGCTGAAAGCAACGGAGTGA

>Glyma01g42880.7   sequence type=CDS   gene model=Glyma01g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTACATGAAGCCCTTGCCATTGTTTCATGATTTGAAGAATACAACTCCTCAGCGCGGAAGGTTGCTTGGTTTGGATGTCGGGGATAAATATGTTGGCCTTGCTCTTTCTGACTTTGATAACAATATTGCTTCACCTTTCAAGAAGAAGACAAATATTAGTTTAATGGCTTCTGATTTAGAGAGTCTGATTGCTAAATATTCCTTGAAGGGCTTTGTTATTGGCATCCCTTTTGACAAACATCAAGTGTCTTCTGATGCTATGCAAGTGAAGGTCTTCATTGATAACCTCTGTAGAACAAAAATGCTTGAAGGTGTAAAGTATACATACTGGAATGAGAGCTTCACGTCAAAGAATGTGGAATTGCTGTTAAAGCCTTTGAACTTGAATCATCCAGTTCTCTCCAAGACTATGCTAGACAAGTTTGCTGCAGTAGGAATACTTCAGGGGTACCTGGATTTTGTCAACAGGAAAATGAAGCTGAAAGCAACGGAGTAA

Predicted protein sequences of Glyma01g42880

Limit To All Plant Sequences

>Glyma01g42880.4   sequence type=predicted peptide   gene model=Glyma01g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRYMKPLPLFHDLKNTTPQRGRLLGLDVGDKYVGLALSDFDNNIASPFNVLVRKKTNISLMASDLESLIAKYSLKGFVIGIPFDKHQVSSDAMQVKVFIDNLCRTKMLEGVKYTYWNESFTSKNVELLLKPLNLNHPVLSKTMLDKFAAVGILQGYLDFVNRKMKLKATE*

>Glyma01g42880.5   sequence type=predicted peptide   gene model=Glyma01g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRYMKPLPLFHDLKNTTPQRGRLLGLDVGDKYVGLALSDFDNNIASPFNVLVRKKTNISLMASDLESLIAKYSLKGFVIGIPFDKHQVSSDAMQVKVFIDNLCRTKMLEGVKYTYWNESFTSKNVELLLKPLNLNHPVLSKTMLDKFAAVGILQGYLDFVNRKMKLKATE*

>Glyma01g42880.6   sequence type=predicted peptide   gene model=Glyma01g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRYMKPLPLFHDLKNTTPQRGRLLGLDVGDKYVGLALSDFDNNIASPFNVLVRKKTNISLMASDLESLIAKYSLKGFVIGIPFDKHQVSSDAMQVKVFIDNLCRTKMLEGVKYTYWNESFTSKNVELLLKPLNLNHPVLSKTMLDKFAAVGILQGYLDFVNRKMKLKATE*

>Glyma01g42880.7   sequence type=predicted peptide   gene model=Glyma01g42880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRYMKPLPLFHDLKNTTPQRGRLLGLDVGDKYVGLALSDFDNNIASPFKKKTNISLMASDLESLIAKYSLKGFVIGIPFDKHQVSSDAMQVKVFIDNLCRTKMLEGVKYTYWNESFTSKNVELLLKPLNLNHPVLSKTMLDKFAAVGILQGYLDFVNRKMKLKATE*

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