Glyma01g42740 - SoyBase

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Report for Sequence Feature Glyma01g42740

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53934120
stop:	53938365
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g42740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23850	AT	Annotation by Michelle Graham. TAIR10: Arabidopsis thaliana protein of unknown function (DUF821) \| chr5:8038126-8040741 FORWARD LENGTH=542	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2458	KOG	Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif	JGI		ISS
PTHR12203	Panther	ENDOPLASMIC RETICULUM-RESIDENT KDEL PROTEIN	JGI		ISS
PTHR12203:SF11	Panther		JGI		ISS
PF05686	PFAM	Arabidopsis thaliana protein of unknown function (DUF821)	JGI		ISS
UniRef100_G7KDD6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: KTEL motif-containing protein n=1 Tax=Medicago truncatula RepID=G7KDD6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JA60	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JA60_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g42740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g42740 not represented in the dataset	Glyma01g42740 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g42740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g218400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g42740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g42740

Limit To All Plant Sequences

>Glyma01g42740.2   sequence type=transcript   gene model=Glyma01g42740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGATTTTTCGTACACGTTAAGACGATCATTAATTTAAAATAAATGAAAAGGATAAGCATTGATTACGACAACATAGAAACACATTAATTGCTGTTTGTATGATAAAAAAAATCACAATCAACATTTTGAAAACCAAGTCGTCACAAGGGTTTTGAAATCAAACCAACTGGAGACTATTCTACATTTTATAATTGAACGGTGGGTAGGTTCGTAGGATGCATAATTCTGTGTGGCACGCTGCTAACAGCAACACGTTGGTGGATTTTGACCCTAAAATCTCTTTATCATCATGTCATGATGCTGTTTGTTGCGATGTGCTTAATTAATATCAATCAATAATTGTTGTCGGAATATACAGTAGGATGATGCAGAGATTCATAACTGAAAGGTCGAAGAAACAGTTAACAACGGATTCCACTCTTGTAAAAAAGGCTCCAGTATCTACTTACACTCCTCTGCTACTCCTTCTCATCCTCCTCACCACTGCCTTTGTCTCTTCCCTCTGGTCTACGCTTTCTACGACTAACACTAAACCGACGATTATTGGCAAGAAAACCTCAGTGGCAAATGTTGTTTCTGCAAAGGATAGCAAAAGCGAAGAAAAATCTAGTAGCAGGAAAAGGTTTCAATTAGAAGCGACATTAAACTGCAGCAATAATGGGAAGCAAAGATGTACAAGTTATCCGACAAGTGGAGTGTTTGAAAGGGAGGAGGGAGGGGTGTGTCCGGAGTACTTCCGGTGGATCCACGAGGATGTTGGGGCGTGGAAAGAGAGAGGGATAAGCAGGGAGATGGTGGAGAGAGCGAAGAAGAGTGCACATTTTAGGTTAGTAGTGAAGAGAGGAAGGGTGTACGTGGAGAGGTATAAGAAATCGATACAGACACGTGAGGTGTTCACGATGTGGGGCATTGTGCAGCTTCTGAGGAAGTACCCAGGTAAAGTGGCAGACCTTGAGCTCATGTTTGATTGTGATGACTTACCAGTAATCCGTGGGAGCAGCCTGGCTGGGCCTCCACCCCTTTTCCGTTACTGCGGTGACCGCTGGACGGACGACATTGTCTTCCCTGATTGGTCCTTCTGGGGATGGGCTGAGATTAATATAAGGCCTTGGGAACATGTGTTGAAGGAGATGGAAAAGGGCAATAGAAGGATTAAATGGAATGACAGAGAACCATATGCCTATTGGAAGGGAAACCCTTTTGTTGCCGAAACCAGACAAGATCTCCTCAAATGTAATGTTTCAACCACCCAAGACTGGAATGCTCGTTTATATGTGCAGGATTGGATTCAAGAATCTCAACAAGGATTCAATAACTCAAACTTGGCAAGTCAATGCACACATAGATACAAGATATATATTGAAGGATATGCGTGGTCTGTGAGTGAGAAATACATCCTAGCCTGTGATTCCGTAACGCTAATGGTGAAGCCTCGTTTCTATGATTTCTTCATAAGAAGCCTGCAGCCAATGCAGCATTATTGGCCTATAAGGGACAAGGGCAAGTGCAAATCCATCAAACATGCAGTTGATTGGGGTAATAATCATAAGGAAGAGGCACAAAAAATTGGTAAAGCAGCAAGCAAGTTTATTCAAGAAGAGCTAAAGATGGATTACGTGTATGACTACATGTTCCATTTGCTAAATGAATATGCAAAGCTTCTAAAGTTTGAGCCAAGAGTGCCAGAAGGAGCTGAGGAGCTGTGTGTGGAGGCCATGGCATGCACAAGAAGTGGGTTAGAGAGGAAGTTTATGACTGAATCAATGGTTAGGGAGCCTTCAACAAAAGCCCCGTGCTCATTGCCTCCTCCGTTGGAGCCAACGTCGCGGAGGGTGTTTTATGCCAACAAACTAAATTCAATTAGGAGAGTTGAGAGGTGGGAAGATAACTATTGGAAAAACAGCACTCAACAGTTGCATACACGCATTTGAATTAATTAAAACTCAACAATTAGCAGCATGCCTTATTAACACAAGGTATGCTACGCACACTAGTTAGTCACCCTCTGAGAAAGAATTCTGGTAATGCAAAGCCTACAAAATATAAATTATGCGTTCAGGATTTAAGTTTGGATTTAGGATATTTAGAAGAGACTGTGAATCTAGACAGAATTTGTTCACATTTATTTATTTATTTATTTTCCAGGTGTATCAATCCCTAATCAATATCCATTCATTTTAAAATCAAAAA

Coding sequences of Glyma01g42740

Limit To All Plant Sequences

>Glyma01g42740.1   sequence type=CDS   gene model=Glyma01g42740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCAGAGATTCATAACTGAAAGGTCGAAGAAACAGTTAACAACGGATTCCACTCTTGTAAAAAAGGCTCCAGTATCTACTTACACTCCTCTGCTACTCCTTCTCATCCTCCTCACCACTGCCTTTGTCTCTTCCCTCTGGTCTACGCTTTCTACGACTAACACTAAACCGACGATTATTGGCAAGAAAACCTCAGTGGCAAATGTTGTTTCTGCAAAGGATAGCAAAAGCGAAGAAAAATCTAGTAGCAGGAAAAGGTTTCAATTAGAAGCGACATTAAACTGCAGCAATAATGGGAAGCAAAGATGTACAAGTTATCCGACAAGTGGAGTGTTTGAAAGGGAGGAGGGAGGGGTGTGTCCGGAGTACTTCCGGTGGATCCACGAGGATGTTGGGGCGTGGAAAGAGAGAGGGATAAGCAGGGAGATGGTGGAGAGAGCGAAGAAGAGTGCACATTTTAGGTTAGTAGTGAAGAGAGGAAGGGTGTACGTGGAGAGGTATAAGAAATCGATACAGACACGTGAGGTGTTCACGATGTGGGGCATTGTGCAGCTTCTGAGGAAGTACCCAGGTAAAGTGGCAGACCTTGAGCTCATGTTTGATTGTGATGACTTACCAGTAATCCGTGGGAGCAGCCTGGCTGGGCCTCCACCCCTTTTCCGTTACTGCGGTGACCGCTGGACGGACGACATTGTCTTCCCTGATTGGTCCTTCTGGGGATGGGCTGAGATTAATATAAGGCCTTGGGAACATGTGTTGAAGGAGATGGAAAAGGGCAATAGAAGGATTAAATGGAATGACAGAGAACCATATGCCTATTGGAAGGGAAACCCTTTTGTTGCCGAAACCAGACAAGATCTCCTCAAATGTAATGTTTCAACCACCCAAGACTGGAATGCTCGTTTATATGTGCAGGATTGGATTCAAGAATCTCAACAAGGATTCAATAACTCAAACTTGGCAAGTCAATGCACACATAGATACAAGATATATATTGAAGGATATGCGTGGTCTGTGAGTGAGAAATACATCCTAGCCTGTGATTCCGTAACGCTAATGGTGAAGCCTCGTTTCTATGATTTCTTCATAAGAAGCCTGCAGCCAATGCAGCATTATTGGCCTATAAGGGACAAGGGCAAGTGCAAATCCATCAAACATGCAGTTGATTGGGGTAATAATCATAAGGAAGAGGCACAAAAAATTGGTAAAGCAGCAAGCAAGTTTATTCAAGAAGAGCTAAAGATGGATTACGTGTATGACTACATGTTCCATTTGCTAAATGAATATGCAAAGCTTCTAAAGTTTGAGCCAAGAGTGCCAGAAGGAGCTGAGGAGCTGTGTGTGGAGGCCATGGCATGCACAAGAAGTGGGTTAGAGAGGAAGTTTATGACTGAATCAATGGTTAGGGAGCCTTCAACAAAAGCCCCGTGCTCATTGCCTCCTCCGTTGGAGCCAACGTCGCGGAGGGTGTTTTATGCCAACAAACTAAATTCAATTAGGAGAGTTGAGAGGTGGGAAGATAACTATTGGAAAAACAGCACTCAACAGTTGCATACACGCATTTGA

>Glyma01g42740.2   sequence type=CDS   gene model=Glyma01g42740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGCAGAGATTCATAACTGAAAGGTCGAAGAAACAGTTAACAACGGATTCCACTCTTGTAAAAAAGGCTCCAGTATCTACTTACACTCCTCTGCTACTCCTTCTCATCCTCCTCACCACTGCCTTTGTCTCTTCCCTCTGGTCTACGCTTTCTACGACTAACACTAAACCGACGATTATTGGCAAGAAAACCTCAGTGGCAAATGTTGTTTCTGCAAAGGATAGCAAAAGCGAAGAAAAATCTAGTAGCAGGAAAAGGTTTCAATTAGAAGCGACATTAAACTGCAGCAATAATGGGAAGCAAAGATGTACAAGTTATCCGACAAGTGGAGTGTTTGAAAGGGAGGAGGGAGGGGTGTGTCCGGAGTACTTCCGGTGGATCCACGAGGATGTTGGGGCGTGGAAAGAGAGAGGGATAAGCAGGGAGATGGTGGAGAGAGCGAAGAAGAGTGCACATTTTAGGTTAGTAGTGAAGAGAGGAAGGGTGTACGTGGAGAGGTATAAGAAATCGATACAGACACGTGAGGTGTTCACGATGTGGGGCATTGTGCAGCTTCTGAGGAAGTACCCAGGTAAAGTGGCAGACCTTGAGCTCATGTTTGATTGTGATGACTTACCAGTAATCCGTGGGAGCAGCCTGGCTGGGCCTCCACCCCTTTTCCGTTACTGCGGTGACCGCTGGACGGACGACATTGTCTTCCCTGATTGGTCCTTCTGGGGATGGGCTGAGATTAATATAAGGCCTTGGGAACATGTGTTGAAGGAGATGGAAAAGGGCAATAGAAGGATTAAATGGAATGACAGAGAACCATATGCCTATTGGAAGGGAAACCCTTTTGTTGCCGAAACCAGACAAGATCTCCTCAAATGTAATGTTTCAACCACCCAAGACTGGAATGCTCGTTTATATGTGCAGGATTGGATTCAAGAATCTCAACAAGGATTCAATAACTCAAACTTGGCAAGTCAATGCACACATAGATACAAGATATATATTGAAGGATATGCGTGGTCTGTGAGTGAGAAATACATCCTAGCCTGTGATTCCGTAACGCTAATGGTGAAGCCTCGTTTCTATGATTTCTTCATAAGAAGCCTGCAGCCAATGCAGCATTATTGGCCTATAAGGGACAAGGGCAAGTGCAAATCCATCAAACATGCAGTTGATTGGGGTAATAATCATAAGGAAGAGGCACAAAAAATTGGTAAAGCAGCAAGCAAGTTTATTCAAGAAGAGCTAAAGATGGATTACGTGTATGACTACATGTTCCATTTGCTAAATGAATATGCAAAGCTTCTAAAGTTTGAGCCAAGAGTGCCAGAAGGAGCTGAGGAGCTGTGTGTGGAGGCCATGGCATGCACAAGAAGTGGGTTAGAGAGGAAGTTTATGACTGAATCAATGGTTAGGGAGCCTTCAACAAAAGCCCCGTGCTCATTGCCTCCTCCGTTGGAGCCAACGTCGCGGAGGGTGTTTTATGCCAACAAACTAAATTCAATTAGGAGAGTTGAGAGGTGGGAAGATAACTATTGGAAAAACAGCACTCAACAGTTGCATACACGCATTTGA

Predicted protein sequences of Glyma01g42740

Limit To All Plant Sequences

>Glyma01g42740.1   sequence type=predicted peptide   gene model=Glyma01g42740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMQRFITERSKKQLTTDSTLVKKAPVSTYTPLLLLLILLTTAFVSSLWSTLSTTNTKPTIIGKKTSVANVVSAKDSKSEEKSSSRKRFQLEATLNCSNNGKQRCTSYPTSGVFEREEGGVCPEYFRWIHEDVGAWKERGISREMVERAKKSAHFRLVVKRGRVYVERYKKSIQTREVFTMWGIVQLLRKYPGKVADLELMFDCDDLPVIRGSSLAGPPPLFRYCGDRWTDDIVFPDWSFWGWAEINIRPWEHVLKEMEKGNRRIKWNDREPYAYWKGNPFVAETRQDLLKCNVSTTQDWNARLYVQDWIQESQQGFNNSNLASQCTHRYKIYIEGYAWSVSEKYILACDSVTLMVKPRFYDFFIRSLQPMQHYWPIRDKGKCKSIKHAVDWGNNHKEEAQKIGKAASKFIQEELKMDYVYDYMFHLLNEYAKLLKFEPRVPEGAEELCVEAMACTRSGLERKFMTESMVREPSTKAPCSLPPPLEPTSRRVFYANKLNSIRRVERWEDNYWKNSTQQLHTRI*

>Glyma01g42740.2   sequence type=predicted peptide   gene model=Glyma01g42740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMQRFITERSKKQLTTDSTLVKKAPVSTYTPLLLLLILLTTAFVSSLWSTLSTTNTKPTIIGKKTSVANVVSAKDSKSEEKSSSRKRFQLEATLNCSNNGKQRCTSYPTSGVFEREEGGVCPEYFRWIHEDVGAWKERGISREMVERAKKSAHFRLVVKRGRVYVERYKKSIQTREVFTMWGIVQLLRKYPGKVADLELMFDCDDLPVIRGSSLAGPPPLFRYCGDRWTDDIVFPDWSFWGWAEINIRPWEHVLKEMEKGNRRIKWNDREPYAYWKGNPFVAETRQDLLKCNVSTTQDWNARLYVQDWIQESQQGFNNSNLASQCTHRYKIYIEGYAWSVSEKYILACDSVTLMVKPRFYDFFIRSLQPMQHYWPIRDKGKCKSIKHAVDWGNNHKEEAQKIGKAASKFIQEELKMDYVYDYMFHLLNEYAKLLKFEPRVPEGAEELCVEAMACTRSGLERKFMTESMVREPSTKAPCSLPPPLEPTSRRVFYANKLNSIRRVERWEDNYWKNSTQQLHTRI*

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