Glyma01g42730 - SoyBase

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Report for Sequence Feature Glyma01g42730

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53929968
stop:	53933699
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g42730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G30495	AT	Annotation by Michelle Graham. TAIR10: Fcf2 pre-rRNA processing protein \| chr5:11380190-11381391 FORWARD LENGTH=196	SoyBase	E_val: 9.00E-71	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3100	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR21686	Panther	UNCHARACTERIZED	JGI		ISS
PTHR21686:SF3	Panther	UNCHARACTERIZED	JGI		ISS
PF08698	PFAM	Fcf2 pre-rRNA processing	JGI		ISS
UniRef100_G7KBW9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Deoxynucleotidyltransferase terminal-interacting protein n=2 Tax=Medicago truncatula RepID=G7KBW9_MEDTR	SoyBase	E_val: 8.00E-95	ISS
UniRef100_I1JA57	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JA57_SOYBN	SoyBase	E_val: 8.00E-142	ISS

Expression Patterns of Glyma01g42730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g42730 not represented in the dataset	Glyma01g42730 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g42730

Paralog	Evidence	Comments
Glyma11g02710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g42730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g218300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g42730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g42730

Limit To All Plant Sequences

>Glyma01g42730.2   sequence type=transcript   gene model=Glyma01g42730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGGGGAAACAGCACAACACGTCGAACTACCCTCCCTCACTCAAAACCCTCGACGCTCACTCCCTCTCTCACATCGCAAGCCAGCCACCGCCTCCACTGGTGGCACTGTCATAATCCGGCGCGAAGTTGCCCCCTCAACGTGGGAGAGTGTCGCTGAAGAAGTTGTTTCGGGTACGGCTAAGAGATTTCTGGGAATCTCATCCTGAGGAATGCCAGCACACAAACCAGTTGTTGGGTTATCATGGCAACCACAGTTGCCTATTCCATCATCATTCAAAGCCACTGATGGGTCTCATACCAAACCTCAAACTGAGGCATCAAGCAGCACTGTTAGGAAATCCAGTTCAGAACTGGTTGATGGCCTTTTCGTCCCTCCAAACGATCCCAGAAAATTAAACAAGTTACTGAGAAAGCAAGCTAAAGATACTGCTGGGAAAAATTGGTTCAATATGCCGGCCCAAACCATCACCCCTGAGTTGCAGAAAGATTTGAAGTTATTAAAGTTGAGGGCTGCCCTTGATCCAAAGCGGCACTACAAGAAAGGTTGGAACAGTTGTAGATTCTCCGTTGGACTTTTTCTCAGGCAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCAGATGAGCTGCTTTCTGATCAAAACCTTGCAGCCTATAGGAAGCGGAAGGTTCGAGAAATTGAAGAACAAAATCGACCAGCTGGGAATGAAAAGTGGAAGATTAAGGGTAGCAATTCCCGGAAGCGGGCTAAGGAAAGGAGGATTTACTGAATTTCTACTCATTTTAGCTGTGGGCGCAGATTATAATGCTTTTTGCAGTTTAGAATTATTACAGGTTATATGAAAATATCTTAGCTGTAAAACCTATTGATGCTGTGTGTTCTTCTATCGTGTTTGACCAATCTCTTTAAACTCTTCTGCTTGGGTTTTTCATACTTGGACCACATTATAAAATTTAGGGGAAATTGCACTCACCTCTCCAGAGGTCCTTTCAAACGACAATTACATCCCTTCTAGTTTTTAAACAAACACTTACCCCACT

>Glyma01g42730.3   sequence type=transcript   gene model=Glyma01g42730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGGGGAAACAGCACAACACGTCGAACTACCCTCCCTCACTCAAAACCCTCGACGCTCACTCCCTCTCTCACATCGCAAGCCAGCCACCGCCTCCACTGGTGGCACTGTCATAATCCGGCGCGAAGTTGCCCCCTCAACGTGGGAGAGTGTCGCTGAAGAAGTTGTTTCGGGTACGGCTAAGAGATTTCTGGGAATCTCATCCTGAGGAATGCCAGCACACAAACCAGTTGTTGGGTTATCATGGCAACCACAGTTGCCTATTCCATCATCATTCAAAGCCACTGATGGGTCTCATACCAAACCTCAAACTGAGGCATCAAGCAGCACTGTTAGGAAATCCAGTTCAGAACTGGTTGATGGCCTTTTCGTCCCTCCAAACGATCCCAGAAAATTAAACAAGTTACTGAGAAAGCAAGCTAAAGATACTGCTGGGAAAAATTGGTTCAATATGCCGGCCCAAACCATCACCCCTGAGTTGCAGAAAGATTTGAAGTTATTAAAGTTGAGGGCTGCCCTTGATCCAAAGCGGCACTACAAGAAAGGTGATTCCAAATCGAAGACACTTCCCAAATATTTCCAGGCAGGTTGGAACAGTTGTAGATTCTCCGTTGGACTTTTTCTCAGGCAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCAGATGAGCTGCTTTCTGATCAAAACCTTGCAGCCTATAGGAAGCGGAAGGTTCGAGAAATTGAAGAACAAAATCGACCAGCTGGGAATGAAAAGTGGAAGATTAAGGGTAGCAATTCCCGGAAGCGGGCTAAGGAAAGGAGGATTTACTGAATTTCTACTCATTTTAGCTGTGGGCGCAGATTATAATGCTTTTTGCAGTTTAGAATTATTACAGGTTATATGAAAATATCTTAGCTGTAAAACCTATTGATGCTGTGTGTTCTTCTATCGTGTTTGACCAATCTCTTTAAACTCTTCTGCTTGGGTTTTTCATACTTGGACCACATTATAAAATTTAGGGGAAATTGCACTCACCTCTCCAGAGGTCCTTTCAAACGACAATTACATCCCTTCTAGTTTTTAAACAAACACTTACCCCACT

>Glyma01g42730.4   sequence type=transcript   gene model=Glyma01g42730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAGCTGGCTAGCTTATTCTCTCAACTGCATATGTTTCTTGCATTACTGGTTTGTTTAAATCAATTTATTTTTTCTAACACATCTCAGGAATGCCAGCACACAAACCAGTTGTTGGGTTATCATGGCAACCACAGTTGCCTATTCCATCATCATTCAAAGCCACTGATGGGTCTCATACCAAACCTCAAACTGAGGCATCAAGCAGCACTGTTAGGAAATCCAGTTCAGAACTGGTTGATGGCCTTTTCGTCCCTCCAAACGATCCCAGAAAATTAAACAAGTTACTGAGAAAGCAAGCTAAAGATACTGCTGGGAAAAATTGGTTCAATATGCCGGCCCAAACCATCACCCCTGAGTTGCAGAAAGATTTGAAGTTATTAAAGTTGAGGGCTGCCCTTGATCCAAAGCGGCACTACAAGAAAGGTGATTCCAAATCGAAGACACTTCCCAAATATTTCCAGGTTGGAACAGTTGTAGATTCTCCGTTGGACTTTTTCTCAGGCAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCAGATGAGCTGCTTTCTGATCAAAACCTTGCAGCCTATAGGAAGCGGAAGGTTCGAGAAATTGAAGAACAAAATCGACCAGCTGGGAATGAAAAGTGGAAGATTAAGGGTAGCAATTCCCGGAAGCGGGCTAAGGAAAGGAGGATTTACTGAATTTCTACTCATTTTAGCTGTGGGCGCAGATTATAATGCTTTTTGCAGTTTAGAATTATTACAGGTTATATGAAAATATCTTAGCTGTAAAACCTATTGATGCTGTGTGTTCTTCTATCGTGTTTGACCAATCTCTTTAAACTCTTCTGCTTGGGTTTTTCATACTTGGACCACATTATAAAATTTAGGGGAAATTGCACTCACCTCTCCAGAGGTCCTTTCAAACGACAATTACATCCCTTCTAGTTTTTAAACAAACACTTACCCCACT

Coding sequences of Glyma01g42730

Limit To All Plant Sequences

>Glyma01g42730.1   sequence type=CDS   gene model=Glyma01g42730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGCACACAAACCAGTTGTTGGGTTATCATGGCAACCACAGTTGCCTATTCCATCATCATTCAAAGCCACTGATGGGTCTCATACCAAACCTCAAACTGAGGCATCAAGCAGCACTGTTAGGAAATCCAGTTCAGAACTGGTTGATGGCCTTTTCGTCCCTCCAAACGATCCCAGAAAATTAAACAAGTTACTGAGAAAGCAAGCTAAAGATACTGCTGGGAAAAATTGGTTCAATATGCCGGCCCAAACCATCACCCCTGAGTTGCAGAAAGATTTGAAGTTATTAAAGTTGAGGGCTGCCCTTGATCCAAAGCGGCACTACAAGAAAGGTGATTCCAAATCGAAGACACTTCCCAAATATTTCCAGGTTGGAACAGTTGTAGATTCTCCGTTGGACTTTTTCTCAGGCAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCAGATGAGCTGCTTTCTGATCAAAACCTTGCAGCCTATAGGAAGCGGAAGGTTCGAGAAATTGAAGAACAAAATCGACCAGCTGGGAATGAAAAGTGGAAGATTAAGGGTAGCAATTCCCGGAAGCGGGCTAAGGAAAGGAGGATTTACTGA

>Glyma01g42730.2   sequence type=CDS   gene model=Glyma01g42730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGCACACAAACCAGTTGTTGGGTTATCATGGCAACCACAGTTGCCTATTCCATCATCATTCAAAGCCACTGATGGGTCTCATACCAAACCTCAAACTGAGGCATCAAGCAGCACTGTTAGGAAATCCAGTTCAGAACTGGTTGATGGCCTTTTCGTCCCTCCAAACGATCCCAGAAAATTAAACAAGTTACTGAGAAAGCAAGCTAAAGATACTGCTGGGAAAAATTGGTTCAATATGCCGGCCCAAACCATCACCCCTGAGTTGCAGAAAGATTTGAAGTTATTAAAGTTGAGGGCTGCCCTTGATCCAAAGCGGCACTACAAGAAAGGTTGGAACAGTTGTAGATTCTCCGTTGGACTTTTTCTCAGGCAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCAGATGA

>Glyma01g42730.3   sequence type=CDS   gene model=Glyma01g42730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGCACACAAACCAGTTGTTGGGTTATCATGGCAACCACAGTTGCCTATTCCATCATCATTCAAAGCCACTGATGGGTCTCATACCAAACCTCAAACTGAGGCATCAAGCAGCACTGTTAGGAAATCCAGTTCAGAACTGGTTGATGGCCTTTTCGTCCCTCCAAACGATCCCAGAAAATTAAACAAGTTACTGAGAAAGCAAGCTAAAGATACTGCTGGGAAAAATTGGTTCAATATGCCGGCCCAAACCATCACCCCTGAGTTGCAGAAAGATTTGAAGTTATTAAAGTTGAGGGCTGCCCTTGATCCAAAGCGGCACTACAAGAAAGGTGATTCCAAATCGAAGACACTTCCCAAATATTTCCAGGCAGGTTGGAACAGTTGTAGATTCTCCGTTGGACTTTTTCTCAGGCAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCAGATGA

>Glyma01g42730.4   sequence type=CDS   gene model=Glyma01g42730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGCACACAAACCAGTTGTTGGGTTATCATGGCAACCACAGTTGCCTATTCCATCATCATTCAAAGCCACTGATGGGTCTCATACCAAACCTCAAACTGAGGCATCAAGCAGCACTGTTAGGAAATCCAGTTCAGAACTGGTTGATGGCCTTTTCGTCCCTCCAAACGATCCCAGAAAATTAAACAAGTTACTGAGAAAGCAAGCTAAAGATACTGCTGGGAAAAATTGGTTCAATATGCCGGCCCAAACCATCACCCCTGAGTTGCAGAAAGATTTGAAGTTATTAAAGTTGAGGGCTGCCCTTGATCCAAAGCGGCACTACAAGAAAGGTGATTCCAAATCGAAGACACTTCCCAAATATTTCCAGGTTGGAACAGTTGTAGATTCTCCGTTGGACTTTTTCTCAGGCAGATTAACAAAGAAGGAGAGGAAAGCAACGCTTGCAGATGAGCTGCTTTCTGATCAAAACCTTGCAGCCTATAGGAAGCGGAAGGTTCGAGAAATTGAAGAACAAAATCGACCAGCTGGGAATGAAAAGTGGAAGATTAAGGGTAGCAATTCCCGGAAGCGGGCTAAGGAAAGGAGGATTTACTGA

Predicted protein sequences of Glyma01g42730

Limit To All Plant Sequences

>Glyma01g42730.1   sequence type=predicted peptide   gene model=Glyma01g42730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPAHKPVVGLSWQPQLPIPSSFKATDGSHTKPQTEASSSTVRKSSSELVDGLFVPPNDPRKLNKLLRKQAKDTAGKNWFNMPAQTITPELQKDLKLLKLRAALDPKRHYKKGDSKSKTLPKYFQVGTVVDSPLDFFSGRLTKKERKATLADELLSDQNLAAYRKRKVREIEEQNRPAGNEKWKIKGSNSRKRAKERRIY*

>Glyma01g42730.2   sequence type=predicted peptide   gene model=Glyma01g42730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPAHKPVVGLSWQPQLPIPSSFKATDGSHTKPQTEASSSTVRKSSSELVDGLFVPPNDPRKLNKLLRKQAKDTAGKNWFNMPAQTITPELQKDLKLLKLRAALDPKRHYKKGWNSCRFSVGLFLRQINKEGEESNACR*

>Glyma01g42730.3   sequence type=predicted peptide   gene model=Glyma01g42730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPAHKPVVGLSWQPQLPIPSSFKATDGSHTKPQTEASSSTVRKSSSELVDGLFVPPNDPRKLNKLLRKQAKDTAGKNWFNMPAQTITPELQKDLKLLKLRAALDPKRHYKKGDSKSKTLPKYFQAGWNSCRFSVGLFLRQINKEGEESNACR*

>Glyma01g42730.4   sequence type=predicted peptide   gene model=Glyma01g42730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPAHKPVVGLSWQPQLPIPSSFKATDGSHTKPQTEASSSTVRKSSSELVDGLFVPPNDPRKLNKLLRKQAKDTAGKNWFNMPAQTITPELQKDLKLLKLRAALDPKRHYKKGDSKSKTLPKYFQVGTVVDSPLDFFSGRLTKKERKATLADELLSDQNLAAYRKRKVREIEEQNRPAGNEKWKIKGSNSRKRAKERRIY*

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