Glyma01g42661 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma01g42661

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53873707
stop:	53877999
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g42661

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G11650	AT	Annotation by Michelle Graham. TAIR10: osmotin 34 \| chr4:7025127-7026113 REVERSE LENGTH=244	SoyBase	E_val: 2.00E-115	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009816	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction	SoyBase	N/A	ISS
GO:0009817	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction	SoyBase	N/A	ISS
GO:0051707	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to other organism	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
PF00314	PFAM	Thaumatin family	JGI		ISS
UniRef100_B6ZHC0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PR-5 protein n=1 Tax=Glycine max RepID=B6ZHC0_SOYBN	SoyBase	E_val: 2.00E-161	ISS
UniRef100_B6ZHC0	UniRef	Annotation by Michelle Graham. Best UniRef hit: PR-5 protein n=1 Tax=Glycine max RepID=B6ZHC0_SOYBN	SoyBase	E_val: 2.00E-161	ISS

Expression Patterns of Glyma01g42661

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g42661 not represented in the dataset	Glyma01g42661 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g42661

Paralog	Evidence	Comments
Glyma11g02770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g42661 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma01g42661

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g42661

Limit To All Plant Sequences

>Glyma01g42661.1   sequence type=CDS   gene model=Glyma01g42661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGTCACGAAAAGCCTCTCAATCTTCCTCTTCATCGCAATGAGCTGCGTCGCCGCAGCTCAGGCAGCGAACTTCAACATCACAAATAACTGCACCTACACGGTGTGGGCCGCTGCCGTGCCCGGCGGCGGCGCAAGGCTTAACCCTGGCGAATCGTGGAACATCAGCGTGACGAACGGCACAACAAGAGGACGCATCTGGGGTCGAACAAACTGCACCTTCGACAACGCGGGACGCGGGAAGTGCCTCACCGGCGACTGCGAGGGTGTTCTGGAGTGCAACAAAACAGGTACACCCCCGAACACGGTCGTTGATTTCGCGTTGAACCAGTATAACAACCTCGACTTCTACGACATCTCCCTCGTCGACGGTTTCAACGTTCCCCTACAGCTGACCCCGACCTACAACTGCAGTTCCGTTAAATGCGCCGCCGACATCATCGGAGAGTGCCCCACTCAGCTCCAGGTTCCTGGCGGCTGCAACAACCCCTGCACGGTTTTCAATACGACTCAGTACTGTTGTAGCACCGGAGCTGCTGGGTGCGGTCCCACAGATTATTCCAAGTTCTTCAAGGAGAGGTGCCCTGATGCCTACAGTTACCCTATGGACGATGCAACCAGCATGTTCACTTGCATGGGATCCGATTATAGGGTTGTCCAAATGGTTTACTTGGCACTGTGCTCTCTGCTAACGTTGGCCTTATCTTTGGCCACAACACATGCAGCAAACTTCGAGATCGTCAACAATTGCCCCTACACGGTGTGGGCCGCGGCGAGTCCGGGTGGAGGCCGGCGTCTGGACCGTGGCCAAACGTGGAACCTCTGGGTGAACCCGGGCACTGCCATGGCCCGTATATGGGGCCGCACCGGGTGCAACTTTGATGGCAGCGGCCGCGGCCGCTGCCAAACGGGAGACTGCACGGGCGGCCTCAATTGCCAAGGCTGGGGGGTCCCTCCCAACACACTTGCGGAATTCGCGTTGAACCAATTTGGCAACCAGGATTTCTACGACATCTCTTTGGTGGACGGGTTCAACATTCCGATGGACTTCTACCCTCTAAACGGTGGGTGTCACAAAATCAGTTGCAGCGCTGATATCAATGGGCAGTGCCCGGGGCCATTAAGGGCACCTGGGGGATGCAACAACCCCTGCACTGTGTTTAAGACGAATGAGTATTGCTGCACCAATGGGCAAGGAAGCTGTGGGCCCACAAACTACTCAAGGTTCTTCAAGGATAGGTGCCATGATTCTTATAGTTACCCTCAGGATGATCCAACAAGTACTTTTACGTGTCCCGCTGGCTCTAACTACAAGGTCGTCTTCTGTCCATTGGGAGAACCTCATGTTACTCTTCATATGCCTGCTAGTACCGCCCACCAGTAA

Predicted protein sequences of Glyma01g42661

Limit To All Plant Sequences

>Glyma01g42661.1   sequence type=predicted peptide   gene model=Glyma01g42661   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVTKSLSIFLFIAMSCVAAAQAANFNITNNCTYTVWAAAVPGGGARLNPGESWNISVTNGTTRGRIWGRTNCTFDNAGRGKCLTGDCEGVLECNKTGTPPNTVVDFALNQYNNLDFYDISLVDGFNVPLQLTPTYNCSSVKCAADIIGECPTQLQVPGGCNNPCTVFNTTQYCCSTGAAGCGPTDYSKFFKERCPDAYSYPMDDATSMFTCMGSDYRVVQMVYLALCSLLTLALSLATTHAANFEIVNNCPYTVWAAASPGGGRRLDRGQTWNLWVNPGTAMARIWGRTGCNFDGSGRGRCQTGDCTGGLNCQGWGVPPNTLAEFALNQFGNQDFYDISLVDGFNIPMDFYPLNGGCHKISCSADINGQCPGPLRAPGGCNNPCTVFKTNEYCCTNGQGSCGPTNYSRFFKDRCHDSYSYPQDDPTSTFTCPAGSNYKVVFCPLGEPHVTLHMPASTAHQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain