Report for Sequence Feature Glyma01g42620
Feature Type: gene_model
Chromosome: Gm01
Start: 53843322
stop: 53846963
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g42620
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G23060 AT
Annotation by Michelle Graham. TAIR10: IQ-domain 22 | chr4:12087283-12090408 FORWARD LENGTH=484
SoyBase E_val: 3.00E-57 ISS
GO:0009739 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005516 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calmodulin binding
SoyBase N/A ISS
PTHR13140 Panther
MYOSIN
JGI ISS
PTHR13140:SF72 Panther
MYOSIN-IX A, B
JGI ISS
PF00612 PFAM
IQ calmodulin-binding motif
JGI ISS
UniRef100_B9RC42 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9RC42_RICCO
SoyBase E_val: 2.00E-95 ISS
UniRef100_I1JA45 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JA45_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g42620
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma01g42620 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g217200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g42620
Coding sequences of Glyma01g42620
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g42620.1 sequence type=CDS gene model=Glyma01g42620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTAAGGCTTCCAAATGGTTTCGCGGCCTTCTCGGTCTCAAAAGACCAGACTCGCCGTCTCCCAAAGAAAAACGCCGCTGGACCTTCGTCAAGTCCTACAGAGAAAAGGACCCCACCCGCATCGTAGCCGCCACCCCCCGCCGCTGCCCTGCCACCACCGCCGGAGGCAATACTCCTGAAGAATGGGCTGCCGTCAAGATTCAAGCTGCCTTTCGAGGCTCTTTGGCAAGGAAAGCCCTTCGAGCGTTGAAAGGATTGGTGAAGCTACAGGCATTAGTGAGAGGTCACATTGAGAGGAAGCGCACAGCAGAGTGGCTGCAAAGAGTGCAAGCACTCTTACGTGTACAGGCCCAAATCCGTGCTGGCCGGGCCCAAATTTTGCACTCCCCCTCTTCCACTTCCCACCTCCGTGGTCCAGCTACACCAGACAAATTTGAAATCCCCATCAGATCCGAGAGCATGAAATATGATCAGTACTCGTCACCACTACTCAAGAGAAACAGCTCTAAATCCCGTGTACAGATCAATGGCGGCAATCAAGAGAGATGCAGGAGTAGATCATCAGATAGTCGCATTGATGAACAACCATGGACTCAACGAAGATCATGGACCAGAGGCTGTAGTATGGATGAAGAGAGAAGTGTGAGGATTCTAGAAATTGATTCTGTAAAACCACACGTGACATCAAAACGTAGAAACCTCTTCTACTCCCCTAGCCAAGCTATGGTTGTTTCGGATCATTACAGTGGGTGTAATTTAACCACCACAAGTCCATCTTCTTATAATAGCCCTCTAAAAATCAACGAGCTTGAGGAGAGTTCATTTTGCGCTGCTGATAATAGTCCTCAAGCTTTATCTTTATCTTCCTCTTCTAAAGATGGTGCCTCCAAAAGAAGCCCTCTTACTCCTACCAGGAGTGATGGCTCAAGAAGCTTCTTAAGTGGTTATTCTGAACCAAACTATCCAAGTTACATGGCTTACACAGAGTCTTCAAAGGCAAAGTTAAGATCTCTGAGTGCTCCAAAGCAGAGGCCACAGTATGAGAGGTGTAGTTCATCAAACAGGTACTCGCTTCATGGATTGGCCACACAAAGGATAGCCGCATTACACGCAAGCTTCACTAACAAAGCTTACCCTGGTTCTGGTCGTTTGGACAAGCTTGGAATGCATGTCCCGTATAAATACTGA
Predicted protein sequences of Glyma01g42620
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g42620.1 sequence type=predicted peptide gene model=Glyma01g42620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGKASKWFRGLLGLKRPDSPSPKEKRRWTFVKSYREKDPTRIVAATPRRCPATTAGGNTPEEWAAVKIQAAFRGSLARKALRALKGLVKLQALVRGHIERKRTAEWLQRVQALLRVQAQIRAGRAQILHSPSSTSHLRGPATPDKFEIPIRSESMKYDQYSSPLLKRNSSKSRVQINGGNQERCRSRSSDSRIDEQPWTQRRSWTRGCSMDEERSVRILEIDSVKPHVTSKRRNLFYSPSQAMVVSDHYSGCNLTTTSPSSYNSPLKINELEESSFCAADNSPQALSLSSSSKDGASKRSPLTPTRSDGSRSFLSGYSEPNYPSYMAYTESSKAKLRSLSAPKQRPQYERCSSSNRYSLHGLATQRIAALHASFTNKAYPGSGRLDKLGMHVPYKY*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
