Glyma01g42500 - SoyBase

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Report for Sequence Feature Glyma01g42500

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53760884
stop:	53761948
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g42500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12610	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr1:4290205-4290834 REVERSE LENGTH=209	SoyBase	E_val: 5.00E-58	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0010371	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gibberellin biosynthetic process	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0048510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of timing of transition from vegetative to reproductive phase	SoyBase	N/A	ISS
GO:0050826	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to freezing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_B3TPR9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CBF3 protein n=1 Tax=Glycine max RepID=B3TPR9_SOYBN	SoyBase	E_val: 6.00E-166	ISS
UniRef100_B3TPR9	UniRef	Annotation by Michelle Graham. Best UniRef hit: CBF3 protein n=1 Tax=Glycine max RepID=B3TPR9_SOYBN	SoyBase	E_val: 6.00E-166	ISS

Expression Patterns of Glyma01g42500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g42500 not represented in the dataset	Glyma01g42500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g42500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g216000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g42500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g42500

Limit To All Plant Sequences

>Glyma01g42500.2   sequence type=CDS   gene model=Glyma01g42500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACATTTTCAAATCCCCACTGGACCATGATTTGAACTGTGGTGGAATATTCCACGACTCAGCAGAAGCATCTTATTCGTCTGAAACAAGGAGCACCCCCTCAGACGAAGAAGTGATTCTAGCGTCAGCGCGGCCAAAGAAGCGAGCGGGAAGAAGAGTCTTCAAGGAGACAAGGCACCCCGTCTACCGAGGAGTGCGTCGCAGGAACAAGAACAAGTGGGTCTGCGAGATGCGAGTCCCCAACAACAACTCACGGATTTGGCTCGGGACATACCCAACGCCCGAAATGGCCGCACGTGCGCACGACGTTGCGGCGCTCGCGCTCAGGGGAAAGTCCGCGTGCCTCAACTTCGCGGACTCCAGGTGGCGGCTGACGGTGCCGGCGACCACCAACGCGGAGGAGATACGGCGAGCGGCGGGGGAGGCTGCTGAGGCATTTGCAGTTGCAGATGGGGACGACGTTAATATTGACCAACAGCAGAGTGTGATGGCCACGAATGATGATGAAGTTCAAGAGCCTCTCCAGCAGGAGGAGGTTCAAGACTTGCATGATTTGCTTTTGAGTATTGCGAATGAGCCTTTGATGTCTCCTCCACCCTGTGCAAGAGATGGTAGGGACTGGAATGACGTGGACATATTTGATGATGATGAAATCTCACTGTGGAACTTCTCAATTTGA

Predicted protein sequences of Glyma01g42500

Limit To All Plant Sequences

>Glyma01g42500.2   sequence type=predicted peptide   gene model=Glyma01g42500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNIFKSPLDHDLNCGGIFHDSAEASYSSETRSTPSDEEVILASARPKKRAGRRVFKETRHPVYRGVRRRNKNKWVCEMRVPNNNSRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSRWRLTVPATTNAEEIRRAAGEAAEAFAVADGDDVNIDQQQSVMATNDDEVQEPLQQEEVQDLHDLLLSIANEPLMSPPPCARDGRDWNDVDIFDDDEISLWNFSI*

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