SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G11790 | AT | Annotation by Michelle Graham. TAIR10: Pleckstrin homology (PH) domain superfamily protein | chr4:7090456-7093208 FORWARD LENGTH=443 | SoyBase | E_val: 6.00E-65 | ISS |
| GO:0046907 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular transport | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2724 | KOG | Nuclear pore complex component NPAP60L/NUP50 | JGI | ISS | |
| PTHR13118 | Panther | NUCLEOPORIN 50 | JGI | ISS | |
| PF00638 | PFAM | RanBP1 domain | JGI | ISS | |
| UniRef100_G7KER0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RanBP1 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KER0_MEDTR | SoyBase | E_val: 4.00E-180 | ISS |
| UniRef100_I1JA30 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=4 Tax=Glycine max RepID=I1JA30_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g42490 not represented in the dataset |
Glyma01g42490 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g02910 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g215800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g42490.2 sequence type=transcript gene model=Glyma01g42490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAGTTGGATTTTTGTATTTATTTTATTAGTTTCTGAAAGTGCCCTTTTCAGAAAAAGGAGGCTTTCCATCGGATTCCAGTGTCGATTTTCTGCTTCTGCATCTGCATAACCCGTTAATAATTGCTGCAAAACCCTAATTCCCCAAATCGTTGATGAAAGGTTCGAAGCGTTTGGCCGCGTCGGAACCCAACCAGATCGATACCAACGAAACGGGGTTCCGGAATAAAAGAATAATGGAAGGATCCCTCTTTGATGTCCATAGGGCCGAACCATCCCAACAACCAATTGTGGCAGCACCACCATTGGATATGAAACGGGCGGAGTCATCACAGCAGCATTTGGGTTCAAACACAACTAAAGAATCATCCTGATGAGCTTTGGGAAGATGGTGTCAGAGATTACTTAGATCATGCTTCAAGCATTATGGAAAAGTTTAGTGATGTTGTCAACTGGCTCAAAGCAAATGCCACTAAGGCAGAAAATTCGGCTGCTGATGCTAGTGCTGCTTTTTCTGGGAAAAAGCTCTTGCCTGAAGTAATAATCAATGAAAATAAATCTTCTGGAGAAAAAACTGGGTCTACTCCTGTTAGTACTGCTACAAATTTTACTAGTTCTTGGAGCCCTGGATTATTTTCAAACAGTCAAGGCATTTTTGGAATTGGAAATCAAAGTTCGGCTATCTCTAATCAGAGTTTGTCTCCCTCTAATCAAAGTTTGGCTCCCTTTAACAACAATGCTTCAGATGATGTAGATGGTGAAAATGAGTTGGAGCAGCCTAGCAGCCCATCAGTTAAGAAGTCAGAAGAGAAAGGTGTAGTAGTTGTACATGAAGTAAAGTGCAAGCTTTATGTGAAGTCAAGTGATCCAGGAGATAAAGATGCATGGAAAGATAAAGGAATGGGCCAACTGTCTATTAAATGCAAAGAGGGTGTCAGCAAGGCTACCAAAGAGTCCAAACCTACAATTGTTGTTCGAAATGAGGTAGGAAAAGTTCTTCTCAACGCCCTGTTGTATCCAGGAATCAAAACAAATCTGCAGAAGAACTCTCTTGTTGCAATATTCCATACTTCGGGTAATGCTGACGGAAGTGGTGGAGATAACGATAGTGTTGTTGCACGTACATTCTTGATCCGGATGAAAACAGAAGATGATCGAAATAAACTGGCTTCAACCATCAAAGAATATGCTCCAATGTCTTGAGAGTACAAGAGTCATGATTATTGTGCCACCTTGAGCCATTTAAAGTAATCGAATACGGGATCCACCTTCAATTTTTCCTTTCACCATTTTATTTTTTTATGATGTCATTTGTTAGATTCTGTGTTTCCAAACCTTGTGTTTGGAGGCTGTTGCTTATGTACCATATGAGAAGGTTGCATTTGGTCGGATAAAATGCCTTAGATTAATGCAATTGTAGTTTAAAGTTAAAAGTGATGCATTCATCACCTTGGACCTGCCGTACTATTTTTTAAAGCCAGCCAAACGGCAGAGAAACCGCATGTTTACAGAATTTGAAGACAAGGTGGAGGACTAGAACATGGTTGTTTCATATTTAGATAAAGTTGACATTTTCTTATATAAAATTTATAATTAAAATTAATTTAATTATACATCTTAATTACGTTGAGTAGAATACTTTCCCCCGTTTTCTCAACCCCTGTTAGCATTGAAG >Glyma01g42490.3 sequence type=transcript gene model=Glyma01g42490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAGTTGGATTTTTGTATTTATTTTATTAGTTTCTGAAAGTGCCCTTTTCAGAAAAAGGAGGCTTTCCATCGGATTCCAGTGTCGATTTTCTGCTTCTGCATCTGCATAACCCGTTAATAATTGCTGCAAAACCCTAATTCCCCAAATCGTTGATGAAAGGTTCGAAGCGTTTGGCCGCGTCGGAACCCAACCAGATCGATACCAACGAAACGGGGGGCCGAACCATCCCAACAACCAATTGTGGCAGCACCACCATTGGATATGAAACGGGCGGAGTCATCACAGCAGCATGTGAGAGCTTTAAATACCCAGTTTGCAAGTTGGGTTCAAACACAACTAAAGAATCATCCTGATGAGCTTTGGGAAGATGGTGTCAGAGATTACTTAGATCATGCTTCAAGCATTATGGAAAAGTTTAGTGATGTTGTCAACTGGCTCAAAGCAAATGCCACTAAGGCAGAAAATTCGGCTGCTGATGCTAGTGCTGCTTTTTCTGGGAAAAAGCTCTTGCCTGAAGTAATAATCAATGAAAATAAATCTTCTGGAGAAAAAACTGGGTCTACTCCTGTTAGTACTGCTACAAATTTTACTAGTTCTTGGAGCCCTGGATTATTTTCAAACAGTCAAGGCATTTTTGGAATTGGAAATCAAAGTTCGGCTATCTCTAATCAGAGTTTGTCTCCCTCTAATCAAAGTTTGGCTCCCTTTAACAACAATGCTTCAGATGATGTAGATGGTGAAAATGAGTTGGAGCAGCCTAGCAGCCCATCAGTTAAGAAGTCAGAAGAGAAAGGTGTAGTAGTTGTACATGAAGTAAAGTGCAAGCTTTATGTGAAGTCAAGTGATCCAGGAGATAAAGATGCATGGAAAGATAAAGGAATGGGCCAACTGTCTATTAAATGCAAAGAGGGTGTCAGCAAGGCTACCAAAGAGTCCAAACCTACAATTGTTGTTCGAAATGAGGTAGGAAAAGTTCTTCTCAACGCCCTGTTGTATCCAGGAATCAAAACAAATCTGCAGAAGAACTCTCTTGTTGCAATATTCCATACTTCGGGTAATGCTGACGGAAGTGGTGGAGATAACGATAGTGTTGTTGCACGTACATTCTTGATCCGGATGAAAACAGAAGATGATCGAAATAAACTGGCTTCAACCATCAAAGAATATGCTCCAATGTCTTGAGAGTACAAGAGTCATGATTATTGTGCCACCTTGAGCCATTTAAAGTAATCGAATACGGGATCCACCTTCAATTTTTCCTTTCACCATTTTATTTTTTTATGATGTCATTTGTTAGATTCTGTGTTTCCAAACCTTGTGTTTGGAGGCTGTTGCTTATGTACCATATGAGAAGGTTGCATTTGGTCGGATAAAATGCCTTAGATTAATGCAATTGTAGTTTAAAGTTAAAAGTGATGCATTCATCACCTTGGACCTGCCGTACTATTTTTTAAAGCCAGCCAAACGGCAGAGAAACCGCATGTTTACAGAATTTGAAGACAAGGTGGAGGACTAGAACATGGTTGTTTCATATTTAGATAAAGTTGACATTTTCTTATATAAAATTTATAATTAAAATTAATTTAATTATACATCTTAATTACGTTGAGTAGAATACTTTCCCCCGTTTTCTCAACCCCTGTTAGCATTGAAG
>Glyma01g42490.1 sequence type=CDS gene model=Glyma01g42490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGGTTCGAAGCGTTTGGCCGCGTCGGAACCCAACCAGATCGATACCAACGAAACGGGGTTCCGGAATAAAAGAATAATGGAAGGATCCCTCTTTGATGTCCATAGGGCCGAACCATCCCAACAACCAATTGTGGCAGCACCACCATTGGATATGAAACGGGCGGAGTCATCACAGCAGCATGTGAGAGCTTTAAATACCCAGTTTGCAAGTTGGGTTCAAACACAACTAAAGAATCATCCTGATGAGCTTTGGGAAGATGGTGTCAGAGATTACTTAGATCATGCTTCAAGCATTATGGAAAAGTTTAGTGATGTTGTCAACTGGCTCAAAGCAAATGCCACTAAGGCAGAAAATTCGGCTGCTGATGCTAGTGCTGCTTTTTCTGGGAAAAAGCTCTTGCCTGAAGTAATAATCAATGAAAATAAATCTTCTGGAGAAAAAACTGGGTCTACTCCTGTTAGTACTGCTACAAATTTTACTAGTTCTTGGAGCCCTGGATTATTTTCAAACAGTCAAGGCATTTTTGGAATTGGAAATCAAAGTTCGGCTATCTCTAATCAGAGTTTGTCTCCCTCTAATCAAAGTTTGGCTCCCTTTAACAACAATGCTTCAGATGATGTAGATGGTGAAAATGAGTTGGAGCAGCCTAGCAGCCCATCAGTTAAGAAGTCAGAAGAGAAAGGTGTAGTAGTTGTACATGAAGTAAAGTGCAAGCTTTATGTGAAGTCAAGTGATCCAGGAGATAAAGATGCATGGAAAGATAAAGGAATGGGCCAACTGTCTATTAAATGCAAAGAGGGTGTCAGCAAGGCTACCAAAGAGTCCAAACCTACAATTGTTGTTCGAAATGAGGTAGGAAAAGTTCTTCTCAACGCCCTGTTGTATCCAGGAATCAAAACAAATCTGCAGAAGAACTCTCTTGTTGCAATATTCCATACTTCGGGTAATGCTGACGGAAGTGGTGGAGATAACGATAGTGTTGTTGCACGTACATTCTTGATCCGGATGAAAACAGAAGATGATCGAAATAAACTGGCTTCAACCATCAAAGAATATGCTCCAATGTCTTGA >Glyma01g42490.2 sequence type=CDS gene model=Glyma01g42490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAAGTTTAGTGATGTTGTCAACTGGCTCAAAGCAAATGCCACTAAGGCAGAAAATTCGGCTGCTGATGCTAGTGCTGCTTTTTCTGGGAAAAAGCTCTTGCCTGAAGTAATAATCAATGAAAATAAATCTTCTGGAGAAAAAACTGGGTCTACTCCTGTTAGTACTGCTACAAATTTTACTAGTTCTTGGAGCCCTGGATTATTTTCAAACAGTCAAGGCATTTTTGGAATTGGAAATCAAAGTTCGGCTATCTCTAATCAGAGTTTGTCTCCCTCTAATCAAAGTTTGGCTCCCTTTAACAACAATGCTTCAGATGATGTAGATGGTGAAAATGAGTTGGAGCAGCCTAGCAGCCCATCAGTTAAGAAGTCAGAAGAGAAAGGTGTAGTAGTTGTACATGAAGTAAAGTGCAAGCTTTATGTGAAGTCAAGTGATCCAGGAGATAAAGATGCATGGAAAGATAAAGGAATGGGCCAACTGTCTATTAAATGCAAAGAGGGTGTCAGCAAGGCTACCAAAGAGTCCAAACCTACAATTGTTGTTCGAAATGAGGTAGGAAAAGTTCTTCTCAACGCCCTGTTGTATCCAGGAATCAAAACAAATCTGCAGAAGAACTCTCTTGTTGCAATATTCCATACTTCGGGTAATGCTGACGGAAGTGGTGGAGATAACGATAGTGTTGTTGCACGTACATTCTTGATCCGGATGAAAACAGAAGATGATCGAAATAAACTGGCTTCAACCATCAAAGAATATGCTCCAATGTCTTGA >Glyma01g42490.3 sequence type=CDS gene model=Glyma01g42490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACGGGCGGAGTCATCACAGCAGCATGTGAGAGCTTTAAATACCCAGTTTGCAAGTTGGGTTCAAACACAACTAAAGAATCATCCTGATGAGCTTTGGGAAGATGGTGTCAGAGATTACTTAGATCATGCTTCAAGCATTATGGAAAAGTTTAGTGATGTTGTCAACTGGCTCAAAGCAAATGCCACTAAGGCAGAAAATTCGGCTGCTGATGCTAGTGCTGCTTTTTCTGGGAAAAAGCTCTTGCCTGAAGTAATAATCAATGAAAATAAATCTTCTGGAGAAAAAACTGGGTCTACTCCTGTTAGTACTGCTACAAATTTTACTAGTTCTTGGAGCCCTGGATTATTTTCAAACAGTCAAGGCATTTTTGGAATTGGAAATCAAAGTTCGGCTATCTCTAATCAGAGTTTGTCTCCCTCTAATCAAAGTTTGGCTCCCTTTAACAACAATGCTTCAGATGATGTAGATGGTGAAAATGAGTTGGAGCAGCCTAGCAGCCCATCAGTTAAGAAGTCAGAAGAGAAAGGTGTAGTAGTTGTACATGAAGTAAAGTGCAAGCTTTATGTGAAGTCAAGTGATCCAGGAGATAAAGATGCATGGAAAGATAAAGGAATGGGCCAACTGTCTATTAAATGCAAAGAGGGTGTCAGCAAGGCTACCAAAGAGTCCAAACCTACAATTGTTGTTCGAAATGAGGTAGGAAAAGTTCTTCTCAACGCCCTGTTGTATCCAGGAATCAAAACAAATCTGCAGAAGAACTCTCTTGTTGCAATATTCCATACTTCGGGTAATGCTGACGGAAGTGGTGGAGATAACGATAGTGTTGTTGCACGTACATTCTTGATCCGGATGAAAACAGAAGATGATCGAAATAAACTGGCTTCAACCATCAAAGAATATGCTCCAATGTCTTGA
>Glyma01g42490.1 sequence type=predicted peptide gene model=Glyma01g42490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKGSKRLAASEPNQIDTNETGFRNKRIMEGSLFDVHRAEPSQQPIVAAPPLDMKRAESSQQHVRALNTQFASWVQTQLKNHPDELWEDGVRDYLDHASSIMEKFSDVVNWLKANATKAENSAADASAAFSGKKLLPEVIINENKSSGEKTGSTPVSTATNFTSSWSPGLFSNSQGIFGIGNQSSAISNQSLSPSNQSLAPFNNNASDDVDGENELEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSSDPGDKDAWKDKGMGQLSIKCKEGVSKATKESKPTIVVRNEVGKVLLNALLYPGIKTNLQKNSLVAIFHTSGNADGSGGDNDSVVARTFLIRMKTEDDRNKLASTIKEYAPMS* >Glyma01g42490.2 sequence type=predicted peptide gene model=Glyma01g42490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKFSDVVNWLKANATKAENSAADASAAFSGKKLLPEVIINENKSSGEKTGSTPVSTATNFTSSWSPGLFSNSQGIFGIGNQSSAISNQSLSPSNQSLAPFNNNASDDVDGENELEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSSDPGDKDAWKDKGMGQLSIKCKEGVSKATKESKPTIVVRNEVGKVLLNALLYPGIKTNLQKNSLVAIFHTSGNADGSGGDNDSVVARTFLIRMKTEDDRNKLASTIKEYAPMS* >Glyma01g42490.3 sequence type=predicted peptide gene model=Glyma01g42490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKRAESSQQHVRALNTQFASWVQTQLKNHPDELWEDGVRDYLDHASSIMEKFSDVVNWLKANATKAENSAADASAAFSGKKLLPEVIINENKSSGEKTGSTPVSTATNFTSSWSPGLFSNSQGIFGIGNQSSAISNQSLSPSNQSLAPFNNNASDDVDGENELEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSSDPGDKDAWKDKGMGQLSIKCKEGVSKATKESKPTIVVRNEVGKVLLNALLYPGIKTNLQKNSLVAIFHTSGNADGSGGDNDSVVARTFLIRMKTEDDRNKLASTIKEYAPMS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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