SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G63000 | AT | Annotation by Michelle Graham. TAIR10: nucleotide-rhamnose synthase/epimerase-reductase | chr1:23342510-23343859 FORWARD LENGTH=301 | SoyBase | E_val: 8.00E-167 | ISS |
| GO:0010253 | GO-bp | Annotation by Michelle Graham. GO Biological Process: UDP-rhamnose biosynthetic process | SoyBase | N/A | ISS |
| GO:0019305 | GO-bp | Annotation by Michelle Graham. GO Biological Process: dTDP-rhamnose biosynthetic process | SoyBase | N/A | ISS |
| GO:0045226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: extracellular polysaccharide biosynthetic process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0008830 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dTDP-4-dehydrorhamnose 3,5-epimerase activity | SoyBase | N/A | ISS |
| GO:0008831 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dTDP-4-dehydrorhamnose reductase activity | SoyBase | N/A | ISS |
| GO:0010489 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity | SoyBase | N/A | ISS |
| GO:0010490 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-4-keto-rhamnose-4-keto-reductase activity | SoyBase | N/A | ISS |
| PTHR10366 | Panther | NAD DEPENDENT EPIMERASE/DEHYDRATASE | JGI | ISS | |
| PTHR10366:SF55 | Panther | UDP-GLUCOSE 4-EPIMERASE | JGI | ISS | |
| PF04321 | PFAM | RmlD substrate binding domain | JGI | ISS | |
| UniRef100_C6TJM2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TJM2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_D2WK23 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: UDP-L-rhamnose synthase n=1 Tax=Gossypium hirsutum RepID=D2WK23_GOSHI | SoyBase | E_val: 1.00E-170 | ISS |
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Glyma01g42441 not represented in the dataset |
Glyma01g42441 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g215400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g42441.1 sequence type=CDS gene model=Glyma01g42441 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGCAGAAGCAAATGGCGGCGAGAAGCAATTGAAATTTCTGATCTACGGTCGCAGCGGTTGGATTGGTGGTCTACTGGGTAAGCTCTGCGAAGAGCGCGGGATCCAATATGAGTACGGCACCGGCAGATTGGAGAACCGCTCGTCGTTGGAGGCGGACATAGCGGCTGTGAAGCCCAGCCACGTGTTCAACGCCGCGGGTGTCACGGGTAGACCCAATGTGGACTGGTGCGAATCTCACAAAGTTGAAACCATCCGAACCAACGTCGTCGGCACTCTCACCCTCGCCGACGTCTGCCATCATAAAGGCCTCATCCTCATCAACTACGCCACCGGCTGCATCTTCGAGTACGATTCTTCCCACACTCTCGGATCCGGCATCGCCTTCAAGGAACACGACACTCCCAATTTCACCGGATCCTTCTACTCCAAGACCAAAGCCATGGTGGAGGATCTGGTTGGGAACTACGAGAACGTGTGCACGTGCATCACTCGATACGACAAGGTTGTCGACATTCCCAACTCCATGACCATATTGGACGAGCTTCTCCCAATCTCGCTGGAGATGGCCAAGCGGAACCTCACTGGGATCTGGAATTTCACCAACCCTGGAGTCGTAAGTCACAACGAGATTTTACAGATGTACAAGGAATACGTGGATCCGAACTTTACATGGAAGAACTTCACTCTGGAGGAGCAGGCTAAGGTGATTGTTGCCCCTAGAAGCAACAACGAGCTTGACGCCTCTAAGTTGAAGAATGAGTTTCCTCAACTTTTGTCCATCAAAGACTCCCTCGTTAAGTATGTATTCCAGCCAAATCAGAAAAAGGCATAA
>Glyma01g42441.1 sequence type=predicted peptide gene model=Glyma01g42441 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGAEANGGEKQLKFLIYGRSGWIGGLLGKLCEERGIQYEYGTGRLENRSSLEADIAAVKPSHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCHHKGLILINYATGCIFEYDSSHTLGSGIAFKEHDTPNFTGSFYSKTKAMVEDLVGNYENVCTCITRYDKVVDIPNSMTILDELLPISLEMAKRNLTGIWNFTNPGVVSHNEILQMYKEYVDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKNEFPQLLSIKDSLVKYVFQPNQKKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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