Glyma01g42420 - SoyBase

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Report for Sequence Feature Glyma01g42420

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53671720
stop:	53677285
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g42420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42010	AT	Annotation by Michelle Graham. TAIR10: phospholipase D beta 1 \| chr2:17533018-17537990 REVERSE LENGTH=1083	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009816	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004630	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phospholipase D activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005546	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol-4,5-bisphosphate binding	SoyBase	N/A	ISS
KOG1329	KOG	Phospholipase D1	JGI		ISS
PTHR18896	Panther	PHOSPHOLIPASE D	JGI		ISS
PTHR18896:SF15	Panther	PHOSPHOLIPASE D BETA	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
PF00614	PFAM	Phospholipase D Active site motif	JGI		ISS
PF12357	PFAM	Phospholipase D C terminal	JGI		ISS
UniRef100_I1JA23	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase D n=1 Tax=Glycine max RepID=I1JA23_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1JA23	UniRef	Annotation by Michelle Graham. Best UniRef hit: Phospholipase D n=1 Tax=Glycine max RepID=I1JA23_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma01g42420

Locus	Gene Symbol	Protein Name
	PLD-gamma	Phospholipase D gamma

Expression Patterns of Glyma01g42420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g42420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g215100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g42420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g42420

Limit To All Plant Sequences

>Glyma01g42420.1   sequence type=CDS   gene model=Glyma01g42420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCATTTGGTTTATGGTGAAACTCCGTCTTTTGGAGCCTCACACCATGGACAGGCTCAGCAAATTGTTCCATTTCAAACCACTTCGAGCTCCTTAAGGATCCTGCTCTTACATGGCAACTTAGAAATATGGGTCAACGAGGCCAGAAACCTTCCCAACATGGACATGTTCCACAAGAAAACGGGAGAAATGGTTTCCATGTTGTCCCGAAAACTTGGCGGCAAAATCGAAGGTCACATGTCCAAAGCTGGAACCAGTGATCCCTATGTTACGGTATCTGTGGCCGGTGCTGTGATTGCCAGAACTTTTGTCATCAGAAACAGTGAGAACCCTGTTTGGACACAGCATTTCAATGTCCCCGTTGCACATCTTGCTTCTGAAGTTCACTTTGTTGTCAAGGACAGTGATATTGTGGGTTCTCAGATTATTGGAGCAGTGGGAATTCCAGTGGAACATTTATGTAGTGGAACAAGAGTTGAGGGCTTTTTCCCCATCCTTGGTGCTAATGGGAAACCATGTAAGGGTGGATCAGTGTTGAGTTTATCCATTCAGTACACCCCTGTTGAAAAGGTGCCTCTTTATAGCCATGGAGTAGGTGCTGGTCCTGATTATGAAGGGGTCCCTGGTACCTACTTTCCCCTTAGAAAAGGTGGAAAAGTTACACTTTATCAGGATGCTCATGTTGAAGAAGGTTGCCTTCCCAGTTTGAAGGTGGATGGATATGTGAATTACAAGCATGGAAGTTGTTGGCATGACATATTTGATGCAATAAGTGAGGCTCGTCGATTGGTTTACATTGTGGGGTGGTCTGTGTACTACAATGTTAGTCTCATTCGGGATAGTGCTAATGGAAAATCCTACACTTTAGGTGATCTTCTCAAAGCCAAATCACAGGAAGGTGTGAGAGTGCTGCTCCTTGTTTGGGATGATCCCACGTCTAAAAGCATGCTTGGATTTAAAACGGTTGGACTCATGAACACTCATGATGAGGACACTCGCCAGTTTTTCAAGAACTCTTCAGTACGAGTGCTTCTTTGCCCACGAGCTGGTGGAAAAGGACATAGCTGGGTCAAAACGCAGGAAGCTGGAACAATCTATACCCATCATCAGAAGACAGTCATTGTGGATGCTGATGCAGGTCAGAATAAAAGAAAAATCAAAGCTTTCATCGGAGGTCTTGATTTATGTGTGGGCCGATATGATACCCCAAACCATTCCATCTTTAGGACTTTGCAGACAACACACAAAGATGACTATCATAATCCTAACTTTGAGGGGCCAGTTACTGGTTGTCCAAGACAACCATGGCATGATTTGCATTCCCAAGTTGATGGTCCAGCAGCATATGACATTCTCACCAATTTTGAGGAGCGTTGGTTAAGGGCATTAAAAATGCATAGATTTCAAAAGATGAAAAGTTCACATGATGATTCATTACTGAAAATTGATAGAATCCCTGACATTGTTGGCATTGATGAAGTTCCTTGCCAGAATGAAAATAACCGGGAGACTTGGCATGCCCAGGTCTTCCGTTCAATTGATTCTAATTCTGTGAAAGGATTTCCAAAGGAACCACAAGATGCTATAAGAAGGAACTTGGTTTGTGGAAAGAATGTACTGATAGACATGAGCATACATTCAGCGTATGTCAAGGCAATTCGAGCAGCCCAAAAGTTTATCTATATTGAGAACCAATACTTTCTTGGCTCGTCATATAATTGGGATTCTTACAAAGACCTTGGTGCAAACAACTTAATTCCAATGGAAATTGCATTAAAAATAGCCAATAAAATCAAACAACATGAGAGATTTTCTGTGTATATTGTCATTCCTATGTGGCCTGAAGGTGTACCTACAAGTACAGCTACTCAGAGGATTCTCTTTTGGCAGTTCAAAACAATGCAAATGATGTATGAAACAATTTACAAGGCCCTACAGGAGGCTGGGCTTGACAATAAGTATGAACCACAGGACTACTTGAATTTCTTTTGCCTTGGCAATCGTGAGATACCTGACAATGAAAATGTTTTAAATGATGTAAAAACTACTGGAGAAAACAAGCCTCAGGCACTCACTAAAAAGAACCGGAGATTCATGATTTATGTTCATTCAAAAGGAATGATAGTGGATGATGAATATGTGTTACTGGGGTCTGCAAACATAAACCAGCGATCCATGGAAGGCACCAGAGATACAGAGATAGCAATGGGGGCATATCAGCCTAATCATACTTGGGCAAAGAAGCAATCTAAACCTCACGGACAGGTGCATGGTTATAGAATGTCACTATGGAGCGAACATATAGGAGCCGTGGAAGAATGTTTTGAGGAACCAGAGAGCCTTGAATGTGTAAGACGGATAAGGTCATTGAGTGAGTTTAACTGGAGACAATATGCAGCAGAAGAGGTAACTGAAATGAAAAGTCATCTATTAAAATATCCGCTTGAAGTTGATTCAAAGGGCAAAGTGAAGCCTCTTTTTGGCTGTGAGGCATTCCCAGACGTTGGTGGGAACATAAGTGGCACTTTCACACTACTCAAAGAAAATCTCACCATCTGA

Predicted protein sequences of Glyma01g42420

Limit To All Plant Sequences

>Glyma01g42420.1   sequence type=predicted peptide   gene model=Glyma01g42420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHLVYGETPSFGASHHGQAQQIVPFQTTSSSLRILLLHGNLEIWVNEARNLPNMDMFHKKTGEMVSMLSRKLGGKIEGHMSKAGTSDPYVTVSVAGAVIARTFVIRNSENPVWTQHFNVPVAHLASEVHFVVKDSDIVGSQIIGAVGIPVEHLCSGTRVEGFFPILGANGKPCKGGSVLSLSIQYTPVEKVPLYSHGVGAGPDYEGVPGTYFPLRKGGKVTLYQDAHVEEGCLPSLKVDGYVNYKHGSCWHDIFDAISEARRLVYIVGWSVYYNVSLIRDSANGKSYTLGDLLKAKSQEGVRVLLLVWDDPTSKSMLGFKTVGLMNTHDEDTRQFFKNSSVRVLLCPRAGGKGHSWVKTQEAGTIYTHHQKTVIVDADAGQNKRKIKAFIGGLDLCVGRYDTPNHSIFRTLQTTHKDDYHNPNFEGPVTGCPRQPWHDLHSQVDGPAAYDILTNFEERWLRALKMHRFQKMKSSHDDSLLKIDRIPDIVGIDEVPCQNENNRETWHAQVFRSIDSNSVKGFPKEPQDAIRRNLVCGKNVLIDMSIHSAYVKAIRAAQKFIYIENQYFLGSSYNWDSYKDLGANNLIPMEIALKIANKIKQHERFSVYIVIPMWPEGVPTSTATQRILFWQFKTMQMMYETIYKALQEAGLDNKYEPQDYLNFFCLGNREIPDNENVLNDVKTTGENKPQALTKKNRRFMIYVHSKGMIVDDEYVLLGSANINQRSMEGTRDTEIAMGAYQPNHTWAKKQSKPHGQVHGYRMSLWSEHIGAVEECFEEPESLECVRRIRSLSEFNWRQYAAEEVTEMKSHLLKYPLEVDSKGKVKPLFGCEAFPDVGGNISGTFTLLKENLTI*

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