SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G11860 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF544) | chr4:7134237-7138361 REVERSE LENGTH=682 | SoyBase | E_val: 3.00E-110 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR18063 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04424 | PFAM | Protein of unknown function (DUF544) | JGI | ISS | |
| UniRef100_G7KES5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein FAM63A n=1 Tax=Medicago truncatula RepID=G7KES5_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JA20 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JA20_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma01g42400 not represented in the dataset |
Glyma01g42400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g02970 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g214700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g42400.2 sequence type=transcript gene model=Glyma01g42400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAGAAGTTAACGTTTCTTTGGGTAAAAAAGAAGAAAGAAAAGATTAGGGGGAATAAAAGAAAATGGTTCGTATTGTGCGGGGTTTGACATTAAGGTGGAACAACGAATGAAAGAAGCTTTAGTAGTCCTACTCCTCCATTTGTTTTTCATAAAGAGGCCAATTGTAATCTGAGTTTTTGAAGCAAATCCATCGAAATGGCAGCATCGTCTTCTTCTCCTTCAAAGGAGCCACAACTCAAGGACGAGGAGGATCGGGAACAAGAGGAACAACACCAACAGCCACAGCCAGTCAAAGAGTGCGTCCACAAAACCAAAACGATCCAGTTTCTCGGACGTACCACTCCGATCGTTCTTCAAAACGACAACGGACCCTGCCCGCTCCTCGCTATCTGTAATGTTCTGCTGCTGAGAAACAACTTAAATTTGAGTCCAGATATTGCTGAAGTCTCACAGGAGAAATTGCTTTCATTGGTTGCTGAACGATTAATTGATTCAAATAGTAATGTGAATAACAAAGATGCAGGCTATGTTGAAAATCAACAACAGAACATTGCTGATGCAATTGACTTACTCCCTAGGCTTGCTACTGGAATTGATGTAAATATAAAATTTAGGAGAATAGGTGATTTTGAATTCACTCGAGAGTGTGCCATATTTGATCTGCTGGACATTCCCTTGTATCATGGCTGGATTGTTGATCCTCAGGATTATGACACTGCGAATGCAATTGGATCAAAATCCTATAATTCCCTTATGGGAGAGCTTGTCTCTCTTGAAACACTAAACATGGAGGTCCATCATAAAAATAATCCAGAAGAAGATTGTGTTGATTTTGTGGCTGCAACAACTGCTACTCTTGGAGTTCCCTCTCCCAGTCTTTCAAAAGCCAGGTCGTTTGATGATTCTTCTCATTCTATTTCTGATAATATACTAAGAAAAGGTGATCTAGAAGAAGAGGCAGAGTTGTTGAGAGTCTTGAAAATGTCCGAGGATGAAAGTGATCCTGTTGTAGGTCACATGCATGGAGGAGAAATTTCTGTCAGTATGGATAGAAAAATGTGTAATGACGAGGTTATAAATATGGATTGTGGAGATAAATTAGGAAATAGCTCTGGTGCTGGTAACAGTAACTTTCATGAGCATGGCCCAGAGCCTTCCTTATCTGATGATTGTGCTGCTTCTGGCAAAGACCACAGCGAACAGATATCTTCTACTTCTACACTGGGAGAGGCAGCTAATTCATCCTTAAAGACTGATACCATAAGTGACCTTCATCAATCAACTTATACGGGACCTGAAGAATCTTTTGACCTGAATGATGTGATTGAGAAGAACAGCCTTGATGCATTGGTTCAGAATGAGAGTGAAGTTATCCCTTCTCCTGAAAAACACTCTGTCTCTTTGTTTGAGTGCCGTGCAGATTTTTCTGGAGGTGATGGAAAAGTCCATGATCAATCCACTCCTACAACTATAGATCATGAAGTTGTAGGTGAATCTCATGGACCTGATGCCACAGGATTATCATTCTCATCCCCTGGCCATACAAATTCAGATTCATCTAGTGTCAGATATCATCAAACTGATGTTTCTGGAGCATTGACTTCAAGTGTTCAAGGGAGTGAGCCCATATATGAAGGAGAGGAATGTGTATTGGATACAAGAACTGGAAATTTTGAGGATCGTGAACCTGTTTATGAAGGTGAGGTGGTACTTGCAGAACAGGCTGACAGAAGCACCTTAGTTGCTCCTGATCTAAGAGCTAAGGATGAACTTACTCCAGAACAAGGTGAATTGATCAAGAGTTTCTTGAGGAATAATGCCAGCCAGTTGACATTTTATGGTCTTTTCTGTTTACAAGATGGGCTTAAAGAGCGTGAGCTGTGTGTTTTTTTCCGTAACAATCATTTCAGCACCATGTTCAAGTTTGAGGGTGAGCTCTATCTTCTAGCCACGGACCAAGGTTACATAAATCAGCCTGATCTGGTCTGGGAAAAACTGAATGAGGTCAATGGTGATACATTGTTTATGACCGGTAATTTCAAGGAATTCAAGGTAGAAAACCATGAAAGTAGTACTTGGGATGAGAACAATGCTCTGACCAGCACTGCCGACTATCTTGCCAGCATAGATAGTGCAACACATGCAGGCTTAGATATCAAGTAAGTTTCCATGAAAACTTGTTACCTTTTACTATTTCAAAATTATAGTTTTATCGATTCAAGATGGTTTGGTAAAAATTCATCATATCTGTAATTATGACAGTTCTGATCTCCAATTAGCAATAGCCTTGCAACAACAGGAGTTTGAGCAGCAGCCACCACGCCAGAATAATTCACAGCCGCAATCATCCATTAGTGGTAGCTCTAGACTGGTCACAGGTCCCCAGGTGGCAAGAAACACTGGAAGACATTCATCTTCATCAACATCTGCATCTCCCAGGTCTGATGCAAAATCCAAAGATAAATGTATAGTGATGTGATGTGAATTTCACTAGCAGAGTTTGTTTAGAAGCTTGCACTTTAAAATGCGTCGCCTAGATAATTGTACCTTATTACAGCTATCTTATTCCTCATGCTTTGCATGTGATATTAGGTTAAGTTTCTTTTGTAAATATTGGAAGTATATAGTGTACAACAGTGCTAGGTCCTTTTTAAACTGTGACCACAACACTCAACCCTTCCCGCCGTCACTTAATATTGTCTGGACTAACAATCCCAACCATTGTATGCTGATTGATTTTGCAGCACTTTAAGTAGGGAGTTAAAGCTCAGTCGGCTCAGGTTTACCATTGCCATTTCACCTGTGTGTCCTCTCGATTAGATACTGTTGCCAACTTGCTAGATAGATGTTAACTGACTGGGAATGTGCATGGTATTAAATTTTTAAGGGAAAAAGGTTGATTTTTAAATTTTGGAAGTAATACATTCTTTTTTCTTTTCATACCACGTAGTATTTGCTTGTAATGACAATTTTTAGAATGAGCTAGTAATTTAACTTTTAATTTGTGATTGGCAAGTTTTATCCCA
>Glyma01g42400.1 sequence type=CDS gene model=Glyma01g42400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCATCGTCTTCTTCTCCTTCAAAGGAGCCACAACTCAAGGACGAGGAGGATCGGGAACAAGAGGAACAACACCAACAGCCACAGCCAGTCAAAGAGTGCGTCCACAAAACCAAAACGATCCAGTTTCTCGGACGTACCACTCCGATCGTTCTTCAAAACGACAACGGACCCTGCCCGCTCCTCGCTATCTGTAATGTTCTGCTGCTGAGAAACAACTTAAATTTGAGTCCAGATATTGCTGAAGTCTCACAGGAGAAATTGCTTTCATTGGTTGCTGAACGATTAATTGATTCAAATAGTAATGTGAATAACAAAGATGCAGGCTATGTTGAAAATCAACAACAGAACATTGCTGATGCAATTGACTTACTCCCTAGGCTTGCTACTGGAATTGATGTAAATATAAAATTTAGGAGAATAGGTGATTTTGAATTCACTCGAGAGTGTGCCATATTTGATCTGCTGGACATTCCCTTGTATCATGGCTGGATTGTTGATCCTCAGGATTATGACACTGCGAATGCAATTGGATCAAAATCCTATAATTCCCTTATGGGAGAGCTTGTCTCTCTTGAAACACTAAACATGGAGGTCCATCATAAAAATAATCCAGAAGAAGATTGTGTTGATTTTGTGGCTGCAACAACTGCTACTCTTGGAGTTCCCTCTCCCAGTCTTTCAAAAGCCAGGTCGTTTGATGATTCTTCTCATTCTATTTCTGATAATATACTAAGAAAAGGTGATCTAGAAGAAGAGGCAGAGTTGTTGAGAGTCTTGAAAATGTCCGAGGATGAAAGTGATCCTGTTGTAGGTCACATGCATGGAGGAGAAATTTCTGTCAGTATGGATAGAAAAATGTGTAATGACGAGGTTATAAATATGGATTGTGGAGATAAATTAGGAAATAGCTCTGGTGCTGGTAACAGTAACTTTCATGAGCATGGCCCAGAGCCTTCCTTATCTGATGATTGTGCTGCTTCTGGCAAAGACCACAGCGAACAGATATCTTCTACTTCTACACTGGGAGAGGCAGCTAATTCATCCTTAAAGACTGATACCATAAGTGACCTTCATCAATCAACTTATACGGGACCTGAAGAATCTTTTGACCTGAATGATGTGATTGAGAAGAACAGCCTTGATGCATTGGTTCAGAATGAGAGTGAAGTTATCCCTTCTCCTGAAAAACACTCTGTCTCTTTGTTTGAGTGCCGTGCAGATTTTTCTGGAGGTGATGGAAAAGTCCATGATCAATCCACTCCTACAACTATAGATCATGAAGTTGTAGGTGAATCTCATGGACCTGATGCCACAGGATTATCATTCTCATCCCCTGGCCATACAAATTCAGATTCATCTAGTGTCAGATATCATCAAACTGATGTTTCTGGAGCATTGACTTCAAGTGTTCAAGGGAGTGAGCCCATATATGAAGGAGAGGAATGTGTATTGGATACAAGAACTGGAAATTTTGAGGATCGTGAACCTGTTTATGAAGGTGAGGTGGTACTTGCAGAACAGGCTGACAGAAGCACCTTAGTTGCTCCTGATCTAAGAGCTAAGGATGAACTTACTCCAGAACAAGGTGAATTGATCAAGAGTTTCTTGAGGAATAATGCCAGCCAGTTGACATTTTATGGTCTTTTCTGTTTACAAGATGGGCTTAAAGAGCGTGAGCTGTGTGTTTTTTTCCGTAACAATCATTTCAGCACCATGTTCAAGTTTGAGGGTGAGCTCTATCTTCTAGCCACGGACCAAGGTTACATAAATCAGCCTGATCTGGTCTGGGAAAAACTGAATGAGGTCAATGGTGATACATTGTTTATGACCGGTAATTTCAAGGAATTCAAGGTAGAAAACCATGAAAGTAGTACTTGGGATGAGAACAATGCTCTGACCAGCACTGCCGACTATCTTGCCAGCATAGATAGTGCAACACATGCAGGCTTAGATATCAATTCTGATCTCCAATTAGCAATAGCCTTGCAACAACAGGAGTTTGAGCAGCAGCCACCACGCCAGAATAATTCACAGCCGCAATCATCCATTAGTGGTAGCTCTAGACTGGTCACAGGTCCCCAGGTGGCAAGAAACACTGGAAGACATTCATCTTCATCAACATCTGCATCTCCCAGGTCTGATGCAAAATCCAAAGATAAATGTATAGTGATGTGA >Glyma01g42400.2 sequence type=CDS gene model=Glyma01g42400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGCATCGTCTTCTTCTCCTTCAAAGGAGCCACAACTCAAGGACGAGGAGGATCGGGAACAAGAGGAACAACACCAACAGCCACAGCCAGTCAAAGAGTGCGTCCACAAAACCAAAACGATCCAGTTTCTCGGACGTACCACTCCGATCGTTCTTCAAAACGACAACGGACCCTGCCCGCTCCTCGCTATCTGTAATGTTCTGCTGCTGAGAAACAACTTAAATTTGAGTCCAGATATTGCTGAAGTCTCACAGGAGAAATTGCTTTCATTGGTTGCTGAACGATTAATTGATTCAAATAGTAATGTGAATAACAAAGATGCAGGCTATGTTGAAAATCAACAACAGAACATTGCTGATGCAATTGACTTACTCCCTAGGCTTGCTACTGGAATTGATGTAAATATAAAATTTAGGAGAATAGGTGATTTTGAATTCACTCGAGAGTGTGCCATATTTGATCTGCTGGACATTCCCTTGTATCATGGCTGGATTGTTGATCCTCAGGATTATGACACTGCGAATGCAATTGGATCAAAATCCTATAATTCCCTTATGGGAGAGCTTGTCTCTCTTGAAACACTAAACATGGAGGTCCATCATAAAAATAATCCAGAAGAAGATTGTGTTGATTTTGTGGCTGCAACAACTGCTACTCTTGGAGTTCCCTCTCCCAGTCTTTCAAAAGCCAGGTCGTTTGATGATTCTTCTCATTCTATTTCTGATAATATACTAAGAAAAGGTGATCTAGAAGAAGAGGCAGAGTTGTTGAGAGTCTTGAAAATGTCCGAGGATGAAAGTGATCCTGTTGTAGGTCACATGCATGGAGGAGAAATTTCTGTCAGTATGGATAGAAAAATGTGTAATGACGAGGTTATAAATATGGATTGTGGAGATAAATTAGGAAATAGCTCTGGTGCTGGTAACAGTAACTTTCATGAGCATGGCCCAGAGCCTTCCTTATCTGATGATTGTGCTGCTTCTGGCAAAGACCACAGCGAACAGATATCTTCTACTTCTACACTGGGAGAGGCAGCTAATTCATCCTTAAAGACTGATACCATAAGTGACCTTCATCAATCAACTTATACGGGACCTGAAGAATCTTTTGACCTGAATGATGTGATTGAGAAGAACAGCCTTGATGCATTGGTTCAGAATGAGAGTGAAGTTATCCCTTCTCCTGAAAAACACTCTGTCTCTTTGTTTGAGTGCCGTGCAGATTTTTCTGGAGGTGATGGAAAAGTCCATGATCAATCCACTCCTACAACTATAGATCATGAAGTTGTAGGTGAATCTCATGGACCTGATGCCACAGGATTATCATTCTCATCCCCTGGCCATACAAATTCAGATTCATCTAGTGTCAGATATCATCAAACTGATGTTTCTGGAGCATTGACTTCAAGTGTTCAAGGGAGTGAGCCCATATATGAAGGAGAGGAATGTGTATTGGATACAAGAACTGGAAATTTTGAGGATCGTGAACCTGTTTATGAAGGTGAGGTGGTACTTGCAGAACAGGCTGACAGAAGCACCTTAGTTGCTCCTGATCTAAGAGCTAAGGATGAACTTACTCCAGAACAAGGTGAATTGATCAAGAGTTTCTTGAGGAATAATGCCAGCCAGTTGACATTTTATGGTCTTTTCTGTTTACAAGATGGGCTTAAAGAGCGTGAGCTGTGTGTTTTTTTCCGTAACAATCATTTCAGCACCATGTTCAAGTTTGAGGGTGAGCTCTATCTTCTAGCCACGGACCAAGGTTACATAAATCAGCCTGATCTGGTCTGGGAAAAACTGAATGAGGTCAATGGTGATACATTGTTTATGACCGGTAATTTCAAGGAATTCAAGGTAGAAAACCATGAAAGTAGTACTTGGGATGAGAACAATGCTCTGACCAGCACTGCCGACTATCTTGCCAGCATAGATAGTGCAACACATGCAGGCTTAGATATCAAGTAA
>Glyma01g42400.1 sequence type=predicted peptide gene model=Glyma01g42400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAASSSSPSKEPQLKDEEDREQEEQHQQPQPVKECVHKTKTIQFLGRTTPIVLQNDNGPCPLLAICNVLLLRNNLNLSPDIAEVSQEKLLSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRRIGDFEFTRECAIFDLLDIPLYHGWIVDPQDYDTANAIGSKSYNSLMGELVSLETLNMEVHHKNNPEEDCVDFVAATTATLGVPSPSLSKARSFDDSSHSISDNILRKGDLEEEAELLRVLKMSEDESDPVVGHMHGGEISVSMDRKMCNDEVINMDCGDKLGNSSGAGNSNFHEHGPEPSLSDDCAASGKDHSEQISSTSTLGEAANSSLKTDTISDLHQSTYTGPEESFDLNDVIEKNSLDALVQNESEVIPSPEKHSVSLFECRADFSGGDGKVHDQSTPTTIDHEVVGESHGPDATGLSFSSPGHTNSDSSSVRYHQTDVSGALTSSVQGSEPIYEGEECVLDTRTGNFEDREPVYEGEVVLAEQADRSTLVAPDLRAKDELTPEQGELIKSFLRNNASQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKFEGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTGNFKEFKVENHESSTWDENNALTSTADYLASIDSATHAGLDINSDLQLAIALQQQEFEQQPPRQNNSQPQSSISGSSRLVTGPQVARNTGRHSSSSTSASPRSDAKSKDKCIVM* >Glyma01g42400.2 sequence type=predicted peptide gene model=Glyma01g42400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAASSSSPSKEPQLKDEEDREQEEQHQQPQPVKECVHKTKTIQFLGRTTPIVLQNDNGPCPLLAICNVLLLRNNLNLSPDIAEVSQEKLLSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRRIGDFEFTRECAIFDLLDIPLYHGWIVDPQDYDTANAIGSKSYNSLMGELVSLETLNMEVHHKNNPEEDCVDFVAATTATLGVPSPSLSKARSFDDSSHSISDNILRKGDLEEEAELLRVLKMSEDESDPVVGHMHGGEISVSMDRKMCNDEVINMDCGDKLGNSSGAGNSNFHEHGPEPSLSDDCAASGKDHSEQISSTSTLGEAANSSLKTDTISDLHQSTYTGPEESFDLNDVIEKNSLDALVQNESEVIPSPEKHSVSLFECRADFSGGDGKVHDQSTPTTIDHEVVGESHGPDATGLSFSSPGHTNSDSSSVRYHQTDVSGALTSSVQGSEPIYEGEECVLDTRTGNFEDREPVYEGEVVLAEQADRSTLVAPDLRAKDELTPEQGELIKSFLRNNASQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKFEGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTGNFKEFKVENHESSTWDENNALTSTADYLASIDSATHAGLDIK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
