Report for Sequence Feature Glyma01g42390
Feature Type: gene_model
Chromosome: Gm01
Start: 53645665
stop: 53647995
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g42390
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G22920 AT
Annotation by Michelle Graham. TAIR10: non-yellowing 1 | chr4:12016776-12017969 REVERSE LENGTH=268
SoyBase E_val: 4.00E-119 ISS
GO:0015996 GO-bp
Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
UniRef100_Q5EMP6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Senescence-inducible chloroplast stay-green protein 2 n=1 Tax=Glycine max RepID=Q5EMP6_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q5EMP6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Senescence-inducible chloroplast stay-green protein 2 n=1 Tax=Glycine max RepID=Q5EMP6_SOYBN
SoyBase E_val: 0 ISS
Proteins Associated with Glyma01g42390
Locus Gene Symbol Protein Name
D1 D1 D1
D1 SGR2 Stay-green gene 2
Expression Patterns of Glyma01g42390
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma01g42390
Paralog Evidence Comments
Glyma11g02980 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g42390 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g214600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g42390
Coding sequences of Glyma01g42390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g42390.1 sequence type=CDS gene model=Glyma01g42390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTACTCTAACAACTGTTCCTGTGCTCCCTTCTAAGCTTAACAAGCCTTCGCTTTCTCCGCGTCACAATTCTCTTTTTCCCTACTACGGAAGACGCGTCGGGAAGAAGAACAAAGCAATGGTTCCTGTTGCTAGGTTGTTCGGGCCAGCCATATTTGAAGCCTCAAAGCTTAAGGTTTTATTCTTAGGAGTGGACGAAAATAAACACCCAGGAAATCTCCCAAGGACTTATACTCTAACCCATAGTGATATAACCGCTAAGCTCACCTTGGCAATCTCTCAAACCATAAATAATTCTCAGTTACAGGGGTGGTACAACAGATTGCAAAGGGACGAAGTGGTGGCACAGTGGAAGAAGGTGAAGGGAAAGATGTCTCTGCACGTACACTGCCACATCAGTGGTGGTCATTTTCTCTTAGATATATTAGCAAGGTTACGATACTTCATCTTCTGCAAGGAGCTACCAGTGGTGTTGAAGGCGGTGGTTCACGGCGACGAAAACCTATTCAACAACTACCCAGAATTGCAAGATGCCTTGGTTTGGGTTTACTTTCACTCAAACATTCCAGAATTCAACAAGGTGGAATGTTGGGGCCCACTGAAGGAAGCGTCAGCACCAATAGGTGGGGCCAAGGAAGAGAGTGAGCAAGAAACTCTTCTAAGTAAGGAGGGCTTGGCAATTCCACAGCCATGCCAAGAGGAATGCGAATGTTGCTTTCCACCGCTGACGTTAAGCCCAATTCAGTGGTCTCAACAAGTTCCCAGCCACCATTACGAACCTTGTGATGGGATTGAGACCCAACAAAGTCTATAA
Predicted protein sequences of Glyma01g42390
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g42390.1 sequence type=predicted peptide gene model=Glyma01g42390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGTLTTVPVLPSKLNKPSLSPRHNSLFPYYGRRVGKKNKAMVPVARLFGPAIFEASKLKVLFLGVDENKHPGNLPRTYTLTHSDITAKLTLAISQTINNSQLQGWYNRLQRDEVVAQWKKVKGKMSLHVHCHISGGHFLLDILARLRYFIFCKELPVVLKAVVHGDENLFNNYPELQDALVWVYFHSNIPEFNKVECWGPLKEASAPIGGAKEESEQETLLSKEGLAIPQPCQEECECCFPPLTLSPIQWSQQVPSHHYEPCDGIETQQSL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
