SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G22910 | AT | Annotation by Michelle Graham. TAIR10: FIZZY-related 2 | chr4:12012743-12015663 FORWARD LENGTH=483 | SoyBase | E_val: 0 | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0007276 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gamete generation | SoyBase | N/A | ISS |
| GO:0010091 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome branching | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0032875 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0043248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome assembly | SoyBase | N/A | ISS |
| GO:0051302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell division | SoyBase | N/A | ISS |
| GO:0051510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005834 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex | SoyBase | N/A | ISS |
| GO:0004871 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: signal transducer activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0305 | KOG | Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits | JGI | ISS | |
| PTHR19918 | Panther | CELL DIVISION CYCLE 20 (CDC20) (FIZZY)-RELATED | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_I1JA18 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JA18_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9XED5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cell cycle switch protein n=1 Tax=Medicago sativa subsp. x varia RepID=Q9XED5_MEDSV | SoyBase | E_val: 0 | ISS |
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Glyma01g42380 not represented in the dataset |
Glyma01g42380 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g02990 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g214500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g42380.1 sequence type=CDS gene model=Glyma01g42380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGAATCATTCACTCCAGCACCACCACCTCCTCCAATGTCCCTTTCTCGGCACGATCACGTCCAACGAATGATAAACTCGAAGCGCTACAAGTCACCTTCGAAAACAATATACTCCGACAGGTTCATTCCGAGCAGATCCGGTTCCAATTTCGATCTCTTCAATCTACCTTCGCCGTCGTCGTCAGAGGACAGTTGCAGTTGCAGCCCCTACAGCACCGCGCTGCGGAGGGCCTTGTTCGGACCAGACACTCCCGATAAATTTGAAAGCCCTAATATATTCCGTTACAAAACGGAGACTCGAAAGTCTATGTATTCTCTCTCACCCACCCCTTTTACTTCCCAGGATGATCTTCTCCCTGGTTATGACAACAATCATAAACCTCCCAAGCGTCCTCGCAAGATTCCTCCCTCCTCTTTTAAGGTTTTGGACGCCCCTGCGCTGCAAGACGATTTTTATCTGAATCTCGTGGATTGGTCATCCAACAATATCTTGGCTGTGGCTCTGGAGAACTCTGTTTATTTGTGGAATGCTTCTAGCAGCAAGGTAACTAAATTATGCGATTTGGGGATTGACGATTCAGTTTGTTCAGTTGGCTGGGCTCCACTTGGTACCTACCTGTCTGTTGGATCAAACAGTGGTAAAGTCCAGATTTGGGATGTATCTCAAGGCAAGTCAATAAGAACTATGGAGGGTCATCGTTTACGTGTTGGGGCCTTGGCTTGGAGTTCCTCTCTTTTGTCTTCTGGTGGCCGGGATAAAAGCATTTATCAACGAGATATACGTGCACAGGAGGATTTTGTCAGTAAACTGTCTGGGCACAAGTCAGAGGTTTGTGGACTGAAGTGGTCTTATGACAACCGTGAGCTAGCATCTGGAGGAAATGACAACAGGTTGCTTGTTTGGAATCAAAAGTCAACCCAGCCCGTTCTGAAGTTCTGTGAGCATACAGCAGCTGTTAAAGCTATTGCATGGTCTCCTCATGTAAATGGACTTCTTGCATCTGGAGGAGGAACTGTGGACCGAAACATTCGCTTTTGGAATACAACCACAAACTCACAGTTAAACTGTATCGACACTGGTAGTCAGGTTTGTAACCTTGTTTGGTCTAAAAATGTGAATGAACTCGTAAGCACACATGGTTACTCCCAGAACCAGATAATAGTTTGGAAATATCCCACCATGTCAAAGCTAGCAACGCTTACAGGCCATACTTACAGAGTTCTTTATCTTGCCATATCTCCTGACGGGCAGACTATCGTCACTGGAGCTGGAGATGAAACTCTTAGGTTCTGGAATGTATTCCCTTCGCGGAAATCACAGAATACTGAGAGTGAAATTGGAGCTTCATCTTTTGGCAGAACTATCATCAGATGA
>Glyma01g42380.1 sequence type=predicted peptide gene model=Glyma01g42380 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDESFTPAPPPPPMSLSRHDHVQRMINSKRYKSPSKTIYSDRFIPSRSGSNFDLFNLPSPSSSEDSCSCSPYSTALRRALFGPDTPDKFESPNIFRYKTETRKSMYSLSPTPFTSQDDLLPGYDNNHKPPKRPRKIPPSSFKVLDAPALQDDFYLNLVDWSSNNILAVALENSVYLWNASSSKVTKLCDLGIDDSVCSVGWAPLGTYLSVGSNSGKVQIWDVSQGKSIRTMEGHRLRVGALAWSSSLLSSGGRDKSIYQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLLVWNQKSTQPVLKFCEHTAAVKAIAWSPHVNGLLASGGGTVDRNIRFWNTTTNSQLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWKYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSRKSQNTESEIGASSFGRTIIR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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