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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma01g42360

Feature Type:gene_model
Chromosome:Gm01
Start:53625973
stop:53630351
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g42360
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G22890AT Annotation by Michelle Graham. TAIR10: PGR5-LIKE A | chr4:12007157-12009175 FORWARD LENGTH=322 SoyBaseE_val: 8.00E-159ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009657GO-bp Annotation by Michelle Graham. GO Biological Process: plastid organization SoyBaseN/AISS
GO:0009773GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0010304GO-bp Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043085GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_G7KET9UniRef Annotation by Michelle Graham. Most informative UniRef hit: PGR5-like protein 1A n=1 Tax=Medicago truncatula RepID=G7KET9_MEDTR SoyBaseE_val: 3.00E-175ISS
UniRef100_I1JA15UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JA15_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma01g42360
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g42360 not represented in the dataset
Glyma01g42360 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g42360 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g214300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g42360
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma01g42360
>Glyma01g42360.4   sequence type=transcript   gene model=Glyma01g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACGATGTGAAGGCAAGAAAAGAAAAGGAAGGAAAGGCCTCCACACATTCATTGTTGCCTTATCTTTATCTCTCCTCCAACCAAACAAATTAAAAACGACCCTCAATTAATGCACAAGATAAAACCATTACTAAACAGCGCCACCACCATTATACTCTCTGTTGCTAATCATGGCTAGCAAATTGGCCTTCACACTGACATACCCGCTTCCACTTACACCAATCTCTTCCTTGTCCTCCTCTTCTGCTTCTCGACTCCACCTTCTTCAATTCAATGGCCGCCACATATGCCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAGACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATTGTAGCATAGACAAAAAAGAGAAGAAATCAGTTGGTGAAATGGAGCAAGAATTTCTACAGGCACTGCAAGCATTCTATTATGAGGGGAAGGCTATTATGTCAAATGAGGAATTTGATAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAAGTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAAAACCAATCTTGAGCGACAAAGAGTTTGATGAGTTGAAACTCAGGCTAAAGATGGAAGGGAGTGAAATTGTGGCTGAAGGTCCACGGTGTAGTCTTCGTAGTAGAAAGGTTTACAGTGACCTGTCTGTTGACTATTTAAAGATGTTCTTGCTGAATGTCCCAGCAACTGTGGTTGCACTAGGATTGTTCTTCTTCCTTGATGATGTGACTGGATTTGAGATCTCATATCTGATAAAGATTCCAGAGCCTTTTAGTTTCATCTTAACTTGGTTTGCCGCTATTCCCTTTATTTTGTGGCTGGCTCAATCGATCACTAGGGCAATTGTACAAGATTTTCTGATTTTAAAGGGCCCTTGTCCCAACTGTGGTACTGAAAATACCTCTTTCTTTGGGACTATACTGTCGGTTTCAAGTGGCGATTCCACCAACAAAGTCAAATGTGAAAACTGTGAAACTAAAATGGTGTATGATTCAAAAACAAGATTGATTACATTACCAGAAGGAAGTAATGCTTAAATGGAGGCACGCTTGATACTATTGTTTCCTGTAATGAGATGAGATCGTCATAGGTAGAAGCTACTGAAATCATTGTTCTCTATGGGCCATGAAATCATTGTTCTCAATGTCGCACACCATATATGCTAGTGAGTTGTAATGGCACACTTTGGGCCTTTTGCAAAAATACTGTGCGGCCCCATTTTTTACTAATGGAGCGGTAAAAAAAAAAAGAAAAGAAAGACGAATGATTAAAACTTGATTACAAATTTGATTCAGCTGTGCTACTTTTCACAATGAGTATAAGCACAATGTATTGGAAGCAAATGTAAGAAAGAAGGGTTAGAATCTCTCTTCATTCAATTTTAGCTTTCCCCAAATTAGGAAGTAGTACAAAATTTACTAAATTATTCTTAATTTTATAAGGGGTGGTCTAACATACCCTAAGTAGAAATGGAATTAAATAAACCAATCTAGATGGCCTAATAAAATTAGAACAAATGTATTATGGATTGAGCCCATT
Coding sequences of Glyma01g42360
>Glyma01g42360.3   sequence type=CDS   gene model=Glyma01g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAGCAAATTGGCCTTCACACTGACATACCCGCTTCCACTTACACCAATCTCTTCCTTGTCCTCCTCTTCTGCTTCTCGACTCCACCTTCTTCAATTCAATGGCCGCCACATATGCCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAGACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATTGTAGCATAGACAAAAAAGAGAAGAAATCAGTTGGTGAAATGGAGCAAGAATTTCTACAGGCACTGCAAGCATTCTATTATGAGGGGAAGGCTATTATGTCAAATGAGGAATTTGATAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAAGTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAAAACCAATCTTGAGCGACAAAGAGTTTGATGAGTTGAAACTCAGGCTAAAGATGGAAGGGAGTGAAATTGTGGCTGAAGGTCCACGGTGTAGTCTTCGTAGTAGAAAGGTTTACAGTGACCTGTCTGTTGACTATTTAAAGATGTTCTTGCTGAATGTCCCAGCAACTGTGGTTGCACTAGGATTGTTCTTCTTCCTTGATGATGTGACTGGATTTGAGATCTCATATCTGATAAAGATTCCAGAGCCTTTTAGTTTCATCTTAACTTGGTTTGCCGCTATTCCCTTTATTTTGTGGCTGGCTCAATCGATCACTAGGGCAATTGTACAAGATTTTCTGATTTTAAAGGGCCCTTGTCCCAACTGTGGTACTGAAAATACCTCTTTCTTTGGGACTATACTGTCGGTTTCAAGTGGCGATTCCACCAACAAAGTCAAATGTGAAAACTGTGAAACTAAAATGGTGTATGATTCAAAAACAAGATTGATTACATTACCAGAAGGAAGTAATGCTTAA

>Glyma01g42360.4   sequence type=CDS   gene model=Glyma01g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAGCAAATTGGCCTTCACACTGACATACCCGCTTCCACTTACACCAATCTCTTCCTTGTCCTCCTCTTCTGCTTCTCGACTCCACCTTCTTCAATTCAATGGCCGCCACATATGCCTTCGCCCTCGGCTATTTCTGTTTTCTCCCATGGCCACAGCCGATCAAGACAAGGTTGAGGAAGATGCTGCCGTTGTTGATAGTAAAATCCTACAATATTGTAGCATAGACAAAAAAGAGAAGAAATCAGTTGGTGAAATGGAGCAAGAATTTCTACAGGCACTGCAAGCATTCTATTATGAGGGGAAGGCTATTATGTCAAATGAGGAATTTGATAATCTTAAGGAAGAACTCATGTGGGAAGGGAGCACCGTTGTGATGCTAAGTTCTGATGAGCAAAAATTTCTGGAAGCGTCTATGGCTTATGTGTCTGGAAAACCAATCTTGAGCGACAAAGAGTTTGATGAGTTGAAACTCAGGCTAAAGATGGAAGGGAGTGAAATTGTGGCTGAAGGTCCACGGTGTAGTCTTCGTAGTAGAAAGGTTTACAGTGACCTGTCTGTTGACTATTTAAAGATGTTCTTGCTGAATGTCCCAGCAACTGTGGTTGCACTAGGATTGTTCTTCTTCCTTGATGATGTGACTGGATTTGAGATCTCATATCTGATAAAGATTCCAGAGCCTTTTAGTTTCATCTTAACTTGGTTTGCCGCTATTCCCTTTATTTTGTGGCTGGCTCAATCGATCACTAGGGCAATTGTACAAGATTTTCTGATTTTAAAGGGCCCTTGTCCCAACTGTGGTACTGAAAATACCTCTTTCTTTGGGACTATACTGTCGGTTTCAAGTGGCGATTCCACCAACAAAGTCAAATGTGAAAACTGTGAAACTAAAATGGTGTATGATTCAAAAACAAGATTGATTACATTACCAGAAGGAAGTAATGCTTAA
Predicted protein sequences of Glyma01g42360
>Glyma01g42360.3   sequence type=predicted peptide   gene model=Glyma01g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKLAFTLTYPLPLTPISSLSSSSASRLHLLQFNGRHICLRPRLFLFSPMATADQDKVEEDAAVVDSKILQYCSIDKKEKKSVGEMEQEFLQALQAFYYEGKAIMSNEEFDNLKEELMWEGSTVVMLSSDEQKFLEASMAYVSGKPILSDKEFDELKLRLKMEGSEIVAEGPRCSLRSRKVYSDLSVDYLKMFLLNVPATVVALGLFFFLDDVTGFEISYLIKIPEPFSFILTWFAAIPFILWLAQSITRAIVQDFLILKGPCPNCGTENTSFFGTILSVSSGDSTNKVKCENCETKMVYDSKTRLITLPEGSNA*

>Glyma01g42360.4   sequence type=predicted peptide   gene model=Glyma01g42360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASKLAFTLTYPLPLTPISSLSSSSASRLHLLQFNGRHICLRPRLFLFSPMATADQDKVEEDAAVVDSKILQYCSIDKKEKKSVGEMEQEFLQALQAFYYEGKAIMSNEEFDNLKEELMWEGSTVVMLSSDEQKFLEASMAYVSGKPILSDKEFDELKLRLKMEGSEIVAEGPRCSLRSRKVYSDLSVDYLKMFLLNVPATVVALGLFFFLDDVTGFEISYLIKIPEPFSFILTWFAAIPFILWLAQSITRAIVQDFLILKGPCPNCGTENTSFFGTILSVSSGDSTNKVKCENCETKMVYDSKTRLITLPEGSNA*






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