Glyma01g42350 - SoyBase

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Report for Sequence Feature Glyma01g42350

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53621948
stop:	53624135
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g42350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G22880	AT	Annotation by Michelle Graham. TAIR10: leucoanthocyanidin dioxygenase \| chr4:12004905-12006059 REVERSE LENGTH=356	SoyBase	E_val: 0	ISS
GO:0007033	GO-bp	Annotation by Michelle Graham. GO Biological Process: vacuole organization	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009718	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0010023	GO-bp	Annotation by Michelle Graham. GO Biological Process: proanthocyanidin biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
GO:0050589	GO-mf	Annotation by Michelle Graham. GO Molecular Function: leucocyanidin oxygenase activity	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_C6TCJ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TCJ0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2TUV8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Anthocyanidin synthase 2 n=1 Tax=Glycine max RepID=Q2TUV8_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma01g42350

Locus	Gene Symbol	Protein Name
	ANS2	Anthocyanidin synthase 2

Expression Patterns of Glyma01g42350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g42350

Paralog	Evidence	Comments
Glyma11g03010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g42350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g214200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g42350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g42350

Limit To All Plant Sequences

>Glyma01g42350.1   sequence type=CDS   gene model=Glyma01g42350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTACGGTGGCTCCAAGAGTTGAAAGCTTGGCGAGCAGCGGGATAAAGTGTATCCCGAAGGAATACGTGAGGCCTCAAGAAGAGCTCAAGAGCATAGGGAACGTGTTTGAGGAGGAAAAGAAGGAAGGGCTACAGGTTCCGACAATTGACTTGAGAGAGATAGATTCGGAGGACGAGGTTGTTCGAGGGAAATGTCGTGAGAAGCTGAAGAAAGCGGCGGAGGAGTGGGGTGTGATGCACTTGGTGAACCATGGGATCCCCGATGAGCTGATAGAGCGGGTGAAGAAAGCAGGGGAAACGTTCTTTGGTCTGGCGGTTGAGGAAAAGGAGAAGTACGCGAATGATTTGGAGTCTGGCAAGATTCAAGGCTATGGAAGCAAGCTGGCCAACAATGCCAGTGGCCAACTCGAGTGGGAAGATTACTTCTTCCACCTTGCTTTCCCTGAGGACAAGCGTGACCTCTCCTTCTGGCCAAAGAAACCCGCTGATTATATTGAGGTCACAAGCGAGTATGCAAAGCGACTGAGGGGGCTTGCGACCAAGATATTGGAGGCACTCTCTATTGGATTGGGGTTGGAAGGACGGAGGTTGGAGAAGGAAGTTGGTGGGATGGAAGAGCTTCTACTTCAATTGAAGATCAACTACTACCCTATTTGTCCCCAGCCAGAACTTGCTCTGGGAGTTGAAGCCCACACTGATGTGAGTTCACTCACTTTCCTCCTTCACAACATGGTGCCAGGTCTGCAGCTATTCTACGAAGGCCAATGGGTCACAGCAAAATGTGTCCCCGATTCCATTCTCATGCACATTGGTGACACCATTGAGATCCTGAGCAACGGCAAGTACAAGAGCATTCTTCATAGGGGGTTGGTGAACAAGGAAAAGGTTAGAATATCGTGGGCAGTGTTCTGTGAACCCCCCAAGGAGAAGATCATCCTGCAGCCACTTCCCGAGCTTGTCACTGAGACAGAGCCAGCACGCTTTCCACCTCGCACTTTTGCTCAGCATATTCACCACAAACTATTCAGAAAGGATCAGGAAGGTCTCCCAAATTGA

Predicted protein sequences of Glyma01g42350

Limit To All Plant Sequences

>Glyma01g42350.1   sequence type=predicted peptide   gene model=Glyma01g42350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTVAPRVESLASSGIKCIPKEYVRPQEELKSIGNVFEEEKKEGLQVPTIDLREIDSEDEVVRGKCREKLKKAAEEWGVMHLVNHGIPDELIERVKKAGETFFGLAVEEKEKYANDLESGKIQGYGSKLANNASGQLEWEDYFFHLAFPEDKRDLSFWPKKPADYIEVTSEYAKRLRGLATKILEALSIGLGLEGRRLEKEVGGMEELLLQLKINYYPICPQPELALGVEAHTDVSSLTFLLHNMVPGLQLFYEGQWVTAKCVPDSILMHIGDTIEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKIILQPLPELVTETEPARFPPRTFAQHIHHKLFRKDQEGLPN*

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