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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G22840 | AT | Annotation by Michelle Graham. TAIR10: Sodium Bile acid symporter family | chr4:11991636-11993676 REVERSE LENGTH=409 | SoyBase | E_val: 2.00E-156 | ISS |
| GO:0006814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sodium ion transport | SoyBase | N/A | ISS |
| GO:0035725 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0008508 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: bile acid:sodium symporter activity | SoyBase | N/A | ISS |
| KOG2718 | KOG | Na+-bile acid cotransporter | JGI | ISS | |
| PTHR10361 | Panther | SODIUM-BILE ACID COTRANSPORTER RELATED | JGI | ISS | |
| PTHR10361:SF0 | Panther | BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN | JGI | ISS | |
| PF01758 | PFAM | Sodium Bile acid symporter family | JGI | ISS | |
| UniRef100_G7KEV9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ileal sodium/bile acid cotransporter n=1 Tax=Medicago truncatula RepID=G7KEV9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JA04 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JA04_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g42260 not represented in the dataset |
Glyma01g42260 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g03100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g213400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g42260.2 sequence type=transcript gene model=Glyma01g42260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGTTTTTTTAATTAAAGAATAATAAGTATGAGTGTTTTGAAGAAGAAAGATAATTGGGTGATTTGATAAATCAGAATCAGGTGGGAGTCCCATCGCAATAGACAATAGTAGCTGTTGCTGTGCAGTTCTTCAGTCACTATGATTTCAAGTGGTCTGAAACTGAAGCACTTCCGCAATGTTGATTCGCTCTTCCATTTTCCCAAATCCAAACCCCCAATTTTACTCCCATGCTGCCCAACCATCTCTTCTCCATGCTCCATTCGTTTCAATTCGCATTTCCCATGTAATCTACTCTCTCTCTCATTTTGCACTTCCACCCATCTTAACTTAATTTCTATGTGTGTTCTGTTTTCATAGACCGGAGCACCAAAGTTCCCCTAAAATGTGCACCACTCCCCTCTTCAGATTCTCTGCCACCTGATCTTTCCGATGCCCCGACCCAGACGGAGCAAAATTCCATGTCAATTCTGGAGATTCTGAAGCAATCAAATTCATACCTGCCTCATGTACTCATTGCTAGTATACTGCTAGCTCTAATCTACCCACCTTCTTTAACGTGGTTCACCAGCAGATACTATGCACCTGCACTAGGTTTTTTGATGTTTGCTGTTGGGGTTAATTCAAATGAAAATGACTTCCTCGAGGCATTTAAGAGGCCAGCAGAAATTGTCACTGGTTATTTTGGCCAGTTTGCTGTGAAGCCTCTTCTTGGATATCTGTTTTGCATGATTGCAGTAACTGTTTTAAGCCTACCAACAACAGTAGGCGCAGGAATTGTATTGGTGGCTTGTGTTAGTGGTGCCCAGCTTTCAAGTTATGCTACTTTCCTGACGGATCCACAAATGGCACCTTTAAGCATAGTTATGACATCACTGTCCACTGCTTCTGCAGTGTTTGTCACACCACTCTTACTACTGTTGCTCATAGGGAAGAAATTGCCTATAGATGTAAGAGGAATGGTGTACAGCATTACACAGATTGTGGTAGTACCTATCGCAGCTGGCCTGCTTCTAAATCGATTCTATCCTCGTATTTGCAATGTTATTCGACCATTTTTGCCTCCACTATCAGTACTGGTGGCATCTATCTGTGCTGGAGCACCACTCGCCTTTAATGTTGAGACTATGAAATCCCCTCTGGGAGTTGCTATCTTGTTGCTTGTTGTTGCTTTTCATTTGTCATCTTTTATAGCTGGTTATATCCTCAGTGGATTTGTCTTCCGTGATTCTCTTGATGTGAAGGCACTGCAACGAACAATTTCCTTTGAGACAGGAATGCAAAGTAGCCTGCTTGCCTTGGCTCTTGCTAATAAGTTCTTTGAAGATCCAAAAGTGGCTATTCCTCCAGCAATTTCTACTTCAATCATGTCTTTGATGGGATTTGTTCTTGTCCTGATTTGGACCAGAAGAGGAAAGAGAGACATAAAACACAGCTCTTGAAAGGTATGGATATAGGGATACATATTACTACAAATTGGTCCATCTTGTATTCTAGTGAGCATCGGTTCTGCTTACTAGGAGGGACCGATGGCAGTCGTAGTGATAATGTATTAATATCACATTATCTATTCATGACTATTAGCCTGTCCCTTTTAGATTTTAGAAACCTCAAATAAGCAAGTTTGTTGTGATCAATAAAATCCAGATCATCAGTAACTTCTGTGTTTAATTTTTATTTTTTTTAATGCTCAAACCAAAGTGGTATCTAACGTACGCCAGATCCTCAAGTGTTAGTTGTCGTTAGATTTAATAAATGTTTTATTGAAGGCTGAGGTTTGTTACCTGCAACTTAGTGGATTCGGTGATAGGCAGCTTTCAAAGGAAGA
>Glyma01g42260.1 sequence type=CDS gene model=Glyma01g42260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATTTCAAGTGGTCTGAAACTGAAGCACTTCCGCAATGTTGATTCGCTCTTCCATTTTCCCAAATCCAAACCCCCAATTTTACTCCCATGCTGCCCAACCATCTCTTCTCCATGCTCCATTCGTTTCAATTCGCATTTCCCATACCGGAGCACCAAAGTTCCCCTAAAATGTGCACCACTCCCCTCTTCAGATTCTCTGCCACCTGATCTTTCCGATGCCCCGACCCAGACGGAGCAAAATTCCATGTCAATTCTGGAGATTCTGAAGCAATCAAATTCATACCTGCCTCATGTACTCATTGCTAGTATACTGCTAGCTCTAATCTACCCACCTTCTTTAACGTGGTTCACCAGCAGATACTATGCACCTGCACTAGGTTTTTTGATGTTTGCTGTTGGGGTTAATTCAAATGAAAATGACTTCCTCGAGGCATTTAAGAGGCCAGCAGAAATTGTCACTGGTTATTTTGGCCAGTTTGCTGTGAAGCCTCTTCTTGGATATCTGTTTTGCATGATTGCAGTAACTGTTTTAAGCCTACCAACAACAGTAGGCGCAGGAATTGTATTGGTGGCTTGTGTTAGTGGTGCCCAGCTTTCAAGTTATGCTACTTTCCTGACGGATCCACAAATGGCACCTTTAAGCATAGTTATGACATCACTGTCCACTGCTTCTGCAGTGTTTGTCACACCACTCTTACTACTGTTGCTCATAGGGAAGAAATTGCCTATAGATGTAAGAGGAATGGTGTACAGCATTACACAGATTGTGGTAGTACCTATCGCAGCTGGCCTGCTTCTAAATCGATTCTATCCTCGTATTTGCAATGTTATTCGACCATTTTTGCCTCCACTATCAGTACTGGTGGCATCTATCTGTGCTGGAGCACCACTCGCCTTTAATGTTGAGACTATGAAATCCCCTCTGGGAGTTGCTATCTTGTTGCTTGTTGTTGCTTTTCATTTGTCATCTTTTATAGCTGGTTATATCCTCAGTGGATTTGTCTTCCGTGATTCTCTTGATGTGAAGGCACTGCAACGAACAATTTCCTTTGAGACAGGAATGCAAAGTAGCCTGCTTGCCTTGGCTCTTGCTAATAAGTTCTTTGAAGATCCAAAAGTGGCTATTCCTCCAGCAATTTCTACTTCAATCATGTCTTTGATGGGATTTGTTCTTGTCCTGATTTGGACCAGAAGAGGAAAGAGAGACATAAAACACAGCTCTTGA >Glyma01g42260.2 sequence type=CDS gene model=Glyma01g42260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAATTCTGGAGATTCTGAAGCAATCAAATTCATACCTGCCTCATGTACTCATTGCTAGTATACTGCTAGCTCTAATCTACCCACCTTCTTTAACGTGGTTCACCAGCAGATACTATGCACCTGCACTAGGTTTTTTGATGTTTGCTGTTGGGGTTAATTCAAATGAAAATGACTTCCTCGAGGCATTTAAGAGGCCAGCAGAAATTGTCACTGGTTATTTTGGCCAGTTTGCTGTGAAGCCTCTTCTTGGATATCTGTTTTGCATGATTGCAGTAACTGTTTTAAGCCTACCAACAACAGTAGGCGCAGGAATTGTATTGGTGGCTTGTGTTAGTGGTGCCCAGCTTTCAAGTTATGCTACTTTCCTGACGGATCCACAAATGGCACCTTTAAGCATAGTTATGACATCACTGTCCACTGCTTCTGCAGTGTTTGTCACACCACTCTTACTACTGTTGCTCATAGGGAAGAAATTGCCTATAGATGTAAGAGGAATGGTGTACAGCATTACACAGATTGTGGTAGTACCTATCGCAGCTGGCCTGCTTCTAAATCGATTCTATCCTCGTATTTGCAATGTTATTCGACCATTTTTGCCTCCACTATCAGTACTGGTGGCATCTATCTGTGCTGGAGCACCACTCGCCTTTAATGTTGAGACTATGAAATCCCCTCTGGGAGTTGCTATCTTGTTGCTTGTTGTTGCTTTTCATTTGTCATCTTTTATAGCTGGTTATATCCTCAGTGGATTTGTCTTCCGTGATTCTCTTGATGTGAAGGCACTGCAACGAACAATTTCCTTTGAGACAGGAATGCAAAGTAGCCTGCTTGCCTTGGCTCTTGCTAATAAGTTCTTTGAAGATCCAAAAGTGGCTATTCCTCCAGCAATTTCTACTTCAATCATGTCTTTGATGGGATTTGTTCTTGTCCTGATTTGGACCAGAAGAGGAAAGAGAGACATAAAACACAGCTCTTGA
>Glyma01g42260.1 sequence type=predicted peptide gene model=Glyma01g42260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MISSGLKLKHFRNVDSLFHFPKSKPPILLPCCPTISSPCSIRFNSHFPYRSTKVPLKCAPLPSSDSLPPDLSDAPTQTEQNSMSILEILKQSNSYLPHVLIASILLALIYPPSLTWFTSRYYAPALGFLMFAVGVNSNENDFLEAFKRPAEIVTGYFGQFAVKPLLGYLFCMIAVTVLSLPTTVGAGIVLVACVSGAQLSSYATFLTDPQMAPLSIVMTSLSTASAVFVTPLLLLLLIGKKLPIDVRGMVYSITQIVVVPIAAGLLLNRFYPRICNVIRPFLPPLSVLVASICAGAPLAFNVETMKSPLGVAILLLVVAFHLSSFIAGYILSGFVFRDSLDVKALQRTISFETGMQSSLLALALANKFFEDPKVAIPPAISTSIMSLMGFVLVLIWTRRGKRDIKHSS* >Glyma01g42260.2 sequence type=predicted peptide gene model=Glyma01g42260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSILEILKQSNSYLPHVLIASILLALIYPPSLTWFTSRYYAPALGFLMFAVGVNSNENDFLEAFKRPAEIVTGYFGQFAVKPLLGYLFCMIAVTVLSLPTTVGAGIVLVACVSGAQLSSYATFLTDPQMAPLSIVMTSLSTASAVFVTPLLLLLLIGKKLPIDVRGMVYSITQIVVVPIAAGLLLNRFYPRICNVIRPFLPPLSVLVASICAGAPLAFNVETMKSPLGVAILLLVVAFHLSSFIAGYILSGFVFRDSLDVKALQRTISFETGMQSSLLALALANKFFEDPKVAIPPAISTSIMSLMGFVLVLIWTRRGKRDIKHSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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