Glyma01g42250 - SoyBase

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Report for Sequence Feature Glyma01g42250

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53558322
stop:	53560642
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g42250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G22830	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). \| chr4:11990296-11991325 REVERSE LENGTH=193	SoyBase	E_val: 3.00E-56	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF10693	PFAM	Protein of unknown function (DUF2499)	JGI		ISS
UniRef100_G7KEW0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ycf49-like protein n=1 Tax=Medicago truncatula RepID=G7KEW0_MEDTR	SoyBase	E_val: 3.00E-75	ISS
UniRef100_I1JA01	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JA01_SOYBN	SoyBase	E_val: 2.00E-118	ISS

Expression Patterns of Glyma01g42250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g42250 not represented in the dataset	Glyma01g42250 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g42250

Paralog	Evidence	Comments
Glyma11g03110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g42250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g213300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g42250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g42250

Limit To All Plant Sequences

>Glyma01g42250.4   sequence type=transcript   gene model=Glyma01g42250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGAAGGAGAAAGGGTTATCCGAAGCGATGGCAGCGGCAACGTTGTACTTGGCAAAACCATCTTGGTCTTATACTCCCAAAATTCCGTCGTTGCCAAGAGTGAGGGACAGTGGAATTGGAACGGTTAAAACCAAAGTGAAAGCGAAAGCGGGTATCCTGGGACTGGGTCTGTTCCACTTCCTCAACTTCGTCGAACCCGGTTCATGTCTCCAACTGCAATTCCACGAACCCCCCAATGCCCTCTCTTTGCCCACATGGGCCATTCACGTGTCCAGTGTCGCTGAATGGATTATAGCTATGGCTTTGGTGTGGCAATACGGAGAAAAATCTGGATACCCAGCTTGGAAGGGCCTTTCTTGGGGAATGGTACCTCTACTTGGTGGAGCTTTTTGTGCGTGTACATGGCATTTCTTTTATAACTCCGACTCCCTCGAGGTATTGGTGGCTCTTCAGGCGGCACTGACTATTATAGGTAATGCCACAATGTGCATAGCTGCATATCGGATATACAAATCATCCCAAGACTCCTAGAACTTCTGAATTGCATGGATGTGAGAATCTGGAAGCATGTATATACGCCTCAATGAAAATCAAAGGCTTTTGCTGATTGGATAAGCATGCTAGGAGATGTTCATTCTTTCTGAATTTTATTCACAGTTGGTTCTTTGATTTTATGTAAGGTAGCTTTACCTGAAATTGAGCTTTGGACTTCTTACACTTAAATAAAAATATTATTTT

>Glyma01g42250.5   sequence type=transcript   gene model=Glyma01g42250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTACAAATGACCAATGTTTAATAATGTACATTTTTAGAACATCAAAATAGGCGTGGAAATGAAATGAAGGAAGGAGAAAGGGTTATCCGAAGCGATGGCAGCGGCAACGTTGTACTTGGCAAAACCATCTTGGTCTTATACTCCCAAAATTCCGTCGTTGCCAAGAGTGAGGGACAGTGGAATTGGAACGGTTAAAACCAAAGTGAAAGCGAAAGCGGGTATCCTGGGACTGGGTCTGTTCCACTTCCTCAACTTCGTCGAACCCGGTTCATGTCTCCAACTGCAATTCCACGAACCCCCCAATGCCCTCTCTTTGCCCACATGGGCCATTCACGTGTCCAGTGTCGCTGAATGGATTATAGCTATGGCTTTGGTGTGGCAATACGGAGAAAAATCTGGATACCCAGCTTGGAAGGGCCTTTCTTGGGGAATGGTACCTCTACTTGGTGGAGCTTTTTGTGCGTGTACATGGCATTTCTTTTATAACTCCGACTCCCTCGAGGTATTGGTGGCTCTTCAGGCGGCACTGACTATTATAGGTAATGCCACAATGTGCATAGCTGCATATCGGATATACAAATCATCCCAAGACTCCTAGAACTTCTGAATTGCATGGATGTGAGAATCTGGAAGCATGTATATACGCCTCAATGAAAATCAAAGGCTTTTGCTGATTGGTAAAAATTATCCTTCATGGGCTGCATGAATGTGAGAAGTGTCTGCTGGCATACCAAAATATTTTAGTGACGAAGATGGAATTCATGTGTCCTGATTTCTGTTTCCTATTGTCTTTTATTTTCTTGTGACAGGATAAGCATGCTAGGAGATGTTCATTCTTTCTGAATTTTATTCACAGTTGGTTCTTTGATTTTATGTAAGGTAGCTTTACCTGAAATTGAGCTTTGGACTTCTTACACTTAAATAAAAATATTATTTTATAAATTTTTTGGGCTTTG

>Glyma01g42250.6   sequence type=transcript   gene model=Glyma01g42250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTACAAATGACCAATGTTTAATAATGTACATTTTTAGAACATCAAAATAGGCGTGGAAATGAAATGAAGGAAGGAGAAAGGGTTATCCGAAGCGATGGCAGCGGCAACGTTGTACTTGGCAAAACCATCTTGGTCTTATACTCCCAAAATTCCGTCGTTGCCAAGAGTGAGGGACAGTGGAATTGGAACGGTTAAAACCAAAGTGAAAGCGAAAGCGGGTATCCTGGGACTGGGTCTGTTCCACTTCCTCAACTTCGTCGAACCCGGTTCATGTCTCCAACTGCAATTCCACGAACCCCCCAATGCCCTCTCTTTGCCCACATGGGCCATTCACGTGTCCAGTGTCGCTGAATGGATTATAGCTATGGCTTTGGTGTGGCAATACGGAGAAAAATCTGGATACCCAGCTTGGAAGGGCCTTTCTTGGGGAATGGTACCTCTACTTGGTGGAGCTTTTTGTGCGTGTACATGGCATTTCTTTTATAACTCCGACTCCCTCGAGGCGGCACTGACTATTATAGGTAATGCCACAATGTGCATAGCTGCATATCGGATATACAAATCATCCCAAGACTCCTAGAACTTCTGAATTGCATGGATGTGAGAATCTGGAAGCATGTATATACGCCTCAATGAAAATCAAAGGCTTTTGCTGATTGGTAAAAATTATCCTTCATGGGCTGCATGAATGTGAGAAGTGTCTGCTGGCATACCAAAATATTTTAGTGACGAAGATGGAATTCATGTGTCCTGATTTCTGTTTCCTATTGTCTTTTATTTTCTTGTGACAGGATAAGCATGCTAGGAGATGTTCATTCTTTCTGAATTTTATTCACAGTTGGTTCTTTGATTTTATGTAAGGTAGCTTTACCTGAAATTGAGCTTTGGACTTCTTACACTTAAATAAAAATATTATTTTATAAATTTTTTGGGCTTTG

Coding sequences of Glyma01g42250

Limit To All Plant Sequences

>Glyma01g42250.3   sequence type=CDS   gene model=Glyma01g42250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCGGCAACGTTGTACTTGGCAAAACCATCTTGGTCTTATACTCCCAAAATTCCGTCGTTGCCAAGAGTGAGGGACAGTGGAATTGGAACGGTTAAAACCAAAGTGAAAGCGAAAGCGGGTATCCTGGGACTGGGTCTGTTCCACTTCCTCAACTTCGTCGAACCCGGTTCATGTCTCCAACTGCAATTCCACGAACCCCCCAATGCCCTCTCTTTGCCCACATGGGCCATTCACGTGTCCAGTGTCGCTGAATGGATTATAGCTATGGCTTTGGTGTGGCAATACGGAGAAAAATCTGGATACCCAGCTTGGAAGGGCCTTTCTTGGGGAATGGTCAGTCACTTCACTTTCTTCACTCCATTTTTTGTTCCTCCATCTCTCATTTTCTGA

>Glyma01g42250.4   sequence type=CDS   gene model=Glyma01g42250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCGGCAACGTTGTACTTGGCAAAACCATCTTGGTCTTATACTCCCAAAATTCCGTCGTTGCCAAGAGTGAGGGACAGTGGAATTGGAACGGTTAAAACCAAAGTGAAAGCGAAAGCGGGTATCCTGGGACTGGGTCTGTTCCACTTCCTCAACTTCGTCGAACCCGGTTCATGTCTCCAACTGCAATTCCACGAACCCCCCAATGCCCTCTCTTTGCCCACATGGGCCATTCACGTGTCCAGTGTCGCTGAATGGATTATAGCTATGGCTTTGGTGTGGCAATACGGAGAAAAATCTGGATACCCAGCTTGGAAGGGCCTTTCTTGGGGAATGGTACCTCTACTTGGTGGAGCTTTTTGTGCGTGTACATGGCATTTCTTTTATAACTCCGACTCCCTCGAGGTATTGGTGGCTCTTCAGGCGGCACTGACTATTATAGGTAATGCCACAATGTGCATAGCTGCATATCGGATATACAAATCATCCCAAGACTCCTAG

>Glyma01g42250.5   sequence type=CDS   gene model=Glyma01g42250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCGGCAACGTTGTACTTGGCAAAACCATCTTGGTCTTATACTCCCAAAATTCCGTCGTTGCCAAGAGTGAGGGACAGTGGAATTGGAACGGTTAAAACCAAAGTGAAAGCGAAAGCGGGTATCCTGGGACTGGGTCTGTTCCACTTCCTCAACTTCGTCGAACCCGGTTCATGTCTCCAACTGCAATTCCACGAACCCCCCAATGCCCTCTCTTTGCCCACATGGGCCATTCACGTGTCCAGTGTCGCTGAATGGATTATAGCTATGGCTTTGGTGTGGCAATACGGAGAAAAATCTGGATACCCAGCTTGGAAGGGCCTTTCTTGGGGAATGGTACCTCTACTTGGTGGAGCTTTTTGTGCGTGTACATGGCATTTCTTTTATAACTCCGACTCCCTCGAGGTATTGGTGGCTCTTCAGGCGGCACTGACTATTATAGGTAATGCCACAATGTGCATAGCTGCATATCGGATATACAAATCATCCCAAGACTCCTAG

>Glyma01g42250.6   sequence type=CDS   gene model=Glyma01g42250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCGGCAACGTTGTACTTGGCAAAACCATCTTGGTCTTATACTCCCAAAATTCCGTCGTTGCCAAGAGTGAGGGACAGTGGAATTGGAACGGTTAAAACCAAAGTGAAAGCGAAAGCGGGTATCCTGGGACTGGGTCTGTTCCACTTCCTCAACTTCGTCGAACCCGGTTCATGTCTCCAACTGCAATTCCACGAACCCCCCAATGCCCTCTCTTTGCCCACATGGGCCATTCACGTGTCCAGTGTCGCTGAATGGATTATAGCTATGGCTTTGGTGTGGCAATACGGAGAAAAATCTGGATACCCAGCTTGGAAGGGCCTTTCTTGGGGAATGGTACCTCTACTTGGTGGAGCTTTTTGTGCGTGTACATGGCATTTCTTTTATAACTCCGACTCCCTCGAGGCGGCACTGACTATTATAGGTAATGCCACAATGTGCATAGCTGCATATCGGATATACAAATCATCCCAAGACTCCTAG

Predicted protein sequences of Glyma01g42250

Limit To All Plant Sequences

>Glyma01g42250.3   sequence type=predicted peptide   gene model=Glyma01g42250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAATLYLAKPSWSYTPKIPSLPRVRDSGIGTVKTKVKAKAGILGLGLFHFLNFVEPGSCLQLQFHEPPNALSLPTWAIHVSSVAEWIIAMALVWQYGEKSGYPAWKGLSWGMVSHFTFFTPFFVPPSLIF*

>Glyma01g42250.4   sequence type=predicted peptide   gene model=Glyma01g42250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAATLYLAKPSWSYTPKIPSLPRVRDSGIGTVKTKVKAKAGILGLGLFHFLNFVEPGSCLQLQFHEPPNALSLPTWAIHVSSVAEWIIAMALVWQYGEKSGYPAWKGLSWGMVPLLGGAFCACTWHFFYNSDSLEVLVALQAALTIIGNATMCIAAYRIYKSSQDS*

>Glyma01g42250.5   sequence type=predicted peptide   gene model=Glyma01g42250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAATLYLAKPSWSYTPKIPSLPRVRDSGIGTVKTKVKAKAGILGLGLFHFLNFVEPGSCLQLQFHEPPNALSLPTWAIHVSSVAEWIIAMALVWQYGEKSGYPAWKGLSWGMVPLLGGAFCACTWHFFYNSDSLEVLVALQAALTIIGNATMCIAAYRIYKSSQDS*

>Glyma01g42250.6   sequence type=predicted peptide   gene model=Glyma01g42250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAATLYLAKPSWSYTPKIPSLPRVRDSGIGTVKTKVKAKAGILGLGLFHFLNFVEPGSCLQLQFHEPPNALSLPTWAIHVSSVAEWIIAMALVWQYGEKSGYPAWKGLSWGMVPLLGGAFCACTWHFFYNSDSLEAALTIIGNATMCIAAYRIYKSSQDS*

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