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Report for Sequence Feature Glyma01g42025

Feature Type:gene_model
Chromosome:Gm01
Start:53396286
stop:53397210
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g42025
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G62770AT Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily protein | chr1:23246085-23246836 REVERSE LENGTH=204 SoyBaseE_val: 7.00E-63ISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010089GO-bp Annotation by Michelle Graham. GO Biological Process: xylem development SoyBaseN/AISS
GO:0004857GO-mf Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity SoyBaseN/AISS
GO:0030599GO-mf Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity SoyBaseN/AISS
GO:0046910GO-mf Annotation by Michelle Graham. GO Molecular Function: pectinesterase inhibitor activity SoyBaseN/AISS
PTHR22931Panther PHOSPHOENOLPYRUVATE DIKINASE-RELATED JGI ISS
PTHR22931:SF14Panther INVERTASE/PECTIN METHYLESTERASE INHIBITOR FAMILY P JGI ISS
PF04043PFAM Plant invertase/pectin methylesterase inhibitor JGI ISS
UniRef100_G7KG88UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=2 Tax=Medicago truncatula RepID=G7KG88_MEDTR SoyBaseE_val: 2.00E-89ISS
UniRef100_UPI000189DA5FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000189DA5F related cluster n=1 Tax=unknown RepID=UPI000189DA5F SoyBaseE_val: 3.00E-147ISS

Expression Patterns of Glyma01g42025
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g42025 not represented in the dataset
Glyma01g42025 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g42025 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g211300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g42025
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g42025
>Glyma01g42025.1   sequence type=CDS   gene model=Glyma01g42025   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTACTACACTCATGAAGCTTGCTTTCATGCTTCTCATGAACCTTGTTATCTGCAGCGCAGAATCTTCCATCGGCAGAAAGTCCAATCCTAACCCAGAAGAGTTCGTGAAGTCCTCGTGCAGGGCAACACGGTACCCTGTTCTATGCGTCAAGTCTCTGTTGGCCTACGCAAGCGTGATTCGCCGAAGCGACCGACAACTAGCCACGACCGCTCTGTCGGTAAGCATATCGAGGAGCCGATCCTCCGCATGGTTGGTGAAGAAGATGTTGAAAGCGAGAGGCATGAAGCCTAGAGAATACAGAGCGGTGCAAGACTGCGTGGAGAACATTGGTGACAGCGTGGACCGTCTCAGGCAATCGGTTACGGAGTTGGGGCGGACGGGCGAGGACTTCGTCTGGCACATGAGCAACGTCCAGACTTGGGTCAGCGCTGCCCTCACCGACGACAGCACTTGTCTTGACGGCTTCGCTGGTTCCGCCATGAACGGAAACGTGAAGGCTCTTATAAAGGACAGGATTGTCCACGTTGCTCAAGTCACAAGCAACGCTCTCGCTTTGGTTAACCGCTTTGCCTCAAGACACCCAAGTGCTACTCAAACTCCTTAA
Predicted protein sequences of Glyma01g42025
>Glyma01g42025.1   sequence type=predicted peptide   gene model=Glyma01g42025   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTTLMKLAFMLLMNLVICSAESSIGRKSNPNPEEFVKSSCRATRYPVLCVKSLLAYASVIRRSDRQLATTALSVSISRSRSSAWLVKKMLKARGMKPREYRAVQDCVENIGDSVDRLRQSVTELGRTGEDFVWHMSNVQTWVSAALTDDSTCLDGFAGSAMNGNVKALIKDRIVHVAQVTSNALALVNRFASRHPSATQTP*






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