Glyma01g41990 - SoyBase

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Report for Sequence Feature Glyma01g41990

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53377183
stop:	53382082
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g41990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12240	AT	Annotation by Michelle Graham. TAIR10: Glycosyl hydrolases family 32 protein \| chr1:4153699-4157457 FORWARD LENGTH=664	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0071370	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to gibberellin stimulus	SoyBase	N/A	ISS
GO:0080022	GO-bp	Annotation by Michelle Graham. GO Biological Process: primary root development	SoyBase	N/A	ISS
GO:0000325	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0004564	GO-mf	Annotation by Michelle Graham. GO Molecular Function: beta-fructofuranosidase activity	SoyBase	N/A	ISS
GO:0004575	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose alpha-glucosidase activity	SoyBase	N/A	ISS
KOG0228	KOG	Beta-fructofuranosidase (invertase)	JGI		ISS
PF00251	PFAM	Glycosyl hydrolases family 32 N-terminal domain	JGI		ISS
PF08244	PFAM	Glycosyl hydrolases family 32 C terminal	JGI		ISS
PF11837	PFAM	Domain of unknown function (DUF3357)	JGI		ISS
UniRef100_G7JK43	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acid beta-fructofuranosidase n=1 Tax=Medicago truncatula RepID=G7JK43_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337AEC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337AEC related cluster n=1 Tax=unknown RepID=UPI0002337AEC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g41990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g41990

Paralog	Evidence	Comments
Glyma11g03360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g41990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g211000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g41990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g41990

Limit To All Plant Sequences

>Glyma01g41990.1   sequence type=CDS   gene model=Glyma01g41990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGCCCCAACACAAGAACCAGCTCCTCGTCTGATTCCGAACTCCCTTGCTCTAATTACATTCCGGTACCCGATGGACCCCACTCTCCCGCAGAACCAGCTCGAAGAGAGGTGATTGTAATCTTTTGTGGGTTGCTGGTGCTTGTGTCCTTGGTGGCTTTCAATGGTTACAGCTGGGCGCATTCAAATGGACATGATGGAGATCATCATCATGCGTCATCATCATTGCCAACAACGTTGTTAACAGTAACACCCAATGAATTGGAACTGAGCCCCGACACAGTGCCATGGTCAACATGGCAGACGACGCTTTCACGTGGCGTGTCTGCAGGGGTCTCGGAGAAGTCCAGCTGGCTATTCAACAGCAACAATGGGAACGGGGAATCGTATCCTTGGAACAATAGCATGCTGTCATGGCAGAGAACAGCTTACCATTTCCAACCTGAGAAGAATTGGATGAACGATCCTAATGGTCCAATGTACTACAAAGGGTGGTATCACTTCTTCTACCAGTACAATCCAAACGGTGCAGTTTGGGGTGACATAGTTTGGGGACACGCTGTGTCAAGGGACATGATTCACTGGTTTCACCTTCCACTTGCAATGGTGGCTGATCAATGGTATGACAAAAACGGTGTGTGGACAGGCTCTGCCACCATCTTACCCGATGGTCAAGTCATCATGCTATACACTGGTTCCACCAACGAGTCAATGCAAGTGCAAAACCTTGCATACCCTGCAGACCCCTCTGATCCCCTCCTTGTTGATTGGATCAAATACCCTGCAAATCCTGTTCTATTCCCACCACCTGGCATTGATGCCAAAGATTTTCGTGACCCCACCACTGCATGGATCACCTCTGAAGGAAAGTGGCGCATCAGTATTGGTTCCAAGCTTAACAAAACTGGCATTGCCTTGGTTTATGATACCAATGACTTCAAGACCTTTGAGCGTGTGGAGGGAGTGCTTCATGTTGTCCCTGGCACTGGCATGTGGGAGTGTGTTGACTTTTTCCCTGTATCTAGCAAGGGTGAAAATGGCCTTGATACTTCAATCAATGGGGAGAATGTGAAGCATGTGGTAAAGGTTAGCTTGGATGATGATAGACATGATTACTATGCACTCGGGACTTACGATGAGAAGAATGTTAAGTTCACACCTGATGACTTCAACAACGATGTTGGTATTGGACTCAGATATGACTATGGTATATTTTATGCATCCAAGACATTTTATGATCAGAGTAAGGGGAGGAGAGTGTTGTGGGGTTGGATTGGAGAGTCTGATAGCGAATACGCTGACGTGGCCAAAGGTTGGGCATCAGTTCAGGGTATTCCAAGAACAGTGGCACTTGATAAGAAAACTGGTAGCAACTTAATTCAATGGCCTGTGGCAGAGGTAGAGAGTTTGAGATTGAGAAGCGACGAGTTTCAAAATTTGAAGGTGAAGCCAGGGTCAGTGGTGCCACTAGAAATTGGAACAGCTGCACAGTTGGACATTGTAGCTGAGTTTGAGATAGATAAGAAGGCCTTGGAGAAGACAGGCCAGTCCAATAAAGAGTATAAGTGTAGCACTAGTGGTGGATCAACTGAGCGTGGTACCATAGGACCTTTTGGTCTTCTAGTTTTGGCAGATGATGATCTTTCTGAATACACTCCCACTTACTTTTATGTCGTCAAAGGAAGCCATGGACAACTTAAAACTTCCTTCTGCTCTGATCAATCAAGGTCTTCTCTAGCAACTGATGTTAGTAAGAAAATCTTTGGAAGCTTTGTTCCAGTACTAAAAGACGAAAAGTTGTCCGTAAGGATATTGGTGGACCATTCTATAGTGGAAAGCTTTGCTCAAGGTGGAAGGACGTGTGTAACATCTCGAGTTTATCCAACGAAGGCAATCTATGGAGCTGCTAGATTGTTTTTATTCAATAATGCTACTGAGGCCACTGTGACTGCTTCAGTTAAGGTTTGGCAAATGAATTCTGCATTCATACGCCCATTCCACCCTGACCAAAGCAATTCATTTTAA

Predicted protein sequences of Glyma01g41990

Limit To All Plant Sequences

>Glyma01g41990.1   sequence type=predicted peptide   gene model=Glyma01g41990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSPNTRTSSSSDSELPCSNYIPVPDGPHSPAEPARREVIVIFCGLLVLVSLVAFNGYSWAHSNGHDGDHHHASSSLPTTLLTVTPNELELSPDTVPWSTWQTTLSRGVSAGVSEKSSWLFNSNNGNGESYPWNNSMLSWQRTAYHFQPEKNWMNDPNGPMYYKGWYHFFYQYNPNGAVWGDIVWGHAVSRDMIHWFHLPLAMVADQWYDKNGVWTGSATILPDGQVIMLYTGSTNESMQVQNLAYPADPSDPLLVDWIKYPANPVLFPPPGIDAKDFRDPTTAWITSEGKWRISIGSKLNKTGIALVYDTNDFKTFERVEGVLHVVPGTGMWECVDFFPVSSKGENGLDTSINGENVKHVVKVSLDDDRHDYYALGTYDEKNVKFTPDDFNNDVGIGLRYDYGIFYASKTFYDQSKGRRVLWGWIGESDSEYADVAKGWASVQGIPRTVALDKKTGSNLIQWPVAEVESLRLRSDEFQNLKVKPGSVVPLEIGTAAQLDIVAEFEIDKKALEKTGQSNKEYKCSTSGGSTERGTIGPFGLLVLADDDLSEYTPTYFYVVKGSHGQLKTSFCSDQSRSSLATDVSKKIFGSFVPVLKDEKLSVRILVDHSIVESFAQGGRTCVTSRVYPTKAIYGAARLFLFNNATEATVTASVKVWQMNSAFIRPFHPDQSNSF*

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