Glyma01g41920 - SoyBase

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Report for Sequence Feature Glyma01g41920

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53285698
stop:	53287911
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g41920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17260	AT	Annotation by Michelle Graham. TAIR10: Lactate/malate dehydrogenase family protein \| chr4:9674057-9675309 FORWARD LENGTH=353	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0044262	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004457	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lactate dehydrogenase activity	SoyBase	N/A	ISS
GO:0004459	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-lactate dehydrogenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016616	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	SoyBase	N/A	ISS
KOG1495	KOG	Lactate dehydrogenase	JGI		ISS
PTHR11540	Panther	MALATE AND LACTATE DEHYDROGENASE	JGI		ISS
PTHR11540:SF3	Panther	MALATE DEHYDROGENASE-RELATED	JGI		ISS
PF00056	PFAM	lactate/malate dehydrogenase, NAD binding domain	JGI		ISS
PF02866	PFAM	lactate/malate dehydrogenase, alpha/beta C-terminal domain	JGI		ISS
UniRef100_I1J9W9	UniRef	Annotation by Michelle Graham. Best UniRef hit: L-lactate dehydrogenase n=1 Tax=Glycine max RepID=I1J9W9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1J9W9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: L-lactate dehydrogenase n=1 Tax=Glycine max RepID=I1J9W9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g41920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41920 not represented in the dataset	Glyma01g41920 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g41920

Paralog	Evidence	Comments
Glyma11g03441	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g41920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g210400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g41920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g41920

Limit To All Plant Sequences

>Glyma01g41920.2   sequence type=transcript   gene model=Glyma01g41920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGAAAAGCATTACGTTGTAACTTGTTTCCAAAGCCAAGACTCAAAAACCATTCAAAAGGAATCCAAAGAATGGCAATGCACAAGAGCAGTTCAGGTTCAGCATTGGGTCCGGGAGGCTTGGACTTAACTCAAGCCTTCTTCAAGTCGATCATGAACGCTGCAGCTTCTTCTCCCACCAAACGCCACAACAAAATCTCTGTTGTTGGGGCAGGCAACGTGGGAATGGCCATAGCCCAAACCATCCTCACTCAGGATCTCACCGACGAGCTTGTGCTCGTGGATGCAATTCCTGACAAACTCCGCGGCGAGATGCTTGACCTCCAGCACGCCGCTGCCTTCCTCCCCCGCACCAGAATTCAGGCCTCCACCGATTACTCGGTCACGCTGGGCTCTGACCTCTGCATTGTCACAGCCGGGGCTCGTCAAATTAATGGCGAGTCCCGGCTCAATCTCCTACAGAGGAATGTCACACTCTTTCAGAAAATCATACCTCCTTTGGCTCGTTACTCCCCAGACACCATTCTTCTCATCGTTTCAAATCCCGTGGACGTGCTCACTTACGTGGCATGGAAGCTTTCAGGGTTCCCTTCAAACCGCGTCATTGGCTCCGGCACTAACTTGGACTCTTCCCGTTTTCGTTTCCTCATTGCTGATCATCTTGATGTCAACGCTCAAGATGTCCAGGCTTTTATAGTGGGGGAACATGGTGACAGCTCAGTGGCTCTGTGGTCTAGTATTAGTGTTGGGGGTGTTCCGGTGCTGAGTTTTTTGGAGAAGCAAGAAATTGCGTATGAGAAGGAAATGTTGGAGAACATACACAAGGAAGTTATACAGGGTGCTTATGAAGTTATCAATCTGAAAGGGTACACTTCTTGGGCAATAGGATACTCGGTGGCAAACTTGGCACGAACCATTCTCAGGGACCAAAGGAGGGTCCACCCTGTCTCGGTTCTTGCAAAGGGTTTTTATGGCATTGATGATGGGGAAGTGTTTCTCAGCTTGCCTGCACAACTAGGAAGAGGAGGGGTTTTGGGTGTAACCAATGTGCACTTGACTGAAGAAGAGACACAGAGGCTTAGGGACTCAGCTAAGACAATCCTCCAAGTGCAGAATCAGTTGGTTATTTGAATTTTTTTTTCAAGCACCCTCTGATGAACTCACCTGGAAATTAGTAACTCATGTATCAATGTTATGGTTGTTTATTATCCTTTTCTTTTCTTTTCTTTTTTCCAAAATATTGTTTGGTCGTCTATGTGTACGTACTGAGAAATTTCTTTTCTGTTGTTGTTGTTGTTATAATAAACAGAGATGCATTTGCTATTTACTATAAAATTCCAGTCAAGCAATTTGCTATTTTTCTATAATTTAAATTGAATTAACGAAAAGTTATTGATTTG

>Glyma01g41920.3   sequence type=transcript   gene model=Glyma01g41920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTAACGTATTTCCTTGGCGAATCCAGAAACTATAGAAAGTTCTTAATCCTTAACGAAACATATTTGGTTGGTGAATCCAGAACTTTAGAAAATTCAAAGGCAGTACGAGACATTCTCCATTTCTCCCCAATCAACATATTGTAGCAAGCTACGGAGAGACATGAGGTGCAATGGACCCACACAAAGGTTTGGATCTCAACCACCCACGTCTCATTTACGACGAATTAACAAAGCACGGGATTGACTATTGAAAAGCATTACGTTGTAACTTGTTTCCAAAGCCAAGACTCAAAAACCATTCAAGAATCCAAAGAATGGCAATGCACAAGAGCAGTTCAGGTTCAGCATTGGGTCCGGGAGGCTTGGACTTAACTCAAGCCTTCTTCAAGTCGATCATGAACGCTGCAGCTTCTTCTCCCACCAAACGCCACAACAAAATCTCTGTTGTTGGGGCAGGCAACGTGGGAATGGCCATAGCCCAAACCATCCTCACTCAGGATCTCACCGACGAGCTTGTGCTCGTGGATGCAATTCCTGACAAACTCCGCGGCGAGATGCTTGACCTCCAGCACGCCGCTGCCTTCCTCCCCCGCACCAGAATTCAGGCCTCCACCGATTACTCGGTCACGCTGGGCTCTGACCTCTGCATTGTCACAGCCGGGGCTCGTCAAATTAATGGCGAGTCCCGGCTCAATCTCCTACAGAGGAATGTCACACTCTTTCAGAAAATCATACCTCCTTTGGCTCGTTACTCCCCAGACACCATTCTTCTCATCGTTTCAAATCCCGTGGACGTGCTCACTTACGTGGCATGGAAGCTTTCAGGGTTCCCTTCAAACCGCGTCATTGGCTCCGGCACTAACTTGGACTCTTCCCGTTTTCGTTTCCTCATTGCTGATCATCTTGATGTCAACGCTCAAGATGTCCAGGCTTTTATAGTGGGGGAACATGGTGACAGCTCAGTGGCTCTGTGGTCTAGTATTAGTGTTGGGGGTGTTCCGGTGCTGAGTTTTTTGGAGAAGCAAGAAATTGCGTATGAGAAGGAAATGTTGGAGAACATACACAAGGAAGTTATACAGGGTGCTTATGAAGTTATCAATCTGAAAGGGTACACTTCTTGGGCAATAGGATACTCGGTGGCAAACTTGGCACGAACCATTCTCAGGGACCAAAGGAGGGTCCACCCTGTCTCGGTTCTTGCAAAGGGTTTTTATGGCATTGATGATGGGGAAGTGTTTCTCAGCTTGCCTGCACAACTAGGAAGAGGAGGGGTTTTGGGTGTAACCAATGTGCACTTGACTGAAGAAGAGACACAGAGGCTTAGGGACTCAGCTAAGACAATCCTCCAAGTGCAGAATCAGTTGGTTATTTGAATTTTTTTTTCAAGCACCCTCTGATGAACTCACCTGGAAATTAGTAACTCATGTATCAATGTTATGGTTGTTTATTATCCTTTTCTTTTCTTTTCTTTTTTCCAAAATATTGTTTGGTCGTCTATGTGTACGTACTGAGAAATTTCTTTTCTGTTGTTGTTGTTGTTATAATAAACAGAGATGCATTTGCTATTTACTATAAAATTCCAGTCAAGCAATTTGCTATTTTTCTATAATTTAAATTGAATTAACGAAAAGTTATTGATTTG

Coding sequences of Glyma01g41920

Limit To All Plant Sequences

>Glyma01g41920.1   sequence type=CDS   gene model=Glyma01g41920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGCACAAGAGCAGTTCAGGTTCAGCATTGGGTCCGGGAGGCTTGGACTTAACTCAAGCCTTCTTCAAGTCGATCATGAACGCTGCAGCTTCTTCTCCCACCAAACGCCACAACAAAATCTCTGTTGTTGGGGCAGGCAACGTGGGAATGGCCATAGCCCAAACCATCCTCACTCAGGATCTCACCGACGAGCTTGTGCTCGTGGATGCAATTCCTGACAAACTCCGCGGCGAGATGCTTGACCTCCAGCACGCCGCTGCCTTCCTCCCCCGCACCAGAATTCAGGCCTCCACCGATTACTCGGTCACGCTGGGCTCTGACCTCTGCATTGTCACAGCCGGGGCTCGTCAAATTAATGGCGAGTCCCGGCTCAATCTCCTACAGAGGAATGTCACACTCTTTCAGAAAATCATACCTCCTTTGGCTCGTTACTCCCCAGACACCATTCTTCTCATCGTTTCAAATCCCGTGGACGTGCTCACTTACGTGGCATGGAAGCTTTCAGGGTTCCCTTCAAACCGCGTCATTGGCTCCGGCACTAACTTGGACTCTTCCCGTTTTCGTTTCCTCATTGCTGATCATCTTGATGTCAACGCTCAAGATGTCCAGGCTTTTATAGTGGGGGAACATGGTGACAGCTCAGTGGCTCTGTGGTCTAGTATTAGTGTTGGGGGTGTTCCGGTGCTGAGTTTTTTGGAGAAGCAAGAAATTGCGTATGAGAAGGAAATGTTGGAGAACATACACAAGGAAGTTATACAGGGTGCTTATGAAGTTATCAATCTGAAAGGGTACACTTCTTGGGCAATAGGATACTCGGTGGCAAACTTGGCACGAACCATTCTCAGGGACCAAAGGAGGGTCCACCCTGTCTCGGTTCTTGCAAAGGGTTTTTATGGCATTGATGATGGGGAAGTGTTTCTCAGCTTGCCTGCACAACTAGGAAGAGGAGGGGTTTTGGGTGTAACCAATGTGCACTTGACTGAAGAAGAGACACAGAGGCTTAGGGACTCAGCTAAGACAATCCTCCAAGTGCAGAATCAGTTGGTTATTTGA

>Glyma01g41920.2   sequence type=CDS   gene model=Glyma01g41920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGCACAAGAGCAGTTCAGGTTCAGCATTGGGTCCGGGAGGCTTGGACTTAACTCAAGCCTTCTTCAAGTCGATCATGAACGCTGCAGCTTCTTCTCCCACCAAACGCCACAACAAAATCTCTGTTGTTGGGGCAGGCAACGTGGGAATGGCCATAGCCCAAACCATCCTCACTCAGGATCTCACCGACGAGCTTGTGCTCGTGGATGCAATTCCTGACAAACTCCGCGGCGAGATGCTTGACCTCCAGCACGCCGCTGCCTTCCTCCCCCGCACCAGAATTCAGGCCTCCACCGATTACTCGGTCACGCTGGGCTCTGACCTCTGCATTGTCACAGCCGGGGCTCGTCAAATTAATGGCGAGTCCCGGCTCAATCTCCTACAGAGGAATGTCACACTCTTTCAGAAAATCATACCTCCTTTGGCTCGTTACTCCCCAGACACCATTCTTCTCATCGTTTCAAATCCCGTGGACGTGCTCACTTACGTGGCATGGAAGCTTTCAGGGTTCCCTTCAAACCGCGTCATTGGCTCCGGCACTAACTTGGACTCTTCCCGTTTTCGTTTCCTCATTGCTGATCATCTTGATGTCAACGCTCAAGATGTCCAGGCTTTTATAGTGGGGGAACATGGTGACAGCTCAGTGGCTCTGTGGTCTAGTATTAGTGTTGGGGGTGTTCCGGTGCTGAGTTTTTTGGAGAAGCAAGAAATTGCGTATGAGAAGGAAATGTTGGAGAACATACACAAGGAAGTTATACAGGGTGCTTATGAAGTTATCAATCTGAAAGGGTACACTTCTTGGGCAATAGGATACTCGGTGGCAAACTTGGCACGAACCATTCTCAGGGACCAAAGGAGGGTCCACCCTGTCTCGGTTCTTGCAAAGGGTTTTTATGGCATTGATGATGGGGAAGTGTTTCTCAGCTTGCCTGCACAACTAGGAAGAGGAGGGGTTTTGGGTGTAACCAATGTGCACTTGACTGAAGAAGAGACACAGAGGCTTAGGGACTCAGCTAAGACAATCCTCCAAGTGCAGAATCAGTTGGTTATTTGA

>Glyma01g41920.3   sequence type=CDS   gene model=Glyma01g41920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAATGCACAAGAGCAGTTCAGGTTCAGCATTGGGTCCGGGAGGCTTGGACTTAACTCAAGCCTTCTTCAAGTCGATCATGAACGCTGCAGCTTCTTCTCCCACCAAACGCCACAACAAAATCTCTGTTGTTGGGGCAGGCAACGTGGGAATGGCCATAGCCCAAACCATCCTCACTCAGGATCTCACCGACGAGCTTGTGCTCGTGGATGCAATTCCTGACAAACTCCGCGGCGAGATGCTTGACCTCCAGCACGCCGCTGCCTTCCTCCCCCGCACCAGAATTCAGGCCTCCACCGATTACTCGGTCACGCTGGGCTCTGACCTCTGCATTGTCACAGCCGGGGCTCGTCAAATTAATGGCGAGTCCCGGCTCAATCTCCTACAGAGGAATGTCACACTCTTTCAGAAAATCATACCTCCTTTGGCTCGTTACTCCCCAGACACCATTCTTCTCATCGTTTCAAATCCCGTGGACGTGCTCACTTACGTGGCATGGAAGCTTTCAGGGTTCCCTTCAAACCGCGTCATTGGCTCCGGCACTAACTTGGACTCTTCCCGTTTTCGTTTCCTCATTGCTGATCATCTTGATGTCAACGCTCAAGATGTCCAGGCTTTTATAGTGGGGGAACATGGTGACAGCTCAGTGGCTCTGTGGTCTAGTATTAGTGTTGGGGGTGTTCCGGTGCTGAGTTTTTTGGAGAAGCAAGAAATTGCGTATGAGAAGGAAATGTTGGAGAACATACACAAGGAAGTTATACAGGGTGCTTATGAAGTTATCAATCTGAAAGGGTACACTTCTTGGGCAATAGGATACTCGGTGGCAAACTTGGCACGAACCATTCTCAGGGACCAAAGGAGGGTCCACCCTGTCTCGGTTCTTGCAAAGGGTTTTTATGGCATTGATGATGGGGAAGTGTTTCTCAGCTTGCCTGCACAACTAGGAAGAGGAGGGGTTTTGGGTGTAACCAATGTGCACTTGACTGAAGAAGAGACACAGAGGCTTAGGGACTCAGCTAAGACAATCCTCCAAGTGCAGAATCAGTTGGTTATTTGA

Predicted protein sequences of Glyma01g41920

Limit To All Plant Sequences

>Glyma01g41920.1   sequence type=predicted peptide   gene model=Glyma01g41920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMHKSSSGSALGPGGLDLTQAFFKSIMNAAASSPTKRHNKISVVGAGNVGMAIAQTILTQDLTDELVLVDAIPDKLRGEMLDLQHAAAFLPRTRIQASTDYSVTLGSDLCIVTAGARQINGESRLNLLQRNVTLFQKIIPPLARYSPDTILLIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAFIVGEHGDSSVALWSSISVGGVPVLSFLEKQEIAYEKEMLENIHKEVIQGAYEVINLKGYTSWAIGYSVANLARTILRDQRRVHPVSVLAKGFYGIDDGEVFLSLPAQLGRGGVLGVTNVHLTEEETQRLRDSAKTILQVQNQLVI*

>Glyma01g41920.2   sequence type=predicted peptide   gene model=Glyma01g41920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMHKSSSGSALGPGGLDLTQAFFKSIMNAAASSPTKRHNKISVVGAGNVGMAIAQTILTQDLTDELVLVDAIPDKLRGEMLDLQHAAAFLPRTRIQASTDYSVTLGSDLCIVTAGARQINGESRLNLLQRNVTLFQKIIPPLARYSPDTILLIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAFIVGEHGDSSVALWSSISVGGVPVLSFLEKQEIAYEKEMLENIHKEVIQGAYEVINLKGYTSWAIGYSVANLARTILRDQRRVHPVSVLAKGFYGIDDGEVFLSLPAQLGRGGVLGVTNVHLTEEETQRLRDSAKTILQVQNQLVI*

>Glyma01g41920.3   sequence type=predicted peptide   gene model=Glyma01g41920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMHKSSSGSALGPGGLDLTQAFFKSIMNAAASSPTKRHNKISVVGAGNVGMAIAQTILTQDLTDELVLVDAIPDKLRGEMLDLQHAAAFLPRTRIQASTDYSVTLGSDLCIVTAGARQINGESRLNLLQRNVTLFQKIIPPLARYSPDTILLIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAFIVGEHGDSSVALWSSISVGGVPVLSFLEKQEIAYEKEMLENIHKEVIQGAYEVINLKGYTSWAIGYSVANLARTILRDQRRVHPVSVLAKGFYGIDDGEVFLSLPAQLGRGGVLGVTNVHLTEEETQRLRDSAKTILQVQNQLVI*

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