Glyma01g41880 - SoyBase

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Report for Sequence Feature Glyma01g41880

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53258993
stop:	53262935
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g41880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47510	AT	Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein \| chr5:19275048-19276999 FORWARD LENGTH=376	SoyBase	E_val: 3.00E-137	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG1471	KOG	Phosphatidylinositol transfer protein SEC14 and related proteins	JGI		ISS
PTHR23324	Panther	SEC14 RELATED PROTEIN	JGI		ISS
PTHR23324:SF5	Panther	SEC14 CYTOSOLIC FACTOR-RELATED	JGI		ISS
PF00650	PFAM	CRAL/TRIO domain	JGI		ISS
PF03765	PFAM	CRAL/TRIO, N-terminus	JGI		ISS
UniRef100_G7JW23	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sec14 cytosolic factor n=1 Tax=Medicago truncatula RepID=G7JW23_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J9W5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9W5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g41880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41880 not represented in the dataset	Glyma01g41880 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g41880

Paralog	Evidence	Comments
Glyma11g03491	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g41880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g209900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g41880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g41880

Limit To All Plant Sequences

>Glyma01g41880.2   sequence type=transcript   gene model=Glyma01g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGAAAATTCTACTGTTAAAAAATGGCCATCAATTATGATTTTCATTTGTGAGAGTTAACAAATGGCGGAGCCAGGAGGCAGGGACGTGATTATAGGAAGAGGTGATGGAGAAGAAGAGTCATGTTCTGGTTTTCAGGGATTGAGGTTTGATATTGGTGGTGGTAGTAGTAGTAGTGGTAAAAGTAGAACCAAAAGTTTTCATCCTCCTATTGAAACGCACTGGGATCTGAATTCAGCAGCAGGGAAAAAGACTTCGTCCCCTATCAAATCATTATTGTCTTACCCGCTCATGAAATTTAGGAAGACTAAAAGCCTTATAATGATTCTAGAAGGAGCTCGTGATCCTAAGGATAAACAAATTGTTGAGTCTTTTCGCCAAATGCTTTTACGAGAAGGTCTCTTGCCACCCAAACACGATGATTATCATACTCTTCTAAGGTTTCTGCGCATGAGGGATTTCGACATGTTAAAATCCAAAGAGATGTTTCAAAACTATCTCAAATGGCGCAAGGATTTTCGAGTGGACGTGCTTTCAAAGGAATTCAATTTCACGGAATACGATGAAGTGAAGAAATGCTATCCTCATGGATACCACGGAGTTGATAGATACGGCAGACCCGTGTATATTGAGAGAATTGGGATGGTAGACCTTAACAAACTGGGGCAAGTAACCACATTTGAAAGGTTTATCAAACATCATGTGTCAGAGCAAGAAAAAACTCTCAAAGTAAGATTCCCTGCATGTTCACTAGCTGCTAAAAGGCACATAGCATCCACTACAAGTATCTTGGATGTCAACGGAGTAGGAATATCTAATTTCTCAAAGCCTGCAAGATACCTCTTTATGGAAATTCAGAAAATCGATAGCTGTTACTATCCTGAGACTCTAAATCAGCTCTTTATTATTAATGCCGGATCTGGGTTTAGGATGCTGTGGAAAGCAGTAAAGACATTCCTAGATGTACGCACAGTGGCAAAAATTCATGTGTTAGGTTTCAATTATCTCAGTGTCCTGCTTGAGGCTATTGATTCAAGTAATTTGCCAACTTTTCTGGGTGGTAATTGCACATGTTCTGATTATGGAGGTTGTCTGATGAGTGATCGAGGGCCCTGGAAAAATCCAGAAGTGTTAGAAATGATTCAGGTTGTTAATTTGAGAGAAGAGATTGATGGTAAAAGCGAAGATGGTGATGTGGATATAGAAGATTCCTCGATGCCCAAAAAGGTTGATATGCAAAACAAAGATGGCAATTCTCTCAGTCTACTTGAGGAAGCAGCATGTGCGGGATCTGACTCGGCATGTTCTTGTAGATTAGCATTGCAAAAAATTGATTGCCTTGAAGCTAGTCTTGGAGACATCAAGAATAAAATCAAGACACTGGAAGATGTACTTCAGGACACCAAGATGGCCTTGATAGAACATGCACAACATGAGGAACGACCAAAAATGTAAAAGTGGCTACCGTTAACACTGTTGCAGTGAGTTAATTGATTTTTTCCCCTCAATTTCACTTGTATATTATTAGATTAAAGTTCAGCAGACTCTGCAATATTAATATCCTAACACGGTTGTTGTACAAAACTCTACCAAAGAATTGTTGTCGTGCAAAAAGAAGAAATAAAATAAATTTAAATGCAGGAATATATTTCTTGGTGACAAACACGAATACAGTACGATTGAGG

>Glyma01g41880.3   sequence type=transcript   gene model=Glyma01g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGAAAATTCTACTGTTAAAAAATGGCCATCAATTATGATTTTCATTTGTGAGAGTTTAATTTGAAGGCATGCAAGGTGTCTATATTGAATAGATTTGTATATATGAATGCACGTTTTCAGTTAACAAATGGCGGAGCCAGGAGGCAGGGACGTGATTATAGGAAGAGGTGATGGAGAAGAAGAGTCATGTTCTGGTTTTCAGGGATTGAGGTTTGATATTGGTGGTGGTAGTAGTAGTAGTGGTAAAAGTAGAACCAAAAGTTTTCATCCTCCTATTGAAACGCACTGGGATCTGAATTCAGCAGCAGGGAAAAAGACTTCGTCCCCTATCAAATCATTATTGTCTTACCCGCTCATGAAATTTAGGAAGACTAAAAGCCTTATAATGATTCTAGAAGGAGCTCGTGATCCTAAGGATAAACAAATTGTTGAGTCTTTTCGCCAAATGCTTTTACGAGAAGGTCTCTTGCCACCCAAACACGATGATTATCATACTCTTCTAAGGTTTCTGCGCATGAGGGATTTCGACATGTTAAAATCCAAAGAGATGTTTCAAAACTATCTCAAATGGCGCAAGGATTTTCGAGTGGACGTGCTTTCAAAGGAATTCAATTTCACGGAATACGATGAAGTGAAGAAATGCTATCCTCATGGATACCACGGAGTTGATAGATACGGCAGACCCGTGTATATTGAGAGAATTGGGATGGTAGACCTTAACAAACTGGGGCAAGTAACCACATTTGAAAGGTTTATCAAACATCATGTGTCAGAGCAAGAAAAAACTCTCAAAGTAAGATTCCCTGCATGTTCACTAGCTGCTAAAAGGCACATAGCATCCACTACAAGTATCTTGGATGTCAACGGAGTAGGAATATCTAATTTCTCAAAGCCTGCAAGATACCTCTTTATGGAAATTCAGAAAATCGATAGCTGTTACTATCCTGAGACTCTAAATCAGCTCTTTATTATTAATGCCGGATCTGGGTTTAGGATGCTGTGGAAAGCAGTAAAGACATTCCTAGATGTACGCACAGTGGCAAAAATTCATGTGTTAGGTTTCAATTATCTCAGTGTCCTGCTTGAGGCTATTGATTCAAGTAATTTGCCAACTTTTCTGGGTGGTAATTGCACATGTTCTGATTATGGAGGTTGTCTGATGAGTGATCGAGGGCCCTGGAAAAATCCAGAAGTGTTAGAAATGATTCAGGTTGTTAATTTGAGAGAAGAGATTGATGGTAAAAGCGAAGATGGTGATGTGGATATAGAAGATTCCTCGATGCCCAAAAAGGTTGATATGCAAAACAAAGATGGCAATTCTCTCAGTCTACTTGAGGAAGCAGCATGTGCGGGATCTGACTCGGCATGTTCTTGTAGATTAGCATTGCAAAAAATTGATTGCCTTGAAGCTAGTCTTGGAGACATCAAGAATAAAATCAAGACACTGGAAGATGTACTTCAGGACACCAAGATGGCCTTGATAGAACATGCACAACATGAGGAACGACCAAAAATGTAAAAGTGGCTACCGTTAACACTGTTGCAGTGAGTTAATTGATTTTTTCCCCTCAATTTCACTTGTATATTATTAGATTAAAGTTCAGCAGACTCTGCAATATTAATATCCTAACACGGTTGTTGTACAAAACTCTACCAAAGAATTGTTGTCGTGCAAAAAGAAGAAATAAAATAAATTTAAATGCAGGAATATATTTCTTGGTGACAAACACGAATACAGTACGATTGAGG

Coding sequences of Glyma01g41880

Limit To All Plant Sequences

>Glyma01g41880.1   sequence type=CDS   gene model=Glyma01g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGCCAGGAGGCAGGGACGTGATTATAGGAAGAGGTGATGGAGAAGAAGAGTCATGTTCTGGTTTTCAGGGATTGAGGTTTGATATTGGTGGTGGTAGTAGTAGTAGTGGTAAAAGTAGAACCAAAAGTTTTCATCCTCCTATTGAAACGCACTGGGATCTGAATTCAGCAGCAGGGAAAAAGACTTCGTCCCCTATCAAATCATTATTGTCTTACCCGCTCATGAAATTTAGGAAGACTAAAAGCCTTATAATGATTCTAGAAGGAGCTCGTGATCCTAAGGATAAACAAATTGTTGAGTCTTTTCGCCAAATGCTTTTACGAGAAGGTCTCTTGCCACCCAAACACGATGATTATCATACTCTTCTAAGGTTTCTGCGCATGAGGGATTTCGACATGTTAAAATCCAAAGAGATGTTTCAAAACTATCTCAAATGGCGCAAGGATTTTCGAGTGGACGTGCTTTCAAAGGAATTCAATTTCACGGAATACGATGAAGTGAAGAAATGCTATCCTCATGGATACCACGGAGTTGATAGATACGGCAGACCCGTGTATATTGAGAGAATTGGGATGGTAGACCTTAACAAACTGGGGCAAGTAACCACATTTGAAAGGTTTATCAAACATCATGTGTCAGAGCAAGAAAAAACTCTCAAAGTAAGATTCCCTGCATGTTCACTAGCTGCTAAAAGGCACATAGCATCCACTACAAGTATCTTGGATGTCAACGGAGTAGGAATATCTAATTTCTCAAAGCCTGCAAGATACCTCTTTATGGAAATTCAGAAAATCGATAGCTGTTACTATCCTGAGACTCTAAATCAGCTCTTTATTATTAATGCCGGATCTGGGTTTAGGATGCTGTGGAAAGCAGTAAAGACATTCCTAGATGTACGCACAGTGGCAAAAATTCATGTGTTAGGTTTCAATTATCTCAGTGTCCTGCTTGAGGCTATTGATTCAAGTAATTTGCCAACTTTTCTGGGTGGTAATTGCACATGTTCTGATTATGGAGGTTGTCTGATGAGTGATCGAGGGCCCTGGAAAAATCCAGAAGTGTTAGAAATGATTCAGGTTGTTAATTTGAGAGAAGAGATTGATGGTAAAAGCGAAGATGGTGATGTGGATATAGAAGATTCCTCGATGCCCAAAAAGGTTGATATGCAAAACAAAGATGGCAATTCTCTCAGTCTACTTGAGGAAGCAGCATGTGCGGGATCTGACTCGGCATGTTCTTGTAGATTAGCATTGCAAAAAATTGATTGCCTTGAAGCTAGTCTTGGAGACATCAAGAATAAAATCAAGACACTGGAAGATGTACTTCAGGACACCAAGATGGCCTTGATAGAACATGCACAACATGAGGAACGACCAAAAATGTAA

>Glyma01g41880.2   sequence type=CDS   gene model=Glyma01g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGCCAGGAGGCAGGGACGTGATTATAGGAAGAGGTGATGGAGAAGAAGAGTCATGTTCTGGTTTTCAGGGATTGAGGTTTGATATTGGTGGTGGTAGTAGTAGTAGTGGTAAAAGTAGAACCAAAAGTTTTCATCCTCCTATTGAAACGCACTGGGATCTGAATTCAGCAGCAGGGAAAAAGACTTCGTCCCCTATCAAATCATTATTGTCTTACCCGCTCATGAAATTTAGGAAGACTAAAAGCCTTATAATGATTCTAGAAGGAGCTCGTGATCCTAAGGATAAACAAATTGTTGAGTCTTTTCGCCAAATGCTTTTACGAGAAGGTCTCTTGCCACCCAAACACGATGATTATCATACTCTTCTAAGGTTTCTGCGCATGAGGGATTTCGACATGTTAAAATCCAAAGAGATGTTTCAAAACTATCTCAAATGGCGCAAGGATTTTCGAGTGGACGTGCTTTCAAAGGAATTCAATTTCACGGAATACGATGAAGTGAAGAAATGCTATCCTCATGGATACCACGGAGTTGATAGATACGGCAGACCCGTGTATATTGAGAGAATTGGGATGGTAGACCTTAACAAACTGGGGCAAGTAACCACATTTGAAAGGTTTATCAAACATCATGTGTCAGAGCAAGAAAAAACTCTCAAAGTAAGATTCCCTGCATGTTCACTAGCTGCTAAAAGGCACATAGCATCCACTACAAGTATCTTGGATGTCAACGGAGTAGGAATATCTAATTTCTCAAAGCCTGCAAGATACCTCTTTATGGAAATTCAGAAAATCGATAGCTGTTACTATCCTGAGACTCTAAATCAGCTCTTTATTATTAATGCCGGATCTGGGTTTAGGATGCTGTGGAAAGCAGTAAAGACATTCCTAGATGTACGCACAGTGGCAAAAATTCATGTGTTAGGTTTCAATTATCTCAGTGTCCTGCTTGAGGCTATTGATTCAAGTAATTTGCCAACTTTTCTGGGTGGTAATTGCACATGTTCTGATTATGGAGGTTGTCTGATGAGTGATCGAGGGCCCTGGAAAAATCCAGAAGTGTTAGAAATGATTCAGGTTGTTAATTTGAGAGAAGAGATTGATGGTAAAAGCGAAGATGGTGATGTGGATATAGAAGATTCCTCGATGCCCAAAAAGGTTGATATGCAAAACAAAGATGGCAATTCTCTCAGTCTACTTGAGGAAGCAGCATGTGCGGGATCTGACTCGGCATGTTCTTGTAGATTAGCATTGCAAAAAATTGATTGCCTTGAAGCTAGTCTTGGAGACATCAAGAATAAAATCAAGACACTGGAAGATGTACTTCAGGACACCAAGATGGCCTTGATAGAACATGCACAACATGAGGAACGACCAAAAATGTAA

>Glyma01g41880.3   sequence type=CDS   gene model=Glyma01g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGCCAGGAGGCAGGGACGTGATTATAGGAAGAGGTGATGGAGAAGAAGAGTCATGTTCTGGTTTTCAGGGATTGAGGTTTGATATTGGTGGTGGTAGTAGTAGTAGTGGTAAAAGTAGAACCAAAAGTTTTCATCCTCCTATTGAAACGCACTGGGATCTGAATTCAGCAGCAGGGAAAAAGACTTCGTCCCCTATCAAATCATTATTGTCTTACCCGCTCATGAAATTTAGGAAGACTAAAAGCCTTATAATGATTCTAGAAGGAGCTCGTGATCCTAAGGATAAACAAATTGTTGAGTCTTTTCGCCAAATGCTTTTACGAGAAGGTCTCTTGCCACCCAAACACGATGATTATCATACTCTTCTAAGGTTTCTGCGCATGAGGGATTTCGACATGTTAAAATCCAAAGAGATGTTTCAAAACTATCTCAAATGGCGCAAGGATTTTCGAGTGGACGTGCTTTCAAAGGAATTCAATTTCACGGAATACGATGAAGTGAAGAAATGCTATCCTCATGGATACCACGGAGTTGATAGATACGGCAGACCCGTGTATATTGAGAGAATTGGGATGGTAGACCTTAACAAACTGGGGCAAGTAACCACATTTGAAAGGTTTATCAAACATCATGTGTCAGAGCAAGAAAAAACTCTCAAAGTAAGATTCCCTGCATGTTCACTAGCTGCTAAAAGGCACATAGCATCCACTACAAGTATCTTGGATGTCAACGGAGTAGGAATATCTAATTTCTCAAAGCCTGCAAGATACCTCTTTATGGAAATTCAGAAAATCGATAGCTGTTACTATCCTGAGACTCTAAATCAGCTCTTTATTATTAATGCCGGATCTGGGTTTAGGATGCTGTGGAAAGCAGTAAAGACATTCCTAGATGTACGCACAGTGGCAAAAATTCATGTGTTAGGTTTCAATTATCTCAGTGTCCTGCTTGAGGCTATTGATTCAAGTAATTTGCCAACTTTTCTGGGTGGTAATTGCACATGTTCTGATTATGGAGGTTGTCTGATGAGTGATCGAGGGCCCTGGAAAAATCCAGAAGTGTTAGAAATGATTCAGGTTGTTAATTTGAGAGAAGAGATTGATGGTAAAAGCGAAGATGGTGATGTGGATATAGAAGATTCCTCGATGCCCAAAAAGGTTGATATGCAAAACAAAGATGGCAATTCTCTCAGTCTACTTGAGGAAGCAGCATGTGCGGGATCTGACTCGGCATGTTCTTGTAGATTAGCATTGCAAAAAATTGATTGCCTTGAAGCTAGTCTTGGAGACATCAAGAATAAAATCAAGACACTGGAAGATGTACTTCAGGACACCAAGATGGCCTTGATAGAACATGCACAACATGAGGAACGACCAAAAATGTAA

Predicted protein sequences of Glyma01g41880

Limit To All Plant Sequences

>Glyma01g41880.1   sequence type=predicted peptide   gene model=Glyma01g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEPGGRDVIIGRGDGEEESCSGFQGLRFDIGGGSSSSGKSRTKSFHPPIETHWDLNSAAGKKTSSPIKSLLSYPLMKFRKTKSLIMILEGARDPKDKQIVESFRQMLLREGLLPPKHDDYHTLLRFLRMRDFDMLKSKEMFQNYLKWRKDFRVDVLSKEFNFTEYDEVKKCYPHGYHGVDRYGRPVYIERIGMVDLNKLGQVTTFERFIKHHVSEQEKTLKVRFPACSLAAKRHIASTTSILDVNGVGISNFSKPARYLFMEIQKIDSCYYPETLNQLFIINAGSGFRMLWKAVKTFLDVRTVAKIHVLGFNYLSVLLEAIDSSNLPTFLGGNCTCSDYGGCLMSDRGPWKNPEVLEMIQVVNLREEIDGKSEDGDVDIEDSSMPKKVDMQNKDGNSLSLLEEAACAGSDSACSCRLALQKIDCLEASLGDIKNKIKTLEDVLQDTKMALIEHAQHEERPKM*

>Glyma01g41880.2   sequence type=predicted peptide   gene model=Glyma01g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEPGGRDVIIGRGDGEEESCSGFQGLRFDIGGGSSSSGKSRTKSFHPPIETHWDLNSAAGKKTSSPIKSLLSYPLMKFRKTKSLIMILEGARDPKDKQIVESFRQMLLREGLLPPKHDDYHTLLRFLRMRDFDMLKSKEMFQNYLKWRKDFRVDVLSKEFNFTEYDEVKKCYPHGYHGVDRYGRPVYIERIGMVDLNKLGQVTTFERFIKHHVSEQEKTLKVRFPACSLAAKRHIASTTSILDVNGVGISNFSKPARYLFMEIQKIDSCYYPETLNQLFIINAGSGFRMLWKAVKTFLDVRTVAKIHVLGFNYLSVLLEAIDSSNLPTFLGGNCTCSDYGGCLMSDRGPWKNPEVLEMIQVVNLREEIDGKSEDGDVDIEDSSMPKKVDMQNKDGNSLSLLEEAACAGSDSACSCRLALQKIDCLEASLGDIKNKIKTLEDVLQDTKMALIEHAQHEERPKM*

>Glyma01g41880.3   sequence type=predicted peptide   gene model=Glyma01g41880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEPGGRDVIIGRGDGEEESCSGFQGLRFDIGGGSSSSGKSRTKSFHPPIETHWDLNSAAGKKTSSPIKSLLSYPLMKFRKTKSLIMILEGARDPKDKQIVESFRQMLLREGLLPPKHDDYHTLLRFLRMRDFDMLKSKEMFQNYLKWRKDFRVDVLSKEFNFTEYDEVKKCYPHGYHGVDRYGRPVYIERIGMVDLNKLGQVTTFERFIKHHVSEQEKTLKVRFPACSLAAKRHIASTTSILDVNGVGISNFSKPARYLFMEIQKIDSCYYPETLNQLFIINAGSGFRMLWKAVKTFLDVRTVAKIHVLGFNYLSVLLEAIDSSNLPTFLGGNCTCSDYGGCLMSDRGPWKNPEVLEMIQVVNLREEIDGKSEDGDVDIEDSSMPKKVDMQNKDGNSLSLLEEAACAGSDSACSCRLALQKIDCLEASLGDIKNKIKTLEDVLQDTKMALIEHAQHEERPKM*

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