Glyma01g41850 - SoyBase

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Report for Sequence Feature Glyma01g41850

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53248013
stop:	53257118
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g41850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G35720	AT	Annotation by Michelle Graham. TAIR10: DNAJ heat shock N-terminal domain-containing protein \| chr2:15016883-15019866 FORWARD LENGTH=538	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0055122	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to very low light intensity stimulus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
KOG0718	KOG	Molecular chaperone (DnaJ superfamily)	JGI		ISS
PTHR24078	Panther	DNAJ HOMOLOG SUBFAMILY C MEMBER	JGI		ISS
PTHR24078:SF15	Panther	DNAJ HOMOLOG SUBFAMILY C MEMBER 18	JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
PF11875	PFAM	Domain of unknown function (DUF3395)	JGI		ISS
UniRef100_G7JW29	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chaperone protein dnaJ n=1 Tax=Medicago truncatula RepID=G7JW29_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J9W3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9W3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g41850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g41850

Paralog	Evidence	Comments
Glyma11g03520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g41850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g209800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g41850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g41850

Limit To All Plant Sequences

>Glyma01g41850.2   sequence type=transcript   gene model=Glyma01g41850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAACTCGTGTAAAAAACTCCACAAATAAACTTTTATAGGAGATGGCCTAATTATTTTCCACTCAATTTCTTTTCTAACACGTTGACGTCGGCCAAGGAAGAGAGTAAGCGAAGACCCCTTAAACGTTAAACCCTTTACTTTCCAAACACTGCAAAACCCTAACCTCTGGGGGTTCCAAAATTTCCACGACGAGGCACCGCAATGGACGAACCGAACGAAGCACAAGACAACAGAGAACTCTACGCGCTCTTGAATTTGTCTCCAGAAGCTTCCGATGAAGAAATTCGCAGAGCGTATCGTCAATGGGCGCAAGCCTATCATCCCGATAAATACCAAGCTCCTCACATGAAGGATATTGCTACGGAGAACTTTCAGCGAATATGCGAAGCGTATGAGATTCTTTCAGATCCAAATAAAAGGCAAATATATGATATCTACGGCATGGAGGGGTTGACCTCTGGTTTGGAACTTGGTCCAAAGCTTAATGGAGCTGAAGAGATCAAGGCAGAACTCGAGAGATTGAAGAGGATGAAGGAACGCGAGAAAATGGCGGCGCATTTTCAACCCTCCGGTACAATTGTGGCCAATATGTCTTTGCCACGCTATCTAGACGGAAATGGCATGCTCAGAGGAATGGCTATGACAAGTGAAATCCAGTCTCAGTTATCAAAGCGTAATGCTGTTACGATTGGTGGTAATTTAGCAGTGAATGGAGAGGAAGGCGGTGGAGCTGCTACTGCTGTATTTAGGCATCATCTTTCAGAAGTTTCGTCAGTAGAGGTTGTGGCCTCAGCTGGTCTGCGTGCACTAATTGGGGTGCAAACAACTCGTAATCTATCATCACACTCAGCTGCAACAATGGGCATAGCACTGTCTCTGAAAGACGGTTCATTGAATCTTTCAAATTTATGGACCCGCCAACTGTCAGAAACAGCAAGTGGACATATAGAGCTTGCTTTGGGGCCACATTCATCTGTAACTGTTGGGTGGCAAAAGAAAGATCAGAGAAGGTCTGCCTCTGGAGAAGTGAAGTTTGGCACAGGTTCTTTTGAGACATCAGTTCATTATACTCATCGTTTTTCTCCTAAATCTCTTGGCTGCATTGTGGGAAGAGTTGGGAGTTCTTCCCTTGAGGTTGAAGTCGGTGGTGGGAGGAAGCTATCCAAATTCAGCTCGGTACGCTGGTTGTATATAATAGGAATTCAGGGTATTTCCTGGAAATTTGAGCTGTATCGTGGGGGTCAGAAGTTAATTATTCCTATTTTGCTGACAAGACATCTGAACCCTGTGTTTGCTACTGGAGCATTTGTCGTTCCTGCATCTCTTTACTTTGTTCTAAAGAAACTTTTTATTAAACCTTATTACCTTAGAAGGAATAAACAGAAGGCTCTGGAGGAGAAGGAGAAAACTTCTGCTCAGGTTAAGGAAGCACGAGCTACAGCAGAGAAAGCTCAGAATTTACAACAAAATGTGGCTAATAGGAAAAGAAACAAGCAATTAGAAACAGGTGGACTGGTTATTATGAGAGCACTATATGGAAATCAGAGAATTTTGAACAACTTAAAGTCATCAAGTGAAACAAGTTTTGAATTAACTTCAGAAGTCATTGATGTTACAATACCTTTGAATTTTCTAGTTAATGATTCTGGCCAACTCAAGCTTCATGAAGGTGTAAAAAAATCAGGCATCATGGGTTTCTGTGATCCATGTCCAGGAAGTCCTAAAGACTTGTATGTAGAGTACGTCTATGCTGGCAATCAATACAGGGTATTACCAGTTGCTTGTTATGATTCAAAATTGTTATAATCCTCTCGCATCTGGTTTATCCAAGGGCTAATTAAAATGTTGAAGCAGGTTTGGGCTGGTGATTATGAAGAATTACAGATCCCTCAGGGCAGCCACAGGATATAAAGGATTATTATTAACACATCAATATATCATTGTAACCTCTTGCAGTTTTGCCTGATTTATATACGCTTGAGGTACTACTGCATTTTATCCTGTCAGATGGAATTAGAGGAGGTACCTTTTACGATTTTTGGGCCAGTGGTACCGTCACTTATTTTTTAAATCTTTTATTTTTCCCATAATTTATTACACCCCGAAAATGTATGAAATAAGGATATTTTAGGAGGCGGTTTTAGTATTTTGTCAAGTTGCGTCTCTCTCTCTAAACTATTAACTCTGCTGCTGGATCCCAATTTTGGTTAGTCATACTCCTTTTATTGTTGATTCGTTGCCCGTTCACATAAATTCTTTCTCGAGACAACAGCCAACAGCTGTTGGAGGTTTGATTTGATGTTTGTATTATCAAGTTTTCATTTGGGTTTGTACTTAATATATGATACACTATTTATGACAATAACATCGGTGAATCAAATTGAGCGCCGAAACATGTTTATGTTTACTTGTACCTGCGATTCTGCGAAGGTGCTGATTATCTTTCTGTAGAAC

Coding sequences of Glyma01g41850

Limit To All Plant Sequences

>Glyma01g41850.1   sequence type=CDS   gene model=Glyma01g41850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGAACCGAACGAAGCACAAGACAACAGAGAACTCTACGCGCTCTTGAATTTGTCTCCAGAAGCTTCCGATGAAGAAATTCGCAGAGCGTATCGTCAATGGGCGCAAGCCTATCATCCCGATAAATACCAAGCTCCTCACATGAAGGATATTGCTACGGAGAACTTTCAGCGAATATGCGAAGCGTATGAGATTCTTTCAGATCCAAATAAAAGGCAAATATATGATATCTACGGCATGGAGGGGTTGACCTCTGGTTTGGAACTTGGTCCAAAGCTTAATGGAGCTGAAGAGATCAAGGCAGAACTCGAGAGATTGAAGAGGATGAAGGAACGCGAGAAAATGGCGGCGCATTTTCAACCCTCCGGTACAATTGTGGCCAATATGTCTTTGCCACGCTATCTAGACGGAAATGGCATGCTCAGAGGAATGGCTATGACAAGTGAAATCCAGTCTCAGTTATCAAAGCGTAATGCTGTTACGATTGGTGGTAATTTAGCAGTGAATGGAGAGGAAGGCGGTGGAGCTGCTACTGCTGTATTTAGGCATCATCTTTCAGAAGTTTCGTCAGTAGAGGTTGTGGCCTCAGCTGGTCTGCGTGCACTAATTGGGGTGCAAACAACTCGTAATCTATCATCACACTCAGCTGCAACAATGGGCATAGCACTGTCTCTGAAAGACGGTTCATTGAATCTTTCAAATTTATGGACCCGCCAACTGTCAGAAACAGCAAGTGGACATATAGAGCTTGCTTTGGGGCCACATTCATCTGTAACTGTTGGGTGGCAAAAGAAAGATCAGAGAAGGTCTGCCTCTGGAGAAGTGAAGTTTGGCACAGGTTCTTTTGAGACATCAGTTCATTATACTCATCGTTTTTCTCCTAAATCTCTTGGCTGCATTGTGGGAAGAGTTGGGAGTTCTTCCCTTGAGGTTGAAGTCGGTGGTGGGAGGAAGCTATCCAAATTCAGCTCGGTACGCTGGTTGTATATAATAGGAATTCAGGGTATTTCCTGGAAATTTGAGCTGTATCGTGGGGGTCAGAAGTTAATTATTCCTATTTTGCTGACAAGACATCTGAACCCTGTGTTTGCTACTGGAGCATTTGTCGTTCCTGCATCTCTTTACTTTGTTCTAAAGAAACTTTTTATTAAACCTTATTACCTTAGAAGGAATAAACAGAAGGCTCTGGAGGAGAAGGAGAAAACTTCTGCTCAGGTTAAGGAAGCACGAGCTACAGCAGAGAAAGCTCAGAATTTACAACAAAATGTGGCTAATAGGAAAAGAAACAAGCAATTAGAAACAGGTGGACTGGTTATTATGAGAGCACTATATGGAAATCAGAGAATTTTGAACAACTTAAAGTCATCAAGTGAAACAAGTTTTGAATTAACTTCAGAAGTCATTGATGTTACAATACCTTTGAATTTTCTAGTTAATGATTCTGGCCAACTCAAGCTTCATGAAGGTGTAAAAAAATCAGGCATCATGGGTTTCTGTGATCCATGTCCAGGAAGTCCTAAAGACTTGTATGTAGAGTACGTCTATGCTGGCAATCAATACAGGGTTTGGGCTGGTGATTATGAAGAATTACAGATCCCTCAGGGCAGCCACAGGATATAA

>Glyma01g41850.2   sequence type=CDS   gene model=Glyma01g41850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGAACCGAACGAAGCACAAGACAACAGAGAACTCTACGCGCTCTTGAATTTGTCTCCAGAAGCTTCCGATGAAGAAATTCGCAGAGCGTATCGTCAATGGGCGCAAGCCTATCATCCCGATAAATACCAAGCTCCTCACATGAAGGATATTGCTACGGAGAACTTTCAGCGAATATGCGAAGCGTATGAGATTCTTTCAGATCCAAATAAAAGGCAAATATATGATATCTACGGCATGGAGGGGTTGACCTCTGGTTTGGAACTTGGTCCAAAGCTTAATGGAGCTGAAGAGATCAAGGCAGAACTCGAGAGATTGAAGAGGATGAAGGAACGCGAGAAAATGGCGGCGCATTTTCAACCCTCCGGTACAATTGTGGCCAATATGTCTTTGCCACGCTATCTAGACGGAAATGGCATGCTCAGAGGAATGGCTATGACAAGTGAAATCCAGTCTCAGTTATCAAAGCGTAATGCTGTTACGATTGGTGGTAATTTAGCAGTGAATGGAGAGGAAGGCGGTGGAGCTGCTACTGCTGTATTTAGGCATCATCTTTCAGAAGTTTCGTCAGTAGAGGTTGTGGCCTCAGCTGGTCTGCGTGCACTAATTGGGGTGCAAACAACTCGTAATCTATCATCACACTCAGCTGCAACAATGGGCATAGCACTGTCTCTGAAAGACGGTTCATTGAATCTTTCAAATTTATGGACCCGCCAACTGTCAGAAACAGCAAGTGGACATATAGAGCTTGCTTTGGGGCCACATTCATCTGTAACTGTTGGGTGGCAAAAGAAAGATCAGAGAAGGTCTGCCTCTGGAGAAGTGAAGTTTGGCACAGGTTCTTTTGAGACATCAGTTCATTATACTCATCGTTTTTCTCCTAAATCTCTTGGCTGCATTGTGGGAAGAGTTGGGAGTTCTTCCCTTGAGGTTGAAGTCGGTGGTGGGAGGAAGCTATCCAAATTCAGCTCGGTACGCTGGTTGTATATAATAGGAATTCAGGGTATTTCCTGGAAATTTGAGCTGTATCGTGGGGGTCAGAAGTTAATTATTCCTATTTTGCTGACAAGACATCTGAACCCTGTGTTTGCTACTGGAGCATTTGTCGTTCCTGCATCTCTTTACTTTGTTCTAAAGAAACTTTTTATTAAACCTTATTACCTTAGAAGGAATAAACAGAAGGCTCTGGAGGAGAAGGAGAAAACTTCTGCTCAGGTTAAGGAAGCACGAGCTACAGCAGAGAAAGCTCAGAATTTACAACAAAATGTGGCTAATAGGAAAAGAAACAAGCAATTAGAAACAGGTGGACTGGTTATTATGAGAGCACTATATGGAAATCAGAGAATTTTGAACAACTTAAAGTCATCAAGTGAAACAAGTTTTGAATTAACTTCAGAAGTCATTGATGTTACAATACCTTTGAATTTTCTAGTTAATGATTCTGGCCAACTCAAGCTTCATGAAGGTGTAAAAAAATCAGGCATCATGGGTTTCTGTGATCCATGTCCAGGAAGTCCTAAAGACTTGTATGTAGAGTACGTCTATGCTGGCAATCAATACAGGGTATTACCAGTTGCTTGTTATGATTCAAAATTGTTATAA

Predicted protein sequences of Glyma01g41850

Limit To All Plant Sequences

>Glyma01g41850.1   sequence type=predicted peptide   gene model=Glyma01g41850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEPNEAQDNRELYALLNLSPEASDEEIRRAYRQWAQAYHPDKYQAPHMKDIATENFQRICEAYEILSDPNKRQIYDIYGMEGLTSGLELGPKLNGAEEIKAELERLKRMKEREKMAAHFQPSGTIVANMSLPRYLDGNGMLRGMAMTSEIQSQLSKRNAVTIGGNLAVNGEEGGGAATAVFRHHLSEVSSVEVVASAGLRALIGVQTTRNLSSHSAATMGIALSLKDGSLNLSNLWTRQLSETASGHIELALGPHSSVTVGWQKKDQRRSASGEVKFGTGSFETSVHYTHRFSPKSLGCIVGRVGSSSLEVEVGGGRKLSKFSSVRWLYIIGIQGISWKFELYRGGQKLIIPILLTRHLNPVFATGAFVVPASLYFVLKKLFIKPYYLRRNKQKALEEKEKTSAQVKEARATAEKAQNLQQNVANRKRNKQLETGGLVIMRALYGNQRILNNLKSSSETSFELTSEVIDVTIPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGSPKDLYVEYVYAGNQYRVWAGDYEELQIPQGSHRI*

>Glyma01g41850.2   sequence type=predicted peptide   gene model=Glyma01g41850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDEPNEAQDNRELYALLNLSPEASDEEIRRAYRQWAQAYHPDKYQAPHMKDIATENFQRICEAYEILSDPNKRQIYDIYGMEGLTSGLELGPKLNGAEEIKAELERLKRMKEREKMAAHFQPSGTIVANMSLPRYLDGNGMLRGMAMTSEIQSQLSKRNAVTIGGNLAVNGEEGGGAATAVFRHHLSEVSSVEVVASAGLRALIGVQTTRNLSSHSAATMGIALSLKDGSLNLSNLWTRQLSETASGHIELALGPHSSVTVGWQKKDQRRSASGEVKFGTGSFETSVHYTHRFSPKSLGCIVGRVGSSSLEVEVGGGRKLSKFSSVRWLYIIGIQGISWKFELYRGGQKLIIPILLTRHLNPVFATGAFVVPASLYFVLKKLFIKPYYLRRNKQKALEEKEKTSAQVKEARATAEKAQNLQQNVANRKRNKQLETGGLVIMRALYGNQRILNNLKSSSETSFELTSEVIDVTIPLNFLVNDSGQLKLHEGVKKSGIMGFCDPCPGSPKDLYVEYVYAGNQYRVLPVACYDSKLL*

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