SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G16640 | AT | Annotation by Michelle Graham. TAIR10: Matrixin family protein | chr4:9367396-9368490 REVERSE LENGTH=364 | SoyBase | E_val: 3.00E-120 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0031012 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular matrix | SoyBase | N/A | ISS |
| GO:0031225 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane | SoyBase | N/A | ISS |
| GO:0004222 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity | SoyBase | N/A | ISS |
| GO:0008237 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR10201 | Panther | MATRIX METALLOPROTEINASE | JGI | ISS | |
| PTHR10201:SF15 | Panther | MATRIX METALLOPROTEINASE-RELATED | JGI | ISS | |
| PF00413 | PFAM | Matrixin | JGI | ISS | |
| PF01471 | PFAM | Putative peptidoglycan binding domain | JGI | ISS | |
| UniRef100_G7JW40 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Matrix metalloproteinase-28 n=1 Tax=Medicago truncatula RepID=G7JW40_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023379EB | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023379EB related cluster n=1 Tax=unknown RepID=UPI00023379EB | SoyBase | E_val: 0 | ISS |
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Glyma01g41750 not represented in the dataset |
Glyma01g41750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g03630 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g208800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g41750.2 sequence type=CDS gene model=Glyma01g41750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTCCGTTTTTCAGTTACTTTAACTTGTTCTTCTTCTGCATGACCCTCTTCCTTTGCCGCCCTTGCTTTCCCGCCAGGATCGTACCCGAGTCCGTAACCGTGGTAACCACCGAAACCGAAAAAACCGTAACGCATAACGCCATGTGGCACGACTTCTCCAAGTTCCTACACGCCGGGCGAGGCAGCCACGTCAGCGGCATGTCGGAACTGAAAAAGTACTTCCACCGCTTCGGCTACCTCTCCCTCCCCGAAACGACGCCGAATTTCACAGACACCTTCGATTCTCAATTCGAGTCCGCGCTCGTCCGTTACCAGAAGCGCCTCGGCTTGCCGGTCACCGGAAAACTCGACTCCGGCACGATTTCCGCGATCGTGGCGCCGAGGTGCGGCGTCTCCGACGCCGCACCTCACGGATTTCGCGCCACGCGTCGCTACGCTTACTTCAACGGGAAGCCGCGATGGACGCGCGGAACTCCGATGACTCTCACGTATGCTTTTTCTCCGTACAACATGATCGACCGCGTGAGCGTGCCGGAAATCCGAGCGGTGTTCGAGCGTGCGTTCGCGCGGTGGGCGTCGGTGATTCCGGTGAGTTTCCAGGAGACGCCGGAGTACGATAGGGCTGACATCACGATCGGGTTTTACCTCGGGGATCACGGCGACGGAGAGCCGTTCGATGGAGTTTTAGGCGTTTTGGGGCACGCGTTCTCCCCTCAGAACGGGAGATTCCATTTGGATGCGGCGGAAACGTGGTCCGTTGATTTCGAGCGCGAAGCGTCGAGGGTGGCCGTTGATTTGGAATCGGTTGCCACGCACGAGATAGGTCACGTGCTTGGGTTGGGTCACTCTTCGGTGAAGGAAGCGGTCATGTACCCGAGCCTCAGCCCCAGGAGAAAGAAGGTTGACTTGAAGATTGATGACGTGGCAGGAGTCCAAGCTCTTTATGGCTCCAACCCAAACTTTACTTTTAGTTCTTTGTTGCAGTCTCAGAATTCATTAAACGCTGCTGTTGGGTTGGAAACCGGTTTCTATAAATGGACCCTCTCTTTGCCTCTTCTTGCCTTGTTCGCATTATTTTTATCTGCTTGA
>Glyma01g41750.2 sequence type=predicted peptide gene model=Glyma01g41750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFPFFSYFNLFFFCMTLFLCRPCFPARIVPESVTVVTTETEKTVTHNAMWHDFSKFLHAGRGSHVSGMSELKKYFHRFGYLSLPETTPNFTDTFDSQFESALVRYQKRLGLPVTGKLDSGTISAIVAPRCGVSDAAPHGFRATRRYAYFNGKPRWTRGTPMTLTYAFSPYNMIDRVSVPEIRAVFERAFARWASVIPVSFQETPEYDRADITIGFYLGDHGDGEPFDGVLGVLGHAFSPQNGRFHLDAAETWSVDFEREASRVAVDLESVATHEIGHVLGLGHSSVKEAVMYPSLSPRRKKVDLKIDDVAGVQALYGSNPNFTFSSLLQSQNSLNAAVGLETGFYKWTLSLPLLALFALFLSA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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