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Report for Sequence Feature Glyma01g41700

Feature Type:gene_model
Chromosome:Gm01
Start:53131468
stop:53132003
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g41700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G21530AT Annotation by Michelle Graham. TAIR10: AMP-dependent synthetase and ligase family protein | chr1:7545151-7546936 REVERSE LENGTH=547 SoyBaseE_val: 6.00E-17ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
PTHR24095Panther FAMILY NOT NAMED JGI ISS
PTHR24095:SF26Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_B9S6X4UniRef Annotation by Michelle Graham. Most informative UniRef hit: AMP dependent ligase, putative n=1 Tax=Ricinus communis RepID=B9S6X4_RICCO SoyBaseE_val: 5.00E-20ISS
UniRef100_I1MBP5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MBP5_SOYBN SoyBaseE_val: 9.00E-41ISS

Expression Patterns of Glyma01g41700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41700 not represented in the dataset
Glyma01g41700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g41700 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g208500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g41700
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g41700
>Glyma01g41700.1   sequence type=CDS   gene model=Glyma01g41700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACGAGCTCCACTTCGCCGGCGCAATTCTCAACAACATCAACACCCGCCTCTACGCCCGCACCGTCTCCGTCATCCTCCGTCATGTGAAATCCGCGCTAGTCTTCGTCGACTGCGCCTCATGCCACCTCGTCCTCGAAGCCCTATCTCTCTTCCCTGAAAACCAAAATCAACACCCAACCCTAATTCTCATCACAGACAAAATCGTGGAGAAAGAGAAAGCCTTACCCGCCGTTGATAATTTCCTCGACATCGACGAGGGGCTTGAGTGA
Predicted protein sequences of Glyma01g41700
>Glyma01g41700.1   sequence type=predicted peptide   gene model=Glyma01g41700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYELHFAGAILNNINTRLYARTVSVILRHVKSALVFVDCASCHLVLEALSLFPENQNQHPTLILITDKIVEKEKALPAVDNFLDIDEGLE*






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