SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G47450 | AT | Annotation by Michelle Graham. TAIR10: tonoplast intrinsic protein 2;3 | chr5:19248509-19249466 REVERSE LENGTH=250 | SoyBase | E_val: 3.00E-130 | ISS |
| GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transport | SoyBase | N/A | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0009705 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0042807 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: central vacuole | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0015200 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methylammonium transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015250 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: water channel activity | SoyBase | N/A | ISS |
| KOG0223 | KOG | Aquaporin (major intrinsic protein family) | JGI | ISS | |
| PTHR19139 | Panther | AQUAPORIN TRANSPORTER | JGI | ISS | |
| PTHR19139:SF30 | Panther | AQUAPORIN-7 | JGI | ISS | |
| PF00230 | PFAM | Major intrinsic protein | JGI | ISS | |
| UniRef100_G2XKY2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tonoplast intrinsic protein n=1 Tax=Glycine soja RepID=G2XKY2_GLYSO | SoyBase | E_val: 2.00E-153 | ISS |
| UniRef100_I1J9U6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9U6_SOYBN | SoyBase | E_val: 5.00E-170 | ISS |
|
Glyma01g41670 not represented in the dataset |
Glyma01g41670 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g03690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g208200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g41670.1 sequence type=CDS gene model=Glyma01g41670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAAGATAGCTCTTGGTACTTTGGATGACTCTTTTAGCGCTGCCTCTCTTAAGGCTTATTTCGCAGAGTTCCACGCAACTCTGATTTTCGTGTTCGCTGGTGTTGGATCAGCCATCGCTTACAACGAGCTTACAAAAGATGCAGCCTTGGATCCAACGGGGCTGGTGGCAGTAGCTGTGGCACATGCATTTGCACTGTTTGTAGGTGTCTCCGTCGCCGCCAACATCTCAGGTGGCCATTTGAACCCAGCTGTCACTTTTGGATTGGCCATTGGAGGCAACATCACTCTCATCACTGGTTTCTTATACTGGATTGCCCAATTGTTGGGTTCTATAGTCGCATGCCTCCTCCTCAATTTGATCACCGCTAAGAGCATTCCAAGCCACTCGCCGGCTAATGGTGTGAACGATTTGCAAGCTGTAGTGTTTGAGATTGTTATCACATTTGGGTTGGTTTACACTGTGTATGCAACTGCAGTAGACCCAAAGAAGGGGTCATTGGGTATCATTGCACCCATTGCTATTGGGTTCGTTGTGGGTGCCAACATCTTAGCAGCAGGCCCATTCAGCGGCGGTTCAATGAACCCAGCTCGCTCATTCGGCCCAGCTGTGGTCAGTGGAGACTTGGCTGCTAACTGGATCTACTGGGTTGGCCCATTGATTGGAGGAGGTTTGGCTGGCTTGATTTATGGAGACGTCTTCATTGGTTCCTATGCCCCTGTCCCAGCCTCTGAAACCTACCCTTGA
>Glyma01g41670.1 sequence type=predicted peptide gene model=Glyma01g41670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVKIALGTLDDSFSAASLKAYFAEFHATLIFVFAGVGSAIAYNELTKDAALDPTGLVAVAVAHAFALFVGVSVAANISGGHLNPAVTFGLAIGGNITLITGFLYWIAQLLGSIVACLLLNLITAKSIPSHSPANGVNDLQAVVFEIVITFGLVYTVYATAVDPKKGSLGIIAPIAIGFVVGANILAAGPFSGGSMNPARSFGPAVVSGDLAANWIYWVGPLIGGGLAGLIYGDVFIGSYAPVPASETYP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
