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Report for Sequence Feature Glyma01g41650

Feature Type:gene_model
Chromosome:Gm01
Start:53099972
stop:53102602
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17360AT Annotation by Michelle Graham. TAIR10: Formyl transferase | chr4:9703698-9705468 REVERSE LENGTH=328 SoyBaseE_val: 1.00E-159ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0006189GO-bp Annotation by Michelle Graham. GO Biological Process: 'de novo' IMP biosynthetic process SoyBaseN/AISS
GO:0009058GO-bp Annotation by Michelle Graham. GO Biological Process: biosynthetic process SoyBaseN/AISS
GO:0009152GO-bp Annotation by Michelle Graham. GO Biological Process: purine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0043085GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity SoyBaseN/AISS
GO:0046653GO-bp Annotation by Michelle Graham. GO Biological Process: tetrahydrofolate metabolic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0008168GO-mf Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity SoyBaseN/AISS
GO:0008864GO-mf Annotation by Michelle Graham. GO Molecular Function: formyltetrahydrofolate deformylase activity SoyBaseN/AISS
GO:0016742GO-mf Annotation by Michelle Graham. GO Molecular Function: hydroxymethyl-, formyl- and related transferase activity SoyBaseN/AISS
KOG3076 KOG 5'-phosphoribosylglycinamide formyltransferase JGI ISS
PTHR10520Panther PHOSPHORIBOSYLAMINE-GLYCINE LIGASE JGI ISS
PTHR10520:SF7Panther FORMYLTETRAHYDROFOLATE DEFORMYLASE JGI ISS
PF00551PFAM Formyl transferase JGI ISS
UniRef100_G7JXD1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Methionyl-tRNA formyltransferase n=2 Tax=Medicago truncatula RepID=G7JXD1_MEDTR SoyBaseE_val: 2.00E-179ISS
UniRef100_I1J9U4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1J9U4_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41650 not represented in the dataset

Glyma01g41650 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g03710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g208000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g41650.3   sequence type=transcript   gene model=Glyma01g41650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGACAAACACATACCCACCAAATAGATTAATTTTGAGATAGCCAAATGAAAATGGGCATCGTCCAAAGACTGTGTTCTAGTTGGAGTAACGTTTTCAGATTGGGCAACAGGAACAGTTACAGTTCTTTTAATAAATCTGTTGATCCCACAAACCCATCATGTTCCAGTTCTTCCTTCCTCACGCATGGAATCCACGTGTTTCAATGCCCCGATGCGGTTGGAATTGTAGCCAATCTATCGGATTGCATTGCTTCTCGGGGTGGCAACATTCTCTCTGCTGATGTTTTTGTACCTCAAAATAAACGAGTCTTCTACTCCAGAAATGTTTTTGTTTTTGATCCTGTCATGTGGCCTCGAATGCAAATGGAGGAGGATTTCCTAAGGATCTCTAAAACATTCAATGCCATGAGATCTGTTATAAGGGTGCCAGCTCTGGATCCTAAATATAAGATTGCTATTCTCGTAGCAAAGCAGGATGGAAGACTCTCAGTGGATATCACTTGTGTAATTAGTAACCATTATCGAAGTCCAGAAAATGAGGTGATTCGTTTTCTTGACATGCACGGTGTTCCTTATCATTATTTGAGAACAACAGCAGAGAATAAAAGAGAAGAGGAGATCTTGGAGCTGGTTCAAAATACTGATTTTTTAGTACTTGCGAGGTCTATGCGGATACTATCCAGCTTCTTTTTAAGGAGTTATGGGAAGGATATAATTAACATCCACCATGGCCTGTTACCATCATTTAGCGGTAGCAATCCATCTAAACAGGCCGTTGATGCAGGTGTGAAATTAATTGGTGCAACAAGTCACTTTGTGACTGAGGGACTTGATGCTGGACCTATTATTGAACAAATGGTTGAAAGAGTTTCCCATAGAGATAACTTGCAGAGCTATGTGCAGAAATCAGAGAACCTTGAGAAACAATGCCTCACAAGCGCTATCAGGTCTTATTGTGAGCTTCGAGTGTTGCCATATGAAAAAAAGAATACTGTCGTATTTTGAGGACAAACAACAATTATACACTCTGCCAAATGGGGGTATATCTCTATAAGTGCATATGATTATTTACTTCAAAAGCCCACGCTATGCTTATATTTGGATAAACTTATCAATAATTACTTTAAAAAAAAGTTGTTAAAATGAATTAAAATGGGGCATATCTCTATAAGTGCATATAATTATTTACTTCAAAAACCCACATTATGGTTATATTTGGACAAACTTATCAATAATTACTTAAAAGAAAATAATTAACTTCTCTCATAAGTTACAGTTAATGTACGCATAAGTTAAAAGAAAAAAAAATAGTGGGGTTACACGCGTGTCGTGGA

>Glyma01g41650.2   sequence type=CDS   gene model=Glyma01g41650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATGGGCATCGTCCAAAGACTGTGTTCTAGTTGGAGTAACGTTTTCAGATTGGGCAACAGGAACAGTTACAGTTCTTTTAATAAATCTGTTGATCCCACAAACCCATCATGTTCCAGTTCTTCCTTCCTCACGCATGGAATCCACGTGTTTCAATGCCCCGATGCGGTTGGAATTGTAGCCAATCTATCGGATTGCATTGCTTCTCGGGGTGGCAACATTCTCTCTGCTGATGTTTTTGTACCTCAAAATAAACGAGTCTTCTACTCCAGAAATGTTTTTGTTTTTGATCCTGTCATGTGGCCTCGAATGCAAATGGAGGAGGATTTCCTAAGGATCTCTAAAACATTCAATGCCATGAGATCTGTTATAAGGGTGCCAGCTCTGGATCCTAAATATAAGATTGCTATTCTCGTAGCAAAGCAGGACCACTGTCTGATTGATTTGTTACATGGATGGCAGGATGGAAGACTCTCAGTGGATATCACTTGTGTAATTAGTAACCATTATCGAAGTCCAGAAAATGAGGTGATTCGTTTTCTTGACATGCACGGTGTTCCTTATCATTATTTGAGAACAACAGCAGAGAATAAAAGAGAAGAGGAGATCTTGGAGCTGGTTCAAAATACTGATTTTTTAGTACTTGCGAGGTCTATGCGGATACTATCCAGCTTCTTTTTAAGGAGTTATGGGAAGGATATAATTAACATCCACCATGGCCTGTTACCATCATTTAGCGGTAGCAATCCATCTAAACAGGCCGTTGATGCAGGTGTGAAATTAATTGGTGCAACAAGTCACTTTGTGACTGAGGGACTTGATGCTGGACCTATTATTGAACAAATGGTTGAAAGAGTTTCCCATAGAGATAACTTGCAGAGCTATGTGCAGAAATCAGAGAACCTTGAGAAACAATGCCTCACAAGCGCTATCAGGTCTTATTGTGAGCTTCGAGTGTTGCCATATGAAAAAAAGAATACTGTCGTATTTTGA

>Glyma01g41650.3   sequence type=CDS   gene model=Glyma01g41650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATGGGCATCGTCCAAAGACTGTGTTCTAGTTGGAGTAACGTTTTCAGATTGGGCAACAGGAACAGTTACAGTTCTTTTAATAAATCTGTTGATCCCACAAACCCATCATGTTCCAGTTCTTCCTTCCTCACGCATGGAATCCACGTGTTTCAATGCCCCGATGCGGTTGGAATTGTAGCCAATCTATCGGATTGCATTGCTTCTCGGGGTGGCAACATTCTCTCTGCTGATGTTTTTGTACCTCAAAATAAACGAGTCTTCTACTCCAGAAATGTTTTTGTTTTTGATCCTGTCATGTGGCCTCGAATGCAAATGGAGGAGGATTTCCTAAGGATCTCTAAAACATTCAATGCCATGAGATCTGTTATAAGGGTGCCAGCTCTGGATCCTAAATATAAGATTGCTATTCTCGTAGCAAAGCAGGATGGAAGACTCTCAGTGGATATCACTTGTGTAATTAGTAACCATTATCGAAGTCCAGAAAATGAGGTGATTCGTTTTCTTGACATGCACGGTGTTCCTTATCATTATTTGAGAACAACAGCAGAGAATAAAAGAGAAGAGGAGATCTTGGAGCTGGTTCAAAATACTGATTTTTTAGTACTTGCGAGGTCTATGCGGATACTATCCAGCTTCTTTTTAAGGAGTTATGGGAAGGATATAATTAACATCCACCATGGCCTGTTACCATCATTTAGCGGTAGCAATCCATCTAAACAGGCCGTTGATGCAGGTGTGAAATTAATTGGTGCAACAAGTCACTTTGTGACTGAGGGACTTGATGCTGGACCTATTATTGAACAAATGGTTGAAAGAGTTTCCCATAGAGATAACTTGCAGAGCTATGTGCAGAAATCAGAGAACCTTGAGAAACAATGCCTCACAAGCGCTATCAGGTCTTATTGTGAGCTTCGAGTGTTGCCATATGAAAAAAAGAATACTGTCGTATTTTGA

>Glyma01g41650.2   sequence type=predicted peptide   gene model=Glyma01g41650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMGIVQRLCSSWSNVFRLGNRNSYSSFNKSVDPTNPSCSSSSFLTHGIHVFQCPDAVGIVANLSDCIASRGGNILSADVFVPQNKRVFYSRNVFVFDPVMWPRMQMEEDFLRISKTFNAMRSVIRVPALDPKYKIAILVAKQDHCLIDLLHGWQDGRLSVDITCVISNHYRSPENEVIRFLDMHGVPYHYLRTTAENKREEEILELVQNTDFLVLARSMRILSSFFLRSYGKDIINIHHGLLPSFSGSNPSKQAVDAGVKLIGATSHFVTEGLDAGPIIEQMVERVSHRDNLQSYVQKSENLEKQCLTSAIRSYCELRVLPYEKKNTVVF*

>Glyma01g41650.3   sequence type=predicted peptide   gene model=Glyma01g41650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMGIVQRLCSSWSNVFRLGNRNSYSSFNKSVDPTNPSCSSSSFLTHGIHVFQCPDAVGIVANLSDCIASRGGNILSADVFVPQNKRVFYSRNVFVFDPVMWPRMQMEEDFLRISKTFNAMRSVIRVPALDPKYKIAILVAKQDGRLSVDITCVISNHYRSPENEVIRFLDMHGVPYHYLRTTAENKREEEILELVQNTDFLVLARSMRILSSFFLRSYGKDIINIHHGLLPSFSGSNPSKQAVDAGVKLIGATSHFVTEGLDAGPIIEQMVERVSHRDNLQSYVQKSENLEKQCLTSAIRSYCELRVLPYEKKNTVVF*







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