Warning : Undefined variable $sxsome in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $sstart in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $send in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma01g41650): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1019
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma01g41650): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1021
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1025
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1031
Report for Sequence Feature Glyma01g41650
Feature Type: gene_model
Chromosome: Gm01
Start: 53099972
stop: 53102602
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g41650
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G17360 AT
Annotation by Michelle Graham. TAIR10: Formyl transferase | chr4:9703698-9705468 REVERSE LENGTH=328
SoyBase E_val: 1.00E-159 ISS
GO:0000023 GO-bp
Annotation by Michelle Graham. GO Biological Process: maltose metabolic process
SoyBase N/A ISS
GO:0006189 GO-bp
Annotation by Michelle Graham. GO Biological Process: 'de novo' IMP biosynthetic process
SoyBase N/A ISS
GO:0009058 GO-bp
Annotation by Michelle Graham. GO Biological Process: biosynthetic process
SoyBase N/A ISS
GO:0009152 GO-bp
Annotation by Michelle Graham. GO Biological Process: purine ribonucleotide biosynthetic process
SoyBase N/A ISS
GO:0009853 GO-bp
Annotation by Michelle Graham. GO Biological Process: photorespiration
SoyBase N/A ISS
GO:0019252 GO-bp
Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process
SoyBase N/A ISS
GO:0043085 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity
SoyBase N/A ISS
GO:0046653 GO-bp
Annotation by Michelle Graham. GO Biological Process: tetrahydrofolate metabolic process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0008168 GO-mf
Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity
SoyBase N/A ISS
GO:0008864 GO-mf
Annotation by Michelle Graham. GO Molecular Function: formyltetrahydrofolate deformylase activity
SoyBase N/A ISS
GO:0016742 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydroxymethyl-, formyl- and related transferase activity
SoyBase N/A ISS
KOG3076
KOG
5'-phosphoribosylglycinamide formyltransferase
JGI ISS
PTHR10520 Panther
PHOSPHORIBOSYLAMINE-GLYCINE LIGASE
JGI ISS
PTHR10520:SF7 Panther
FORMYLTETRAHYDROFOLATE DEFORMYLASE
JGI ISS
PF00551 PFAM
Formyl transferase
JGI ISS
UniRef100_G7JXD1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Methionyl-tRNA formyltransferase n=2 Tax=Medicago truncatula RepID=G7JXD1_MEDTR
SoyBase E_val: 2.00E-179 ISS
UniRef100_I1J9U4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1J9U4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g41650
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma01g41650
Paralog Evidence Comments
Glyma11g03710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g41650 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g208000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g41650
Transcripts of Glyma01g41650
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g41650.3 sequence type=transcript gene model=Glyma01g41650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GGACAAACACATACCCACCAAATAGATTAATTTTGAGATAGCCAAATGAAAATGGGCATCGTCCAAAGACTGTGTTCTAGTTGGAGTAACGTTTTCAGATTGGGCAACAGGAACAGTTACAGTTCTTTTAATAAATCTGTTGATCCCACAAACCCATCATGTTCCAGTTCTTCCTTCCTCACGCATGGAATCCACGTGTTTCAATGCCCCGATGCGGTTGGAATTGTAGCCAATCTATCGGATTGCATTGCTTCTCGGGGTGGCAACATTCTCTCTGCTGATGTTTTTGTACCTCAAAATAAACGAGTCTTCTACTCCAGAAATGTTTTTGTTTTTGATCCTGTCATGTGGCCTCGAATGCAAATGGAGGAGGATTTCCTAAGGATCTCTAAAACATTCAATGCCATGAGATCTGTTATAAGGGTGCCAGCTCTGGATCCTAAATATAAGATTGCTATTCTCGTAGCAAAGCAGGATGGAAGACTCTCAGTGGATATCACTTGTGTAATTAGTAACCATTATCGAAGTCCAGAAAATGAGGTGATTCGTTTTCTTGACATGCACGGTGTTCCTTATCATTATTTGAGAACAACAGCAGAGAATAAAAGAGAAGAGGAGATCTTGGAGCTGGTTCAAAATACTGATTTTTTAGTACTTGCGAGGTCTATGCGGATACTATCCAGCTTCTTTTTAAGGAGTTATGGGAAGGATATAATTAACATCCACCATGGCCTGTTACCATCATTTAGCGGTAGCAATCCATCTAAACAGGCCGTTGATGCAGGTGTGAAATTAATTGGTGCAACAAGTCACTTTGTGACTGAGGGACTTGATGCTGGACCTATTATTGAACAAATGGTTGAAAGAGTTTCCCATAGAGATAACTTGCAGAGCTATGTGCAGAAATCAGAGAACCTTGAGAAACAATGCCTCACAAGCGCTATCAGGTCTTATTGTGAGCTTCGAGTGTTGCCATATGAAAAAAAGAATACTGTCGTATTTTGAGGACAAACAACAATTATACACTCTGCCAAATGGGGGTATATCTCTATAAGTGCATATGATTATTTACTTCAAAAGCCCACGCTATGCTTATATTTGGATAAACTTATCAATAATTACTTTAAAAAAAAGTTGTTAAAATGAATTAAAATGGGGCATATCTCTATAAGTGCATATAATTATTTACTTCAAAAACCCACATTATGGTTATATTTGGACAAACTTATCAATAATTACTTAAAAGAAAATAATTAACTTCTCTCATAAGTTACAGTTAATGTACGCATAAGTTAAAAGAAAAAAAAATAGTGGGGTTACACGCGTGTCGTGGA
Coding sequences of Glyma01g41650
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g41650.2 sequence type=CDS gene model=Glyma01g41650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAAATGGGCATCGTCCAAAGACTGTGTTCTAGTTGGAGTAACGTTTTCAGATTGGGCAACAGGAACAGTTACAGTTCTTTTAATAAATCTGTTGATCCCACAAACCCATCATGTTCCAGTTCTTCCTTCCTCACGCATGGAATCCACGTGTTTCAATGCCCCGATGCGGTTGGAATTGTAGCCAATCTATCGGATTGCATTGCTTCTCGGGGTGGCAACATTCTCTCTGCTGATGTTTTTGTACCTCAAAATAAACGAGTCTTCTACTCCAGAAATGTTTTTGTTTTTGATCCTGTCATGTGGCCTCGAATGCAAATGGAGGAGGATTTCCTAAGGATCTCTAAAACATTCAATGCCATGAGATCTGTTATAAGGGTGCCAGCTCTGGATCCTAAATATAAGATTGCTATTCTCGTAGCAAAGCAGGACCACTGTCTGATTGATTTGTTACATGGATGGCAGGATGGAAGACTCTCAGTGGATATCACTTGTGTAATTAGTAACCATTATCGAAGTCCAGAAAATGAGGTGATTCGTTTTCTTGACATGCACGGTGTTCCTTATCATTATTTGAGAACAACAGCAGAGAATAAAAGAGAAGAGGAGATCTTGGAGCTGGTTCAAAATACTGATTTTTTAGTACTTGCGAGGTCTATGCGGATACTATCCAGCTTCTTTTTAAGGAGTTATGGGAAGGATATAATTAACATCCACCATGGCCTGTTACCATCATTTAGCGGTAGCAATCCATCTAAACAGGCCGTTGATGCAGGTGTGAAATTAATTGGTGCAACAAGTCACTTTGTGACTGAGGGACTTGATGCTGGACCTATTATTGAACAAATGGTTGAAAGAGTTTCCCATAGAGATAACTTGCAGAGCTATGTGCAGAAATCAGAGAACCTTGAGAAACAATGCCTCACAAGCGCTATCAGGTCTTATTGTGAGCTTCGAGTGTTGCCATATGAAAAAAAGAATACTGTCGTATTTTGA
>Glyma01g41650.3 sequence type=CDS gene model=Glyma01g41650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAAATGGGCATCGTCCAAAGACTGTGTTCTAGTTGGAGTAACGTTTTCAGATTGGGCAACAGGAACAGTTACAGTTCTTTTAATAAATCTGTTGATCCCACAAACCCATCATGTTCCAGTTCTTCCTTCCTCACGCATGGAATCCACGTGTTTCAATGCCCCGATGCGGTTGGAATTGTAGCCAATCTATCGGATTGCATTGCTTCTCGGGGTGGCAACATTCTCTCTGCTGATGTTTTTGTACCTCAAAATAAACGAGTCTTCTACTCCAGAAATGTTTTTGTTTTTGATCCTGTCATGTGGCCTCGAATGCAAATGGAGGAGGATTTCCTAAGGATCTCTAAAACATTCAATGCCATGAGATCTGTTATAAGGGTGCCAGCTCTGGATCCTAAATATAAGATTGCTATTCTCGTAGCAAAGCAGGATGGAAGACTCTCAGTGGATATCACTTGTGTAATTAGTAACCATTATCGAAGTCCAGAAAATGAGGTGATTCGTTTTCTTGACATGCACGGTGTTCCTTATCATTATTTGAGAACAACAGCAGAGAATAAAAGAGAAGAGGAGATCTTGGAGCTGGTTCAAAATACTGATTTTTTAGTACTTGCGAGGTCTATGCGGATACTATCCAGCTTCTTTTTAAGGAGTTATGGGAAGGATATAATTAACATCCACCATGGCCTGTTACCATCATTTAGCGGTAGCAATCCATCTAAACAGGCCGTTGATGCAGGTGTGAAATTAATTGGTGCAACAAGTCACTTTGTGACTGAGGGACTTGATGCTGGACCTATTATTGAACAAATGGTTGAAAGAGTTTCCCATAGAGATAACTTGCAGAGCTATGTGCAGAAATCAGAGAACCTTGAGAAACAATGCCTCACAAGCGCTATCAGGTCTTATTGTGAGCTTCGAGTGTTGCCATATGAAAAAAAGAATACTGTCGTATTTTGA
Predicted protein sequences of Glyma01g41650
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g41650.2 sequence type=predicted peptide gene model=Glyma01g41650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKMGIVQRLCSSWSNVFRLGNRNSYSSFNKSVDPTNPSCSSSSFLTHGIHVFQCPDAVGIVANLSDCIASRGGNILSADVFVPQNKRVFYSRNVFVFDPVMWPRMQMEEDFLRISKTFNAMRSVIRVPALDPKYKIAILVAKQDHCLIDLLHGWQDGRLSVDITCVISNHYRSPENEVIRFLDMHGVPYHYLRTTAENKREEEILELVQNTDFLVLARSMRILSSFFLRSYGKDIINIHHGLLPSFSGSNPSKQAVDAGVKLIGATSHFVTEGLDAGPIIEQMVERVSHRDNLQSYVQKSENLEKQCLTSAIRSYCELRVLPYEKKNTVVF*
>Glyma01g41650.3 sequence type=predicted peptide gene model=Glyma01g41650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKMGIVQRLCSSWSNVFRLGNRNSYSSFNKSVDPTNPSCSSSSFLTHGIHVFQCPDAVGIVANLSDCIASRGGNILSADVFVPQNKRVFYSRNVFVFDPVMWPRMQMEEDFLRISKTFNAMRSVIRVPALDPKYKIAILVAKQDGRLSVDITCVISNHYRSPENEVIRFLDMHGVPYHYLRTTAENKREEEILELVQNTDFLVLARSMRILSSFFLRSYGKDIINIHHGLLPSFSGSNPSKQAVDAGVKLIGATSHFVTEGLDAGPIIEQMVERVSHRDNLQSYVQKSENLEKQCLTSAIRSYCELRVLPYEKKNTVVF*