Glyma01g41650 - SoyBase

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Report for Sequence Feature Glyma01g41650

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53099972
stop:	53102602
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g41650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17360	AT	Annotation by Michelle Graham. TAIR10: Formyl transferase \| chr4:9703698-9705468 REVERSE LENGTH=328	SoyBase	E_val: 1.00E-159	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0006189	GO-bp	Annotation by Michelle Graham. GO Biological Process: 'de novo' IMP biosynthetic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009152	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine ribonucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0046653	GO-bp	Annotation by Michelle Graham. GO Biological Process: tetrahydrofolate metabolic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0008168	GO-mf	Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity	SoyBase	N/A	ISS
GO:0008864	GO-mf	Annotation by Michelle Graham. GO Molecular Function: formyltetrahydrofolate deformylase activity	SoyBase	N/A	ISS
GO:0016742	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydroxymethyl-, formyl- and related transferase activity	SoyBase	N/A	ISS
KOG3076	KOG	5'-phosphoribosylglycinamide formyltransferase	JGI		ISS
PTHR10520	Panther	PHOSPHORIBOSYLAMINE-GLYCINE LIGASE	JGI		ISS
PTHR10520:SF7	Panther	FORMYLTETRAHYDROFOLATE DEFORMYLASE	JGI		ISS
PF00551	PFAM	Formyl transferase	JGI		ISS
UniRef100_G7JXD1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Methionyl-tRNA formyltransferase n=2 Tax=Medicago truncatula RepID=G7JXD1_MEDTR	SoyBase	E_val: 2.00E-179	ISS
UniRef100_I1J9U4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1J9U4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g41650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41650 not represented in the dataset	Glyma01g41650 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g41650

Paralog	Evidence	Comments
Glyma11g03710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g41650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g208000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g41650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g41650

Limit To All Plant Sequences

>Glyma01g41650.3   sequence type=transcript   gene model=Glyma01g41650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGACAAACACATACCCACCAAATAGATTAATTTTGAGATAGCCAAATGAAAATGGGCATCGTCCAAAGACTGTGTTCTAGTTGGAGTAACGTTTTCAGATTGGGCAACAGGAACAGTTACAGTTCTTTTAATAAATCTGTTGATCCCACAAACCCATCATGTTCCAGTTCTTCCTTCCTCACGCATGGAATCCACGTGTTTCAATGCCCCGATGCGGTTGGAATTGTAGCCAATCTATCGGATTGCATTGCTTCTCGGGGTGGCAACATTCTCTCTGCTGATGTTTTTGTACCTCAAAATAAACGAGTCTTCTACTCCAGAAATGTTTTTGTTTTTGATCCTGTCATGTGGCCTCGAATGCAAATGGAGGAGGATTTCCTAAGGATCTCTAAAACATTCAATGCCATGAGATCTGTTATAAGGGTGCCAGCTCTGGATCCTAAATATAAGATTGCTATTCTCGTAGCAAAGCAGGATGGAAGACTCTCAGTGGATATCACTTGTGTAATTAGTAACCATTATCGAAGTCCAGAAAATGAGGTGATTCGTTTTCTTGACATGCACGGTGTTCCTTATCATTATTTGAGAACAACAGCAGAGAATAAAAGAGAAGAGGAGATCTTGGAGCTGGTTCAAAATACTGATTTTTTAGTACTTGCGAGGTCTATGCGGATACTATCCAGCTTCTTTTTAAGGAGTTATGGGAAGGATATAATTAACATCCACCATGGCCTGTTACCATCATTTAGCGGTAGCAATCCATCTAAACAGGCCGTTGATGCAGGTGTGAAATTAATTGGTGCAACAAGTCACTTTGTGACTGAGGGACTTGATGCTGGACCTATTATTGAACAAATGGTTGAAAGAGTTTCCCATAGAGATAACTTGCAGAGCTATGTGCAGAAATCAGAGAACCTTGAGAAACAATGCCTCACAAGCGCTATCAGGTCTTATTGTGAGCTTCGAGTGTTGCCATATGAAAAAAAGAATACTGTCGTATTTTGAGGACAAACAACAATTATACACTCTGCCAAATGGGGGTATATCTCTATAAGTGCATATGATTATTTACTTCAAAAGCCCACGCTATGCTTATATTTGGATAAACTTATCAATAATTACTTTAAAAAAAAGTTGTTAAAATGAATTAAAATGGGGCATATCTCTATAAGTGCATATAATTATTTACTTCAAAAACCCACATTATGGTTATATTTGGACAAACTTATCAATAATTACTTAAAAGAAAATAATTAACTTCTCTCATAAGTTACAGTTAATGTACGCATAAGTTAAAAGAAAAAAAAATAGTGGGGTTACACGCGTGTCGTGGA

Coding sequences of Glyma01g41650

Limit To All Plant Sequences

>Glyma01g41650.2   sequence type=CDS   gene model=Glyma01g41650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATGGGCATCGTCCAAAGACTGTGTTCTAGTTGGAGTAACGTTTTCAGATTGGGCAACAGGAACAGTTACAGTTCTTTTAATAAATCTGTTGATCCCACAAACCCATCATGTTCCAGTTCTTCCTTCCTCACGCATGGAATCCACGTGTTTCAATGCCCCGATGCGGTTGGAATTGTAGCCAATCTATCGGATTGCATTGCTTCTCGGGGTGGCAACATTCTCTCTGCTGATGTTTTTGTACCTCAAAATAAACGAGTCTTCTACTCCAGAAATGTTTTTGTTTTTGATCCTGTCATGTGGCCTCGAATGCAAATGGAGGAGGATTTCCTAAGGATCTCTAAAACATTCAATGCCATGAGATCTGTTATAAGGGTGCCAGCTCTGGATCCTAAATATAAGATTGCTATTCTCGTAGCAAAGCAGGACCACTGTCTGATTGATTTGTTACATGGATGGCAGGATGGAAGACTCTCAGTGGATATCACTTGTGTAATTAGTAACCATTATCGAAGTCCAGAAAATGAGGTGATTCGTTTTCTTGACATGCACGGTGTTCCTTATCATTATTTGAGAACAACAGCAGAGAATAAAAGAGAAGAGGAGATCTTGGAGCTGGTTCAAAATACTGATTTTTTAGTACTTGCGAGGTCTATGCGGATACTATCCAGCTTCTTTTTAAGGAGTTATGGGAAGGATATAATTAACATCCACCATGGCCTGTTACCATCATTTAGCGGTAGCAATCCATCTAAACAGGCCGTTGATGCAGGTGTGAAATTAATTGGTGCAACAAGTCACTTTGTGACTGAGGGACTTGATGCTGGACCTATTATTGAACAAATGGTTGAAAGAGTTTCCCATAGAGATAACTTGCAGAGCTATGTGCAGAAATCAGAGAACCTTGAGAAACAATGCCTCACAAGCGCTATCAGGTCTTATTGTGAGCTTCGAGTGTTGCCATATGAAAAAAAGAATACTGTCGTATTTTGA

>Glyma01g41650.3   sequence type=CDS   gene model=Glyma01g41650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATGGGCATCGTCCAAAGACTGTGTTCTAGTTGGAGTAACGTTTTCAGATTGGGCAACAGGAACAGTTACAGTTCTTTTAATAAATCTGTTGATCCCACAAACCCATCATGTTCCAGTTCTTCCTTCCTCACGCATGGAATCCACGTGTTTCAATGCCCCGATGCGGTTGGAATTGTAGCCAATCTATCGGATTGCATTGCTTCTCGGGGTGGCAACATTCTCTCTGCTGATGTTTTTGTACCTCAAAATAAACGAGTCTTCTACTCCAGAAATGTTTTTGTTTTTGATCCTGTCATGTGGCCTCGAATGCAAATGGAGGAGGATTTCCTAAGGATCTCTAAAACATTCAATGCCATGAGATCTGTTATAAGGGTGCCAGCTCTGGATCCTAAATATAAGATTGCTATTCTCGTAGCAAAGCAGGATGGAAGACTCTCAGTGGATATCACTTGTGTAATTAGTAACCATTATCGAAGTCCAGAAAATGAGGTGATTCGTTTTCTTGACATGCACGGTGTTCCTTATCATTATTTGAGAACAACAGCAGAGAATAAAAGAGAAGAGGAGATCTTGGAGCTGGTTCAAAATACTGATTTTTTAGTACTTGCGAGGTCTATGCGGATACTATCCAGCTTCTTTTTAAGGAGTTATGGGAAGGATATAATTAACATCCACCATGGCCTGTTACCATCATTTAGCGGTAGCAATCCATCTAAACAGGCCGTTGATGCAGGTGTGAAATTAATTGGTGCAACAAGTCACTTTGTGACTGAGGGACTTGATGCTGGACCTATTATTGAACAAATGGTTGAAAGAGTTTCCCATAGAGATAACTTGCAGAGCTATGTGCAGAAATCAGAGAACCTTGAGAAACAATGCCTCACAAGCGCTATCAGGTCTTATTGTGAGCTTCGAGTGTTGCCATATGAAAAAAAGAATACTGTCGTATTTTGA

Predicted protein sequences of Glyma01g41650

Limit To All Plant Sequences

>Glyma01g41650.2   sequence type=predicted peptide   gene model=Glyma01g41650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMGIVQRLCSSWSNVFRLGNRNSYSSFNKSVDPTNPSCSSSSFLTHGIHVFQCPDAVGIVANLSDCIASRGGNILSADVFVPQNKRVFYSRNVFVFDPVMWPRMQMEEDFLRISKTFNAMRSVIRVPALDPKYKIAILVAKQDHCLIDLLHGWQDGRLSVDITCVISNHYRSPENEVIRFLDMHGVPYHYLRTTAENKREEEILELVQNTDFLVLARSMRILSSFFLRSYGKDIINIHHGLLPSFSGSNPSKQAVDAGVKLIGATSHFVTEGLDAGPIIEQMVERVSHRDNLQSYVQKSENLEKQCLTSAIRSYCELRVLPYEKKNTVVF*

>Glyma01g41650.3   sequence type=predicted peptide   gene model=Glyma01g41650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKMGIVQRLCSSWSNVFRLGNRNSYSSFNKSVDPTNPSCSSSSFLTHGIHVFQCPDAVGIVANLSDCIASRGGNILSADVFVPQNKRVFYSRNVFVFDPVMWPRMQMEEDFLRISKTFNAMRSVIRVPALDPKYKIAILVAKQDGRLSVDITCVISNHYRSPENEVIRFLDMHGVPYHYLRTTAENKREEEILELVQNTDFLVLARSMRILSSFFLRSYGKDIINIHHGLLPSFSGSNPSKQAVDAGVKLIGATSHFVTEGLDAGPIIEQMVERVSHRDNLQSYVQKSENLEKQCLTSAIRSYCELRVLPYEKKNTVVF*

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