Glyma01g41620 - SoyBase

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Report for Sequence Feature Glyma01g41620

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53074903
stop:	53077150
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g41620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G16720	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein L23/L15e family protein \| chr4:9400156-9401315 REVERSE LENGTH=204	SoyBase	E_val: 6.00E-122	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1678	KOG	60s ribosomal protein L15	JGI		ISS
PTHR11847	Panther	RIBOSOMAL PROTEIN L15	JGI		ISS
PF00827	PFAM	Ribosomal L15	JGI		ISS
UniRef100_C6SV78	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L15 n=2 Tax=Glycine max RepID=C6SV78_SOYBN	SoyBase	E_val: 7.00E-145	ISS
UniRef100_C6SV78	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ribosomal protein L15 n=2 Tax=Glycine max RepID=C6SV78_SOYBN	SoyBase	E_val: 7.00E-145	ISS

Expression Patterns of Glyma01g41620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41620 not represented in the dataset	Glyma01g41620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g41620

Paralog	Evidence	Comments
Glyma11g03755	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g41620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g207700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g41620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g41620

Limit To All Plant Sequences

>Glyma01g41620.2   sequence type=transcript   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCGCGGGTGAGGTAGAACCCTTCCACTGTGGTGACTCTGCGATGGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTCATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGTTTGTTATTGTATTACTTCTGTTGAAATTGAAATTTGGTTGTGAATCATGTGTTGATTTGGTAAAAGCTTGTCATGGTGTTTC

>Glyma01g41620.3   sequence type=transcript   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAGATCTAAGTGATTTTAAATATAGTTGGTCTTTTGGAACGAGAGAGACTTGTTTTGGCAAGCTGCATGCATTTGATTTCATAATTGGTTTTTGTGGTGTAATCCAATTGTCTTATCTCACATGCACCAACCAGATGTTAATTAAATTAAATACTGTACAGTCTTGGGCTCTTAGTGTTATCATCAATTTAGGTCTAACAACTCATTGGTGTCAAGTAATATCAAACGATTAGTCGTTAGGTTGGACAATTTGGTATATATAGCTTTTGGTTATTCTGATGGAATTATGTGTGGTACCTGTGTTGGAAGTGTAATTGATAAAACGTGTTGTTTATGTTGGTGTGATTGGCAATAGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTCATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTTTGAGGTGATTCTGGTGGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCGCCAATCCAGTGCACAAGCACAGAGAGCTGCGTGGGCTTACCTCTGCCGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTATATCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCTCTCCGCCGCTACCGTTAATTTCGCTGTCATCTTATTTTTGCTTCATTTTCTGAAATACTATTTTGAGAACACACAGCATTTGATGTTTTGACTTTGAAATTCGAGTTTTGAATGATTTAATCATCTTTTTCTATAAATTGACGAGTTTTTCTATTGTTAAATTCAAAGTTCATACTTGATATTATTTGTTATTTAGCTCGTGGAATTGGAAAGCTGGACCTGTCATTTCACTGGTTACCTTTACAATATTATTTTATATGGTCGAAAACTTTGTTTCAATTTTGTCAGTTTAATTAAATTACACATTTCGAATTAACA

>Glyma01g41620.4   sequence type=transcript   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTGTCCTTGTAAAGCTGTTGCACATTCCCTTGTTTGTTTCAGTACAATGTTGATTGTGATTATGACAATGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTTTGAGGTGATTCTGGTGGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCGCCAATCCAGTGCACAAGCACAGAGAGCTGCGTGGGCTTACCTCTGCCGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTATATCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCTCTCCGCCGCTACCGTTAATTTCGCTGTCATCTTATTTTTGCTTCATTTTCTGAAATACTATTTTGAGAACACACAGCATTTGATGTTTTGACTTTGAAATTCGAGTTTTGAATGATTTAATCATCTTTTTCTATAAATTGACGAGTTTTTCTATTGTTAAATTCAAAGTTCATACTTGATATTATTTGTTATTTAGCTCGTGGAATTGGAAAGCTGGACCTGTCATTTCACTGGTTACCTTTACAATATTATTTTATATGGTCGAAAACTTTGTTTCAATTTTGTCAGTTTAATTAAATTACACATTTCGAATTAACA

Coding sequences of Glyma01g41620

Limit To All Plant Sequences

>Glyma01g41620.1   sequence type=CDS   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTCATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTTTGAGGTGATTCTGGTGGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCGCCAATCCAGTGCACAAGCACAGAGAGCTGCGTGGGCTTACCTCTGCCGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTATATCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCTCTCCGCCGCTACCGTTAA

>Glyma01g41620.2   sequence type=CDS   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTCATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGTTTGTTATTGTATTACTTCTGTTGAAATTGAAATTTGGTTGTGA

>Glyma01g41620.3   sequence type=CDS   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTTTGAGGTGATTCTGGTGGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCGCCAATCCAGTGCACAAGCACAGAGAGCTGCGTGGGCTTACCTCTGCCGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTATATCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCTCTCCGCCGCTACCGTTAA

>Glyma01g41620.4   sequence type=CDS   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGATTGTGATTATGACAATGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTTTGAGGTGATTCTGGTGGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCGCCAATCCAGTGCACAAGCACAGAGAGCTGCGTGGGCTTACCTCTGCCGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTATATCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCTCTCCGCCGCTACCGTTAA

Predicted protein sequences of Glyma01g41620

Limit To All Plant Sequences

>Glyma01g41620.1   sequence type=predicted peptide   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRSTRPDKARRLGFKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHAAIRNDPRINWLANPVHKHRELRGLTSAGKSNRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR*

>Glyma01g41620.2   sequence type=predicted peptide   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRSTRPDKARRLGFKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEVCYCITSVEIEIWL*

>Glyma01g41620.3   sequence type=predicted peptide   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRFLQRVRCWEYRQQPSIVRLTRSTRPDKARRLGFKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHAAIRNDPRINWLANPVHKHRELRGLTSAGKSNRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR*

>Glyma01g41620.4   sequence type=predicted peptide   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLIVIMTMQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHAAIRNDPRINWLANPVHKHRELRGLTSAGKSNRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR*

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