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Report for Sequence Feature Glyma01g41620
Feature Type: gene_model
Chromosome: Gm01
Start: 53074903
stop: 53077150
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g41620
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G16720 AT
Annotation by Michelle Graham. TAIR10: Ribosomal protein L23/L15e family protein | chr4:9400156-9401315 REVERSE LENGTH=204
SoyBase E_val: 6.00E-122 ISS
GO:0001510 GO-bp
Annotation by Michelle Graham. GO Biological Process: RNA methylation
SoyBase N/A ISS
GO:0006412 GO-bp
Annotation by Michelle Graham. GO Biological Process: translation
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005774 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0005840 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: ribosome
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0022625 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit
SoyBase N/A ISS
GO:0022626 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome
SoyBase N/A ISS
GO:0003735 GO-mf
Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome
SoyBase N/A ISS
KOG1678
KOG
60s ribosomal protein L15
JGI ISS
PTHR11847 Panther
RIBOSOMAL PROTEIN L15
JGI ISS
PF00827 PFAM
Ribosomal L15
JGI ISS
UniRef100_C6SV78 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L15 n=2 Tax=Glycine max RepID=C6SV78_SOYBN
SoyBase E_val: 7.00E-145 ISS
UniRef100_C6SV78 UniRef
Annotation by Michelle Graham. Best UniRef hit: Ribosomal protein L15 n=2 Tax=Glycine max RepID=C6SV78_SOYBN
SoyBase E_val: 7.00E-145 ISS
Expression Patterns of Glyma01g41620
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma01g41620
Paralog Evidence Comments
Glyma11g03755 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g41620 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g207700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g41620
Transcripts of Glyma01g41620
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g41620.2 sequence type=transcript gene model=Glyma01g41620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GGCGCGGGTGAGGTAGAACCCTTCCACTGTGGTGACTCTGCGATGGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTCATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGTTTGTTATTGTATTACTTCTGTTGAAATTGAAATTTGGTTGTGAATCATGTGTTGATTTGGTAAAAGCTTGTCATGGTGTTTC
>Glyma01g41620.3 sequence type=transcript gene model=Glyma01g41620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TCAGATCTAAGTGATTTTAAATATAGTTGGTCTTTTGGAACGAGAGAGACTTGTTTTGGCAAGCTGCATGCATTTGATTTCATAATTGGTTTTTGTGGTGTAATCCAATTGTCTTATCTCACATGCACCAACCAGATGTTAATTAAATTAAATACTGTACAGTCTTGGGCTCTTAGTGTTATCATCAATTTAGGTCTAACAACTCATTGGTGTCAAGTAATATCAAACGATTAGTCGTTAGGTTGGACAATTTGGTATATATAGCTTTTGGTTATTCTGATGGAATTATGTGTGGTACCTGTGTTGGAAGTGTAATTGATAAAACGTGTTGTTTATGTTGGTGTGATTGGCAATAGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTCATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTTTGAGGTGATTCTGGTGGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCGCCAATCCAGTGCACAAGCACAGAGAGCTGCGTGGGCTTACCTCTGCCGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTATATCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCTCTCCGCCGCTACCGTTAATTTCGCTGTCATCTTATTTTTGCTTCATTTTCTGAAATACTATTTTGAGAACACACAGCATTTGATGTTTTGACTTTGAAATTCGAGTTTTGAATGATTTAATCATCTTTTTCTATAAATTGACGAGTTTTTCTATTGTTAAATTCAAAGTTCATACTTGATATTATTTGTTATTTAGCTCGTGGAATTGGAAAGCTGGACCTGTCATTTCACTGGTTACCTTTACAATATTATTTTATATGGTCGAAAACTTTGTTTCAATTTTGTCAGTTTAATTAAATTACACATTTCGAATTAACA
>Glyma01g41620.4 sequence type=transcript gene model=Glyma01g41620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TCTGTCCTTGTAAAGCTGTTGCACATTCCCTTGTTTGTTTCAGTACAATGTTGATTGTGATTATGACAATGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTTTGAGGTGATTCTGGTGGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCGCCAATCCAGTGCACAAGCACAGAGAGCTGCGTGGGCTTACCTCTGCCGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTATATCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCTCTCCGCCGCTACCGTTAATTTCGCTGTCATCTTATTTTTGCTTCATTTTCTGAAATACTATTTTGAGAACACACAGCATTTGATGTTTTGACTTTGAAATTCGAGTTTTGAATGATTTAATCATCTTTTTCTATAAATTGACGAGTTTTTCTATTGTTAAATTCAAAGTTCATACTTGATATTATTTGTTATTTAGCTCGTGGAATTGGAAAGCTGGACCTGTCATTTCACTGGTTACCTTTACAATATTATTTTATATGGTCGAAAACTTTGTTTCAATTTTGTCAGTTTAATTAAATTACACATTTCGAATTAACA
Coding sequences of Glyma01g41620
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g41620.1 sequence type=CDS gene model=Glyma01g41620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTCATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTTTGAGGTGATTCTGGTGGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCGCCAATCCAGTGCACAAGCACAGAGAGCTGCGTGGGCTTACCTCTGCCGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTATATCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCTCTCCGCCGCTACCGTTAA
>Glyma01g41620.2 sequence type=CDS gene model=Glyma01g41620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTCATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGTTTGTTATTGTATTACTTCTGTTGAAATTGAAATTTGGTTGTGA
>Glyma01g41620.3 sequence type=CDS gene model=Glyma01g41620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTTTGAGGTGATTCTGGTGGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCGCCAATCCAGTGCACAAGCACAGAGAGCTGCGTGGGCTTACCTCTGCCGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTATATCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCTCTCCGCCGCTACCGTTAA
>Glyma01g41620.4 sequence type=CDS gene model=Glyma01g41620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTGATTGTGATTATGACAATGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTTTGAGGTGATTCTGGTGGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCGCCAATCCAGTGCACAAGCACAGAGAGCTGCGTGGGCTTACCTCTGCCGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTATATCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCTCTCCGCCGCTACCGTTAA
Predicted protein sequences of Glyma01g41620
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g41620.1 sequence type=predicted peptide gene model=Glyma01g41620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRSTRPDKARRLGFKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHAAIRNDPRINWLANPVHKHRELRGLTSAGKSNRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR*
>Glyma01g41620.2 sequence type=predicted peptide gene model=Glyma01g41620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRSTRPDKARRLGFKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEVCYCITSVEIEIWL*
>Glyma01g41620.3 sequence type=predicted peptide gene model=Glyma01g41620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MRFLQRVRCWEYRQQPSIVRLTRSTRPDKARRLGFKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHAAIRNDPRINWLANPVHKHRELRGLTSAGKSNRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR*
>Glyma01g41620.4 sequence type=predicted peptide gene model=Glyma01g41620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLIVIMTMQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHAAIRNDPRINWLANPVHKHRELRGLTSAGKSNRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR*