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Report for Sequence Feature Glyma01g41620

Feature Type:gene_model
Chromosome:Gm01
Start:53074903
stop:53077150
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16720AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L23/L15e family protein | chr4:9400156-9401315 REVERSE LENGTH=204 SoyBaseE_val: 6.00E-122ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0022625GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG1678 KOG 60s ribosomal protein L15 JGI ISS
PTHR11847Panther RIBOSOMAL PROTEIN L15 JGI ISS
PF00827PFAM Ribosomal L15 JGI ISS
UniRef100_C6SV78UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein L15 n=2 Tax=Glycine max RepID=C6SV78_SOYBN SoyBaseE_val: 7.00E-145ISS
UniRef100_C6SV78UniRef Annotation by Michelle Graham. Best UniRef hit: Ribosomal protein L15 n=2 Tax=Glycine max RepID=C6SV78_SOYBN SoyBaseE_val: 7.00E-145ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41620 not represented in the dataset

Glyma01g41620 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g03755 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g207700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g41620.2   sequence type=transcript   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCGCGGGTGAGGTAGAACCCTTCCACTGTGGTGACTCTGCGATGGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTCATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGTTTGTTATTGTATTACTTCTGTTGAAATTGAAATTTGGTTGTGAATCATGTGTTGATTTGGTAAAAGCTTGTCATGGTGTTTC

>Glyma01g41620.3   sequence type=transcript   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAGATCTAAGTGATTTTAAATATAGTTGGTCTTTTGGAACGAGAGAGACTTGTTTTGGCAAGCTGCATGCATTTGATTTCATAATTGGTTTTTGTGGTGTAATCCAATTGTCTTATCTCACATGCACCAACCAGATGTTAATTAAATTAAATACTGTACAGTCTTGGGCTCTTAGTGTTATCATCAATTTAGGTCTAACAACTCATTGGTGTCAAGTAATATCAAACGATTAGTCGTTAGGTTGGACAATTTGGTATATATAGCTTTTGGTTATTCTGATGGAATTATGTGTGGTACCTGTGTTGGAAGTGTAATTGATAAAACGTGTTGTTTATGTTGGTGTGATTGGCAATAGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTCATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTTTGAGGTGATTCTGGTGGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCGCCAATCCAGTGCACAAGCACAGAGAGCTGCGTGGGCTTACCTCTGCCGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTATATCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCTCTCCGCCGCTACCGTTAATTTCGCTGTCATCTTATTTTTGCTTCATTTTCTGAAATACTATTTTGAGAACACACAGCATTTGATGTTTTGACTTTGAAATTCGAGTTTTGAATGATTTAATCATCTTTTTCTATAAATTGACGAGTTTTTCTATTGTTAAATTCAAAGTTCATACTTGATATTATTTGTTATTTAGCTCGTGGAATTGGAAAGCTGGACCTGTCATTTCACTGGTTACCTTTACAATATTATTTTATATGGTCGAAAACTTTGTTTCAATTTTGTCAGTTTAATTAAATTACACATTTCGAATTAACA

>Glyma01g41620.4   sequence type=transcript   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTGTCCTTGTAAAGCTGTTGCACATTCCCTTGTTTGTTTCAGTACAATGTTGATTGTGATTATGACAATGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTTTGAGGTGATTCTGGTGGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCGCCAATCCAGTGCACAAGCACAGAGAGCTGCGTGGGCTTACCTCTGCCGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTATATCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCTCTCCGCCGCTACCGTTAATTTCGCTGTCATCTTATTTTTGCTTCATTTTCTGAAATACTATTTTGAGAACACACAGCATTTGATGTTTTGACTTTGAAATTCGAGTTTTGAATGATTTAATCATCTTTTTCTATAAATTGACGAGTTTTTCTATTGTTAAATTCAAAGTTCATACTTGATATTATTTGTTATTTAGCTCGTGGAATTGGAAAGCTGGACCTGTCATTTCACTGGTTACCTTTACAATATTATTTTATATGGTCGAAAACTTTGTTTCAATTTTGTCAGTTTAATTAAATTACACATTTCGAATTAACA

>Glyma01g41620.1   sequence type=CDS   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTCATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTTTGAGGTGATTCTGGTGGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCGCCAATCCAGTGCACAAGCACAGAGAGCTGCGTGGGCTTACCTCTGCCGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTATATCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCTCTCCGCCGCTACCGTTAA

>Glyma01g41620.2   sequence type=CDS   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTCATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGTTTGTTATTGTATTACTTCTGTTGAAATTGAAATTTGGTTGTGA

>Glyma01g41620.3   sequence type=CDS   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGCTTCTTGCAGCGGGTGAGGTGCTGGGAGTATAGGCAGCAACCTTCCATTGTTCGTTTGACAAGGTCTACCCGCCCTGACAAGGCTCGTCGCTTGGGCTTCAAGGCTAAGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTTTGAGGTGATTCTGGTGGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCGCCAATCCAGTGCACAAGCACAGAGAGCTGCGTGGGCTTACCTCTGCCGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTATATCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCTCTCCGCCGCTACCGTTAA

>Glyma01g41620.4   sequence type=CDS   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGATTGTGATTATGACAATGCAGGGCTATGTGATTTACCGTGTTCGTGTTAGGAGGGGTGGCCGAAAGAGACCAGTTCCCAAAGGTATTGTTTATGGGAAGCCCACAAACCAGGGAGTTACCCAACTGAAATTTCAGCGAAGCAAGAGGTCAGTTGCCGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCTACTTATAAATACTTTGAGGTGATTCTGGTGGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCGCCAATCCAGTGCACAAGCACAGAGAGCTGCGTGGGCTTACCTCTGCCGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTATATCACAAAGCACGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTGTCTCTCCGCCGCTACCGTTAA

>Glyma01g41620.1   sequence type=predicted peptide   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRSTRPDKARRLGFKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHAAIRNDPRINWLANPVHKHRELRGLTSAGKSNRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR*

>Glyma01g41620.2   sequence type=predicted peptide   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRSTRPDKARRLGFKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEVCYCITSVEIEIWL*

>Glyma01g41620.3   sequence type=predicted peptide   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRFLQRVRCWEYRQQPSIVRLTRSTRPDKARRLGFKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHAAIRNDPRINWLANPVHKHRELRGLTSAGKSNRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR*

>Glyma01g41620.4   sequence type=predicted peptide   gene model=Glyma01g41620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLIVIMTMQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEVILVDVAHAAIRNDPRINWLANPVHKHRELRGLTSAGKSNRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR*







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