SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G16760 | AT | Annotation by Michelle Graham. TAIR10: acyl-CoA oxidase 1 | chr4:9424930-9428689 REVERSE LENGTH=664 | SoyBase | E_val: 0 | ISS |
| GO:0001676 | GO-bp | Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0002213 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to insect | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009620 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fungus | SoyBase | N/A | ISS |
| GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003995 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acyl-CoA dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0003997 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acyl-CoA oxidase activity | SoyBase | N/A | ISS |
| GO:0016627 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG0136 | KOG | Acyl-CoA oxidase | JGI | ISS | |
| PTHR10909 | Panther | ELECTRON TRANSPORT OXIDOREDUCTASE | JGI | ISS | |
| PTHR10909:SF11 | Panther | gb def: mupu [pseudomonas fluorescens] | JGI | ISS | |
| PF01756 | PFAM | Acyl-CoA oxidase | JGI | ISS | |
| PF02770 | PFAM | Acyl-CoA dehydrogenase, middle domain | JGI | ISS | |
| UniRef100_I1J9T7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Acyl-coenzyme A oxidase n=1 Tax=Glycine max RepID=I1J9T7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J9T7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Acyl-coenzyme A oxidase n=1 Tax=Glycine max RepID=I1J9T7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g41600 not represented in the dataset |
Glyma01g41600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g03800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g207500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g41600.1 sequence type=CDS gene model=Glyma01g41600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAATATGAAATATTCAGTTCCGATTCCAATGTTATCACGTTTTCTTCTTTTGGCACGTTGAAAACACAACTTAACCACATAAAGCATCCACTATTCTATTCTAATTGCTGTTACTGTAACACAACACAATCTTCATTCATCACTGAAACCAAAGCCACAAGCTGCGACATCAGAAAGACATTGGCGAGAATGGAAGACAGTATTGACCACTTGGCTTTCGAGAGGAACAAGGCGCAGTTCGATGTTGACGAGATGAAGATCGTTTGGGCGGGTTCTCGTCAAGACTTTGAGCTTTCCGATCGGATTTCTCGCCTTGTTGCCAGCGATCCGGCCTTCAGAAAGGATGACAGAACCACGCTTGGTAGGAAGGAGTTGTTTAAAAACACCTTGAGAAAAGCAGCTTATGCATGGAAAAGGATCAACGAGCTCCGTCTTAATGAACAGGAAGCTTATAAGCTCAGATCCTTTGTGGATCAACCTGCTTTTACGGATCTTCATTGGGGAATGTTTGTGCCTGCTATCCAAGGACAAGGCACTGACGAACAGCAGCAGAAGTGGTTGCCTCTAGCTTATAGGATGCAAATAATCGGTTGCTATGCCCAAACTGAACTTGGTCATGGGTCCAATGTTCAAGGGCTAGAAACAACTGCAACATTTGATCCCAAAACAGACGAATTTGTTATCCATAACCCCACATTGACTTCCAGCAAATGGTGGCCCGGTGGATTGGGTAAAATATCCACCCATGCTGTTGTTTATGCCCGTCTAATTATTGGTGGTGAAGACCATGGAGTGCATGGTTTCATTGTCCAGCTGCGGAGCTTGGATGATCACTTGCCTCTTTCAGGCATAACTATTGGTGATATTGGGATGAAATTTGGAAATGCAGCATATAACACCATGGACAATGGAGTTCTAAGATTTGACCATGTACGAATTCCAAGGAATCAAATGTTAATGAGGGTTTCACAGGTTACCAGAGAAGGAAAATATGTACACTCCAATGTTCCAAGACAATTAGTTTATGGTACTATGGTAAATGTGAGACAAAAAATTGTAGCTGATGCATCGGTTGCTTTGTCTCGAGCAGTTTGCATTGCTACAAGATATAGTGCTGTTAGAAGACAGTTTGGATCACATAATGGAGGTCTAGAAACACAGGTGATTGATTACAAAACACAGCAGGCTAGGCTCTTCCCATTGCTGGCTTCTGCTTATGCTTTCAGATTTGTGGGCGAGTGGCTGAAATGGCTTTATATGGATGTGACGAAAAGATTGCAAGCTAATGATTTTTCAACATTACCTGAGGCTCATGCATGCACTGCTGGGTTGAAATCCTTGACTACTACGGCAACTGCTGATGGAATTGAAGAATGCCGTAAACTATGTGGCGGTCATGGTTACCTTTGTAGCAGTGGTCTCCCTGAGTTATTTGCTGTTTATGTTCCTGCCTGCACGTATGAAGGAGACAATATTGTGCTTCTTTTACAGGTGGCAAGGTATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAAGCCTGTTGGTACTACAGCTTATATGGCTCGAGTGGAACAACTGATGCAATATCACTCTGATGTTAAAAAGGCTGAGGACTGGTTGAAGCCTAATGTAGTGTTGGAAGCATTTGAAGCTAGGGCTGCTAGGATGTCAGTTGCTTGTGCTCAAAATCTTAGCAAGTTCACTAATCCTGAGGAGGGTTTTCAAGAACTAGCTGCTGATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCAATTAGAAGTTCTTTGCAGCATTTATGCTTTGTTTCTACTTCATAAGCATCTGGGTGATTTTCTTTCCACTGGCTGCATTAACCCAAAACAAGGATCACTTGCCAGTGAGCAGCTGAGAAACTTGTATTCACAGGTTCGTCCTAATGCAATTGCGCTTGTTGATGCATTTAACTACACTGATCACTACCTTGGTTCAATTCTTGGACGTTACGATGGAAATGTGTATCCGAAGTTGTACGAGGAGGCATGGAAGGATCCTTTGAATGATTCAGTTGTTCCTGATGGCTTTAAAGAGTATATTCAACCGATGCTTAAGCAGCAACTACGTAATGCTAGGCTGTAG
>Glyma01g41600.1 sequence type=predicted peptide gene model=Glyma01g41600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKYEIFSSDSNVITFSSFGTLKTQLNHIKHPLFYSNCCYCNTTQSSFITETKATSCDIRKTLARMEDSIDHLAFERNKAQFDVDEMKIVWAGSRQDFELSDRISRLVASDPAFRKDDRTTLGRKELFKNTLRKAAYAWKRINELRLNEQEAYKLRSFVDQPAFTDLHWGMFVPAIQGQGTDEQQQKWLPLAYRMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHNPTLTSSKWWPGGLGKISTHAVVYARLIIGGEDHGVHGFIVQLRSLDDHLPLSGITIGDIGMKFGNAAYNTMDNGVLRFDHVRIPRNQMLMRVSQVTREGKYVHSNVPRQLVYGTMVNVRQKIVADASVALSRAVCIATRYSAVRRQFGSHNGGLETQVIDYKTQQARLFPLLASAYAFRFVGEWLKWLYMDVTKRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARYLMKTVSQLGSGNKPVGTTAYMARVEQLMQYHSDVKKAEDWLKPNVVLEAFEARAARMSVACAQNLSKFTNPEEGFQELAADLVDAAVAHCQLIVVSKFIEKLQQDIPGKGVKKQLEVLCSIYALFLLHKHLGDFLSTGCINPKQGSLASEQLRNLYSQVRPNAIALVDAFNYTDHYLGSILGRYDGNVYPKLYEEAWKDPLNDSVVPDGFKEYIQPMLKQQLRNARL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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