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Report for Sequence Feature Glyma01g41600

Feature Type:gene_model
Chromosome:Gm01
Start:53056869
stop:53063971
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16760AT Annotation by Michelle Graham. TAIR10: acyl-CoA oxidase 1 | chr4:9424930-9428689 REVERSE LENGTH=664 SoyBaseE_val: 0ISS
GO:0001676GO-bp Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process SoyBaseN/AISS
GO:0002213GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to insect SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006631GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process SoyBaseN/AISS
GO:0006633GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0003995GO-mf Annotation by Michelle Graham. GO Molecular Function: acyl-CoA dehydrogenase activity SoyBaseN/AISS
GO:0003997GO-mf Annotation by Michelle Graham. GO Molecular Function: acyl-CoA oxidase activity SoyBaseN/AISS
GO:0016627GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors SoyBaseN/AISS
GO:0050660GO-mf Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding SoyBaseN/AISS
KOG0136 KOG Acyl-CoA oxidase JGI ISS
PTHR10909Panther ELECTRON TRANSPORT OXIDOREDUCTASE JGI ISS
PTHR10909:SF11Panther gb def: mupu [pseudomonas fluorescens] JGI ISS
PF01756PFAM Acyl-CoA oxidase JGI ISS
PF02770PFAM Acyl-CoA dehydrogenase, middle domain JGI ISS
UniRef100_I1J9T7UniRef Annotation by Michelle Graham. Best UniRef hit: Acyl-coenzyme A oxidase n=1 Tax=Glycine max RepID=I1J9T7_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1J9T7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Acyl-coenzyme A oxidase n=1 Tax=Glycine max RepID=I1J9T7_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41600 not represented in the dataset

Glyma01g41600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g03800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g207500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g41600.1   sequence type=CDS   gene model=Glyma01g41600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATATGAAATATTCAGTTCCGATTCCAATGTTATCACGTTTTCTTCTTTTGGCACGTTGAAAACACAACTTAACCACATAAAGCATCCACTATTCTATTCTAATTGCTGTTACTGTAACACAACACAATCTTCATTCATCACTGAAACCAAAGCCACAAGCTGCGACATCAGAAAGACATTGGCGAGAATGGAAGACAGTATTGACCACTTGGCTTTCGAGAGGAACAAGGCGCAGTTCGATGTTGACGAGATGAAGATCGTTTGGGCGGGTTCTCGTCAAGACTTTGAGCTTTCCGATCGGATTTCTCGCCTTGTTGCCAGCGATCCGGCCTTCAGAAAGGATGACAGAACCACGCTTGGTAGGAAGGAGTTGTTTAAAAACACCTTGAGAAAAGCAGCTTATGCATGGAAAAGGATCAACGAGCTCCGTCTTAATGAACAGGAAGCTTATAAGCTCAGATCCTTTGTGGATCAACCTGCTTTTACGGATCTTCATTGGGGAATGTTTGTGCCTGCTATCCAAGGACAAGGCACTGACGAACAGCAGCAGAAGTGGTTGCCTCTAGCTTATAGGATGCAAATAATCGGTTGCTATGCCCAAACTGAACTTGGTCATGGGTCCAATGTTCAAGGGCTAGAAACAACTGCAACATTTGATCCCAAAACAGACGAATTTGTTATCCATAACCCCACATTGACTTCCAGCAAATGGTGGCCCGGTGGATTGGGTAAAATATCCACCCATGCTGTTGTTTATGCCCGTCTAATTATTGGTGGTGAAGACCATGGAGTGCATGGTTTCATTGTCCAGCTGCGGAGCTTGGATGATCACTTGCCTCTTTCAGGCATAACTATTGGTGATATTGGGATGAAATTTGGAAATGCAGCATATAACACCATGGACAATGGAGTTCTAAGATTTGACCATGTACGAATTCCAAGGAATCAAATGTTAATGAGGGTTTCACAGGTTACCAGAGAAGGAAAATATGTACACTCCAATGTTCCAAGACAATTAGTTTATGGTACTATGGTAAATGTGAGACAAAAAATTGTAGCTGATGCATCGGTTGCTTTGTCTCGAGCAGTTTGCATTGCTACAAGATATAGTGCTGTTAGAAGACAGTTTGGATCACATAATGGAGGTCTAGAAACACAGGTGATTGATTACAAAACACAGCAGGCTAGGCTCTTCCCATTGCTGGCTTCTGCTTATGCTTTCAGATTTGTGGGCGAGTGGCTGAAATGGCTTTATATGGATGTGACGAAAAGATTGCAAGCTAATGATTTTTCAACATTACCTGAGGCTCATGCATGCACTGCTGGGTTGAAATCCTTGACTACTACGGCAACTGCTGATGGAATTGAAGAATGCCGTAAACTATGTGGCGGTCATGGTTACCTTTGTAGCAGTGGTCTCCCTGAGTTATTTGCTGTTTATGTTCCTGCCTGCACGTATGAAGGAGACAATATTGTGCTTCTTTTACAGGTGGCAAGGTATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAAGCCTGTTGGTACTACAGCTTATATGGCTCGAGTGGAACAACTGATGCAATATCACTCTGATGTTAAAAAGGCTGAGGACTGGTTGAAGCCTAATGTAGTGTTGGAAGCATTTGAAGCTAGGGCTGCTAGGATGTCAGTTGCTTGTGCTCAAAATCTTAGCAAGTTCACTAATCCTGAGGAGGGTTTTCAAGAACTAGCTGCTGATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCAATTAGAAGTTCTTTGCAGCATTTATGCTTTGTTTCTACTTCATAAGCATCTGGGTGATTTTCTTTCCACTGGCTGCATTAACCCAAAACAAGGATCACTTGCCAGTGAGCAGCTGAGAAACTTGTATTCACAGGTTCGTCCTAATGCAATTGCGCTTGTTGATGCATTTAACTACACTGATCACTACCTTGGTTCAATTCTTGGACGTTACGATGGAAATGTGTATCCGAAGTTGTACGAGGAGGCATGGAAGGATCCTTTGAATGATTCAGTTGTTCCTGATGGCTTTAAAGAGTATATTCAACCGATGCTTAAGCAGCAACTACGTAATGCTAGGCTGTAG

>Glyma01g41600.1   sequence type=predicted peptide   gene model=Glyma01g41600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKYEIFSSDSNVITFSSFGTLKTQLNHIKHPLFYSNCCYCNTTQSSFITETKATSCDIRKTLARMEDSIDHLAFERNKAQFDVDEMKIVWAGSRQDFELSDRISRLVASDPAFRKDDRTTLGRKELFKNTLRKAAYAWKRINELRLNEQEAYKLRSFVDQPAFTDLHWGMFVPAIQGQGTDEQQQKWLPLAYRMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHNPTLTSSKWWPGGLGKISTHAVVYARLIIGGEDHGVHGFIVQLRSLDDHLPLSGITIGDIGMKFGNAAYNTMDNGVLRFDHVRIPRNQMLMRVSQVTREGKYVHSNVPRQLVYGTMVNVRQKIVADASVALSRAVCIATRYSAVRRQFGSHNGGLETQVIDYKTQQARLFPLLASAYAFRFVGEWLKWLYMDVTKRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARYLMKTVSQLGSGNKPVGTTAYMARVEQLMQYHSDVKKAEDWLKPNVVLEAFEARAARMSVACAQNLSKFTNPEEGFQELAADLVDAAVAHCQLIVVSKFIEKLQQDIPGKGVKKQLEVLCSIYALFLLHKHLGDFLSTGCINPKQGSLASEQLRNLYSQVRPNAIALVDAFNYTDHYLGSILGRYDGNVYPKLYEEAWKDPLNDSVVPDGFKEYIQPMLKQQLRNARL*







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