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Report for Sequence Feature Glyma01g41600
Feature Type: gene_model
Chromosome: Gm01
Start: 53056869
stop: 53063971
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g41600
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G16760 AT
Annotation by Michelle Graham. TAIR10: acyl-CoA oxidase 1 | chr4:9424930-9428689 REVERSE LENGTH=664
SoyBase E_val: 0 ISS
GO:0001676 GO-bp
Annotation by Michelle Graham. GO Biological Process: long-chain fatty acid metabolic process
SoyBase N/A ISS
GO:0002213 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to insect
SoyBase N/A ISS
GO:0006612 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane
SoyBase N/A ISS
GO:0006631 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid metabolic process
SoyBase N/A ISS
GO:0006633 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process
SoyBase N/A ISS
GO:0006635 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation
SoyBase N/A ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009555 GO-bp
Annotation by Michelle Graham. GO Biological Process: pollen development
SoyBase N/A ISS
GO:0009611 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to wounding
SoyBase N/A ISS
GO:0009620 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to fungus
SoyBase N/A ISS
GO:0009695 GO-bp
Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process
SoyBase N/A ISS
GO:0009753 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus
SoyBase N/A ISS
GO:0009863 GO-bp
Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway
SoyBase N/A ISS
GO:0010363 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response
SoyBase N/A ISS
GO:0043069 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death
SoyBase N/A ISS
GO:0046686 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cadmium ion
SoyBase N/A ISS
GO:0050832 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to fungus
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005777 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: peroxisome
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0003995 GO-mf
Annotation by Michelle Graham. GO Molecular Function: acyl-CoA dehydrogenase activity
SoyBase N/A ISS
GO:0003997 GO-mf
Annotation by Michelle Graham. GO Molecular Function: acyl-CoA oxidase activity
SoyBase N/A ISS
GO:0016627 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors
SoyBase N/A ISS
GO:0050660 GO-mf
Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding
SoyBase N/A ISS
KOG0136
KOG
Acyl-CoA oxidase
JGI ISS
PTHR10909 Panther
ELECTRON TRANSPORT OXIDOREDUCTASE
JGI ISS
PTHR10909:SF11 Panther
gb def: mupu [pseudomonas fluorescens]
JGI ISS
PF01756 PFAM
Acyl-CoA oxidase
JGI ISS
PF02770 PFAM
Acyl-CoA dehydrogenase, middle domain
JGI ISS
UniRef100_I1J9T7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Acyl-coenzyme A oxidase n=1 Tax=Glycine max RepID=I1J9T7_SOYBN
SoyBase E_val: 0 ISS
UniRef100_I1J9T7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Acyl-coenzyme A oxidase n=1 Tax=Glycine max RepID=I1J9T7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g41600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma01g41600
Paralog Evidence Comments
Glyma11g03800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g41600 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g207500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g41600
Coding sequences of Glyma01g41600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g41600.1 sequence type=CDS gene model=Glyma01g41600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAATATGAAATATTCAGTTCCGATTCCAATGTTATCACGTTTTCTTCTTTTGGCACGTTGAAAACACAACTTAACCACATAAAGCATCCACTATTCTATTCTAATTGCTGTTACTGTAACACAACACAATCTTCATTCATCACTGAAACCAAAGCCACAAGCTGCGACATCAGAAAGACATTGGCGAGAATGGAAGACAGTATTGACCACTTGGCTTTCGAGAGGAACAAGGCGCAGTTCGATGTTGACGAGATGAAGATCGTTTGGGCGGGTTCTCGTCAAGACTTTGAGCTTTCCGATCGGATTTCTCGCCTTGTTGCCAGCGATCCGGCCTTCAGAAAGGATGACAGAACCACGCTTGGTAGGAAGGAGTTGTTTAAAAACACCTTGAGAAAAGCAGCTTATGCATGGAAAAGGATCAACGAGCTCCGTCTTAATGAACAGGAAGCTTATAAGCTCAGATCCTTTGTGGATCAACCTGCTTTTACGGATCTTCATTGGGGAATGTTTGTGCCTGCTATCCAAGGACAAGGCACTGACGAACAGCAGCAGAAGTGGTTGCCTCTAGCTTATAGGATGCAAATAATCGGTTGCTATGCCCAAACTGAACTTGGTCATGGGTCCAATGTTCAAGGGCTAGAAACAACTGCAACATTTGATCCCAAAACAGACGAATTTGTTATCCATAACCCCACATTGACTTCCAGCAAATGGTGGCCCGGTGGATTGGGTAAAATATCCACCCATGCTGTTGTTTATGCCCGTCTAATTATTGGTGGTGAAGACCATGGAGTGCATGGTTTCATTGTCCAGCTGCGGAGCTTGGATGATCACTTGCCTCTTTCAGGCATAACTATTGGTGATATTGGGATGAAATTTGGAAATGCAGCATATAACACCATGGACAATGGAGTTCTAAGATTTGACCATGTACGAATTCCAAGGAATCAAATGTTAATGAGGGTTTCACAGGTTACCAGAGAAGGAAAATATGTACACTCCAATGTTCCAAGACAATTAGTTTATGGTACTATGGTAAATGTGAGACAAAAAATTGTAGCTGATGCATCGGTTGCTTTGTCTCGAGCAGTTTGCATTGCTACAAGATATAGTGCTGTTAGAAGACAGTTTGGATCACATAATGGAGGTCTAGAAACACAGGTGATTGATTACAAAACACAGCAGGCTAGGCTCTTCCCATTGCTGGCTTCTGCTTATGCTTTCAGATTTGTGGGCGAGTGGCTGAAATGGCTTTATATGGATGTGACGAAAAGATTGCAAGCTAATGATTTTTCAACATTACCTGAGGCTCATGCATGCACTGCTGGGTTGAAATCCTTGACTACTACGGCAACTGCTGATGGAATTGAAGAATGCCGTAAACTATGTGGCGGTCATGGTTACCTTTGTAGCAGTGGTCTCCCTGAGTTATTTGCTGTTTATGTTCCTGCCTGCACGTATGAAGGAGACAATATTGTGCTTCTTTTACAGGTGGCAAGGTATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAAGCCTGTTGGTACTACAGCTTATATGGCTCGAGTGGAACAACTGATGCAATATCACTCTGATGTTAAAAAGGCTGAGGACTGGTTGAAGCCTAATGTAGTGTTGGAAGCATTTGAAGCTAGGGCTGCTAGGATGTCAGTTGCTTGTGCTCAAAATCTTAGCAAGTTCACTAATCCTGAGGAGGGTTTTCAAGAACTAGCTGCTGATTTAGTTGATGCGGCAGTTGCTCATTGCCAGTTAATCGTTGTTTCCAAATTTATTGAGAAGTTGCAGCAAGATATCCCTGGAAAGGGAGTAAAAAAGCAATTAGAAGTTCTTTGCAGCATTTATGCTTTGTTTCTACTTCATAAGCATCTGGGTGATTTTCTTTCCACTGGCTGCATTAACCCAAAACAAGGATCACTTGCCAGTGAGCAGCTGAGAAACTTGTATTCACAGGTTCGTCCTAATGCAATTGCGCTTGTTGATGCATTTAACTACACTGATCACTACCTTGGTTCAATTCTTGGACGTTACGATGGAAATGTGTATCCGAAGTTGTACGAGGAGGCATGGAAGGATCCTTTGAATGATTCAGTTGTTCCTGATGGCTTTAAAGAGTATATTCAACCGATGCTTAAGCAGCAACTACGTAATGCTAGGCTGTAG
Predicted protein sequences of Glyma01g41600
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g41600.1 sequence type=predicted peptide gene model=Glyma01g41600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKYEIFSSDSNVITFSSFGTLKTQLNHIKHPLFYSNCCYCNTTQSSFITETKATSCDIRKTLARMEDSIDHLAFERNKAQFDVDEMKIVWAGSRQDFELSDRISRLVASDPAFRKDDRTTLGRKELFKNTLRKAAYAWKRINELRLNEQEAYKLRSFVDQPAFTDLHWGMFVPAIQGQGTDEQQQKWLPLAYRMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHNPTLTSSKWWPGGLGKISTHAVVYARLIIGGEDHGVHGFIVQLRSLDDHLPLSGITIGDIGMKFGNAAYNTMDNGVLRFDHVRIPRNQMLMRVSQVTREGKYVHSNVPRQLVYGTMVNVRQKIVADASVALSRAVCIATRYSAVRRQFGSHNGGLETQVIDYKTQQARLFPLLASAYAFRFVGEWLKWLYMDVTKRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARYLMKTVSQLGSGNKPVGTTAYMARVEQLMQYHSDVKKAEDWLKPNVVLEAFEARAARMSVACAQNLSKFTNPEEGFQELAADLVDAAVAHCQLIVVSKFIEKLQQDIPGKGVKKQLEVLCSIYALFLLHKHLGDFLSTGCINPKQGSLASEQLRNLYSQVRPNAIALVDAFNYTDHYLGSILGRYDGNVYPKLYEEAWKDPLNDSVVPDGFKEYIQPMLKQQLRNARL*