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Report for Sequence Feature Glyma01g41581

Feature Type:gene_model
Chromosome:Gm01
Start:53045633
stop:53047524
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47370AT Annotation by Michelle Graham. TAIR10: Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein | chr5:19216482-19217647 REVERSE LENGTH=283 SoyBaseE_val: 6.00E-103ISS
GO:0006351GO-bp Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009641GO-bp Annotation by Michelle Graham. GO Biological Process: shade avoidance SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009734GO-bp Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway SoyBaseN/AISS
GO:0009826GO-bp Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
KOG0483 KOG Transcription factor HEX, contains HOX and HALZ domains JGI ISS
PTHR24326Panther FAMILY NOT NAMED JGI ISS
PTHR24326:SF218Panther JGI ISS
PF00046PFAM Homeobox domain JGI ISS
PF02183PFAM Homeobox associated leucine zipper JGI ISS
PF04618PFAM HD-ZIP protein N terminus JGI ISS
UniRef100_Q39862UniRef Annotation by Michelle Graham. Most informative UniRef hit: Homeobox-leucine zipper protein n=1 Tax=Glycine max RepID=Q39862_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI00023373F8UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023373F8 related cluster n=1 Tax=unknown RepID=UPI00023373F8 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41581 not represented in the dataset

Glyma01g41581 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g03850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g207300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g41581.1   sequence type=CDS   gene model=Glyma01g41581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGTTCAAAAGGAAGATTTGGGCTTGAGTCTAAGTTTGAGCTTCCCTCTCCTCTCCTCTTCTCCTTCCAGCCACAACCCTCAGAAACCCTCTTGGAACGACCCTATTTTCACTTCTTCAGGTGAAGCTGGATCATTCCTCCGCGGAATCGATGTGAACCGTTTACCTTCTGTGGTTGATTGCGAAGAGGAAGCAGGTGTTTCATCTCCAAACAGCACGGTTTCTAGCGTCAGTGGAAAGCGCAGCGAGAGGGAAACCAATGGAGAAGAAAACGACACAGACAGAGCTTGTTCCAGAGGCATCATCAGCGACGAAGAAGATGCTGAAACCTCTAGAAAGAAACTTAGACTCTCCAAAGATCAGTCAATTGTCCTGGAAGAGAGCTTCAAAGAACACAACACTCTTAACCCCAAGCAAAAGTTGGCACTGGCGAAACAGCTGGGTCTTCGAGCGAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACGAAGCTGAAGCAAACGGAGGTTGACTGCGAGTTTTTGAAAAGGTGCTGCGAGAATCTGACGGAGGAAAACAGGAGGTTGCAGAAGGAAGTGCAAGAGCTTAGAGCACTGAAACTTTCCCCGCAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCCTCGTGTGAGCGTGTCGCGGTTCCCCCCTCCTCTGCCGTTGATCCTGCCACGCGTCACCATCACGTGCCTCCATCTCACCCCCGGGCCTTTCCCATTGGCCCATGGGCCAGGCCCTTCGATGCCCTCCGTCCCAGATCTTAG

>Glyma01g41581.1   sequence type=predicted peptide   gene model=Glyma01g41581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVQKEDLGLSLSLSFPLLSSSPSSHNPQKPSWNDPIFTSSGEAGSFLRGIDVNRLPSVVDCEEEAGVSSPNSTVSSVSGKRSERETNGEENDTDRACSRGIISDEEDAETSRKKLRLSKDQSIVLEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSSAVDPATRHHHVPPSHPRAFPIGPWARPFDALRPRS*







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