Glyma01g41581 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma01g41581): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma01g41581): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma01g41581

Feature Type:	gene_model
Chromosome:	Gm01
Start:	53045633
stop:	53047524
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g41581

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47370	AT	Annotation by Michelle Graham. TAIR10: Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein \| chr5:19216482-19217647 REVERSE LENGTH=283	SoyBase	E_val: 6.00E-103	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009641	GO-bp	Annotation by Michelle Graham. GO Biological Process: shade avoidance	SoyBase	N/A	ISS
GO:0009733	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus	SoyBase	N/A	ISS
GO:0009734	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin mediated signaling pathway	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0483	KOG	Transcription factor HEX, contains HOX and HALZ domains	JGI		ISS
PTHR24326	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24326:SF218	Panther		JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
PF02183	PFAM	Homeobox associated leucine zipper	JGI		ISS
PF04618	PFAM	HD-ZIP protein N terminus	JGI		ISS
UniRef100_Q39862	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Homeobox-leucine zipper protein n=1 Tax=Glycine max RepID=Q39862_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI00023373F8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023373F8 related cluster n=1 Tax=unknown RepID=UPI00023373F8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g41581

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41581 not represented in the dataset	Glyma01g41581 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g41581

Paralog	Evidence	Comments
Glyma11g03850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g41581 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g207300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g41581

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g41581

Limit To All Plant Sequences

>Glyma01g41581.1   sequence type=CDS   gene model=Glyma01g41581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGTTCAAAAGGAAGATTTGGGCTTGAGTCTAAGTTTGAGCTTCCCTCTCCTCTCCTCTTCTCCTTCCAGCCACAACCCTCAGAAACCCTCTTGGAACGACCCTATTTTCACTTCTTCAGGTGAAGCTGGATCATTCCTCCGCGGAATCGATGTGAACCGTTTACCTTCTGTGGTTGATTGCGAAGAGGAAGCAGGTGTTTCATCTCCAAACAGCACGGTTTCTAGCGTCAGTGGAAAGCGCAGCGAGAGGGAAACCAATGGAGAAGAAAACGACACAGACAGAGCTTGTTCCAGAGGCATCATCAGCGACGAAGAAGATGCTGAAACCTCTAGAAAGAAACTTAGACTCTCCAAAGATCAGTCAATTGTCCTGGAAGAGAGCTTCAAAGAACACAACACTCTTAACCCCAAGCAAAAGTTGGCACTGGCGAAACAGCTGGGTCTTCGAGCGAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACGAAGCTGAAGCAAACGGAGGTTGACTGCGAGTTTTTGAAAAGGTGCTGCGAGAATCTGACGGAGGAAAACAGGAGGTTGCAGAAGGAAGTGCAAGAGCTTAGAGCACTGAAACTTTCCCCGCAGTTCTACATGCACATGACCCCACCCACCACCCTCACCATGTGCCCCTCGTGTGAGCGTGTCGCGGTTCCCCCCTCCTCTGCCGTTGATCCTGCCACGCGTCACCATCACGTGCCTCCATCTCACCCCCGGGCCTTTCCCATTGGCCCATGGGCCAGGCCCTTCGATGCCCTCCGTCCCAGATCTTAG

Predicted protein sequences of Glyma01g41581

Limit To All Plant Sequences

>Glyma01g41581.1   sequence type=predicted peptide   gene model=Glyma01g41581   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVQKEDLGLSLSLSFPLLSSSPSSHNPQKPSWNDPIFTSSGEAGSFLRGIDVNRLPSVVDCEEEAGVSSPNSTVSSVSGKRSERETNGEENDTDRACSRGIISDEEDAETSRKKLRLSKDQSIVLEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPPSSAVDPATRHHHVPPSHPRAFPIGPWARPFDALRPRS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain