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Report for Sequence Feature Glyma01g41560
Feature Type: gene_model
Chromosome: Gm01
Start: 53022511
stop: 53024733
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g41560
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G53110 AT
Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr5:21529022-21533008 FORWARD LENGTH=382
SoyBase E_val: 1.00E-17 ISS
GO:0006865 GO-bp
Annotation by Michelle Graham. GO Biological Process: amino acid transport
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
UniRef100_G7JXF0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RING-H2 finger protein ATL1E n=1 Tax=Medicago truncatula RepID=G7JXF0_MEDTR
SoyBase E_val: 3.00E-91 ISS
UniRef100_UPI00023379E4 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023379E4 related cluster n=1 Tax=unknown RepID=UPI00023379E4
SoyBase E_val: 5.00E-179 ISS
Expression Patterns of Glyma01g41560
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma01g41560
Paralog Evidence Comments
Glyma11g03870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g41560 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g207100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g41560
Transcripts of Glyma01g41560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g41560.3 sequence type=transcript gene model=Glyma01g41560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ACGTCGTTAAGTGCTGATATTAATTTTGCTTAAGTCCTGATTTTCCCCATTCTTTCTTCTTCAAACAGGCACTCCTCGAGTTCTTCCTTCTTCCTTACAAATCCCTTCATTATGGGCATAAACTCCAATATATCAGTTCTATATAGCAGTTGTTACTCAAAATGAAGGACCTGTTCATTTGCATATTTTGCTCATTCAAAATCATTAAAACGATTTAGGTTTCATAGTGAATGATAAGTTAGCGGAATTCAACGACTTTGGATTGTTAACATCCATACATCTTTCTCCTAGGAAGCAAACACAACACTCCACTGATCGTGCCCTGGGTTCTTACCATAATTTTCTTTCCTTTCTAATTTCTATATTTTTTATTTTATTATTAATTGGATATTATTTTCCTCAGCTGATTAGTATACATGGTAGCCAATTTTTTGTGAATTACATATTTTTTTCCTAATTTGGACTAAAGTCTGAAACCGCTGACAAAGATTAGTGTCCAAGTCAAGCAAATTAGTCAGAGAAATTTAGTTAGGATAGTGGAAGAGGAAGACATAAGTGTTGGTGGCAAGCCCCTTGGTGCAAGGCGCTGAATTGGTCAACATTCAAGTTCATTCAGGCACTTAGTGTGACTTTTGAAAAGTTTATTCCATCTGTTTGTTCCTTTACAAAAAATTGCTTATGTTACCCCCCATCAGACTTCTACTGCTTTATGACCCGAAGCTTGTTGAAGCCTGCAAGAAACCAAGTCTTTTAATGCTTTTTTGCAAAATTCTTCTAGTCTAGGGCGGTTCAAGTTTCTTAACAAATACTAGATTCATTTGTTTATTCTTGGTCTTCGTCCCCCACCAATAAGTCTCAAGTGATGGGTGCATTCATCTTCCTTTTCCTCTTGTGTGTTTTCTGCTTCCAAAGTAAGGTGACCTATGCTACAAGGTGTGGAGATGCAGGCCCTGAAATCCACTATCCATATCAGATAAAAGGTCAACAGCAACAGCATAAGTCCCTTCCTGGTTTTGAGCTTCTTTGCAAAGACAACCTCACCACTATCCACTTTCCATCTTATGGTGATTTGGTAGTGAAGTCCATTTCCTATGACACCAAAAACATTCACCTCCTTGACCCCAAAAACTGTGCCCATCATGTCTTTCTCAACCTCAATCTCTCCCTCACACCGTTCCACTATTTTTATGTTCTGAAAAACTACACATACCTCAATTGCTCCACCACCCTTCCACATCCTCTCGTGGAGGTTCCGTGTTTAAGTGCTTCAAGCTATCATGTATACACAGTTGACCCTGCAGTGCCTGTGCCGGGTTCATGTGATGGAGTCAAAACCGTAGCCATTCCTTTTGCATATAGCCCTTATCTCTCAGACAAAAGTCTTGGTCTTAGATTAACATGGCACTTGCGTGAACCTCTAGACAACGAAGCAGCAGTGAACCGGACTAGAGGTTCCTACAAATCGCGTAATATAGTTATAGGCTCTAGCATCTGTGTTTTCGTGATGGCCATGCTATTGCTTATAAGCATGAAGGTTCGTGGTGCCACGAGGAACCTCCATCAGAAAGAAGGACAGTTATTGCAGAGCTAAACGGATTTCTAGCTAACAGTAATAGTAATAGATAGACTTTTTCAACAACATTCCTATAGTTATGTAATACTTTCTACTTTTTTTTTCCCTCTCTTCCTGTAATATGACGTTACGGGTTACATTTTCCACTCAAATATATTTTCTTATCTCACGTAACCTAGTGAGTATATGAATATTGAATACAGTCATTTTGACTCTGTACGAGTTGTGTGATACTTAGTTACTTCATGTTTGGTACTGAATTAAAAAAAATTGTTCTTGTTATATAATATTTCTAGCGAGGAAAAGCAGACAAGTAATGTTTTTTCGCATAT
Coding sequences of Glyma01g41560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g41560.2 sequence type=CDS gene model=Glyma01g41560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGCATTCATCTTCCTTTTCCTCTTGTGTGTTTTCTGCTTCCAAAGTAAGGTGACCTATGCTACAAGGTGTGGAGATGCAGGCCCTGAAATCCACTATCCATATCAGATAAAAGGTCAACAGCAACAGCATAAGTCCCTTCCTGGTTTTGAGCTTCTTTGCAAAGACAACCTCACCACTATCCACTTTCCATCTTATGGTGATTTGGTAGTGAAGTCCATTTCCTATGACACCAAAAACATTCACCTCCTTGACCCCAAAAACTGTGCCCATCATGTCTTTCTCAACCTCAATCTCTCCCTCACACCGTTCCACTATTTTTATGTTCTGAAAAACTACACATACCTCAATTGCTCCACCACCCTTCCACATCCTCTCGTGGAGGTTCCGTGTTTAAGTGCTTCAAGCTATCATGTATACACAGTTGACCCTGCAGTGCCTGTGCCGGGTTCATGTGATGGAGTCAAAACCGTAGCCATTCCTTTTGCATATAGCCCTTATCTCTCAGACAAAAGTCTTGGTCTTAGATTAACATGGCACTTGCGTGAACCTCTAGACAACGAAGCAGCAGTGAACCGGACTAGAGGTTCCTACAAATCGCGTAATATAGTTATAGGCTCTAGCATCTGTGTTTTCGTGATGGCCATGCTATTGCTTATAAGCATGAAGGTTCGTGGTGCCACGAGGAACCTCCATCAGAAAGAAGGACAGTTATTGCAGAGCTAA
>Glyma01g41560.3 sequence type=CDS gene model=Glyma01g41560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTGCATTCATCTTCCTTTTCCTCTTGTGTGTTTTCTGCTTCCAAAGTAAGGTGACCTATGCTACAAGGTGTGGAGATGCAGGCCCTGAAATCCACTATCCATATCAGATAAAAGGTCAACAGCAACAGCATAAGTCCCTTCCTGGTTTTGAGCTTCTTTGCAAAGACAACCTCACCACTATCCACTTTCCATCTTATGGTGATTTGGTAGTGAAGTCCATTTCCTATGACACCAAAAACATTCACCTCCTTGACCCCAAAAACTGTGCCCATCATGTCTTTCTCAACCTCAATCTCTCCCTCACACCGTTCCACTATTTTTATGTTCTGAAAAACTACACATACCTCAATTGCTCCACCACCCTTCCACATCCTCTCGTGGAGGTTCCGTGTTTAAGTGCTTCAAGCTATCATGTATACACAGTTGACCCTGCAGTGCCTGTGCCGGGTTCATGTGATGGAGTCAAAACCGTAGCCATTCCTTTTGCATATAGCCCTTATCTCTCAGACAAAAGTCTTGGTCTTAGATTAACATGGCACTTGCGTGAACCTCTAGACAACGAAGCAGCAGTGAACCGGACTAGAGGTTCCTACAAATCGCGTAATATAGTTATAGGCTCTAGCATCTGTGTTTTCGTGATGGCCATGCTATTGCTTATAAGCATGAAGGTTCGTGGTGCCACGAGGAACCTCCATCAGAAAGAAGGACAGTTATTGCAGAGCTAA
Predicted protein sequences of Glyma01g41560
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g41560.2 sequence type=predicted peptide gene model=Glyma01g41560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGAFIFLFLLCVFCFQSKVTYATRCGDAGPEIHYPYQIKGQQQQHKSLPGFELLCKDNLTTIHFPSYGDLVVKSISYDTKNIHLLDPKNCAHHVFLNLNLSLTPFHYFYVLKNYTYLNCSTTLPHPLVEVPCLSASSYHVYTVDPAVPVPGSCDGVKTVAIPFAYSPYLSDKSLGLRLTWHLREPLDNEAAVNRTRGSYKSRNIVIGSSICVFVMAMLLLISMKVRGATRNLHQKEGQLLQS*
>Glyma01g41560.3 sequence type=predicted peptide gene model=Glyma01g41560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGAFIFLFLLCVFCFQSKVTYATRCGDAGPEIHYPYQIKGQQQQHKSLPGFELLCKDNLTTIHFPSYGDLVVKSISYDTKNIHLLDPKNCAHHVFLNLNLSLTPFHYFYVLKNYTYLNCSTTLPHPLVEVPCLSASSYHVYTVDPAVPVPGSCDGVKTVAIPFAYSPYLSDKSLGLRLTWHLREPLDNEAAVNRTRGSYKSRNIVIGSSICVFVMAMLLLISMKVRGATRNLHQKEGQLLQS*