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Report for Sequence Feature Glyma01g41560

Feature Type:gene_model
Chromosome:Gm01
Start:53022511
stop:53024733
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53110AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr5:21529022-21533008 FORWARD LENGTH=382 SoyBaseE_val: 1.00E-17ISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
UniRef100_G7JXF0UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING-H2 finger protein ATL1E n=1 Tax=Medicago truncatula RepID=G7JXF0_MEDTR SoyBaseE_val: 3.00E-91ISS
UniRef100_UPI00023379E4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023379E4 related cluster n=1 Tax=unknown RepID=UPI00023379E4 SoyBaseE_val: 5.00E-179ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41560 not represented in the dataset

Glyma01g41560 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g03870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g207100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g41560.3   sequence type=transcript   gene model=Glyma01g41560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGTCGTTAAGTGCTGATATTAATTTTGCTTAAGTCCTGATTTTCCCCATTCTTTCTTCTTCAAACAGGCACTCCTCGAGTTCTTCCTTCTTCCTTACAAATCCCTTCATTATGGGCATAAACTCCAATATATCAGTTCTATATAGCAGTTGTTACTCAAAATGAAGGACCTGTTCATTTGCATATTTTGCTCATTCAAAATCATTAAAACGATTTAGGTTTCATAGTGAATGATAAGTTAGCGGAATTCAACGACTTTGGATTGTTAACATCCATACATCTTTCTCCTAGGAAGCAAACACAACACTCCACTGATCGTGCCCTGGGTTCTTACCATAATTTTCTTTCCTTTCTAATTTCTATATTTTTTATTTTATTATTAATTGGATATTATTTTCCTCAGCTGATTAGTATACATGGTAGCCAATTTTTTGTGAATTACATATTTTTTTCCTAATTTGGACTAAAGTCTGAAACCGCTGACAAAGATTAGTGTCCAAGTCAAGCAAATTAGTCAGAGAAATTTAGTTAGGATAGTGGAAGAGGAAGACATAAGTGTTGGTGGCAAGCCCCTTGGTGCAAGGCGCTGAATTGGTCAACATTCAAGTTCATTCAGGCACTTAGTGTGACTTTTGAAAAGTTTATTCCATCTGTTTGTTCCTTTACAAAAAATTGCTTATGTTACCCCCCATCAGACTTCTACTGCTTTATGACCCGAAGCTTGTTGAAGCCTGCAAGAAACCAAGTCTTTTAATGCTTTTTTGCAAAATTCTTCTAGTCTAGGGCGGTTCAAGTTTCTTAACAAATACTAGATTCATTTGTTTATTCTTGGTCTTCGTCCCCCACCAATAAGTCTCAAGTGATGGGTGCATTCATCTTCCTTTTCCTCTTGTGTGTTTTCTGCTTCCAAAGTAAGGTGACCTATGCTACAAGGTGTGGAGATGCAGGCCCTGAAATCCACTATCCATATCAGATAAAAGGTCAACAGCAACAGCATAAGTCCCTTCCTGGTTTTGAGCTTCTTTGCAAAGACAACCTCACCACTATCCACTTTCCATCTTATGGTGATTTGGTAGTGAAGTCCATTTCCTATGACACCAAAAACATTCACCTCCTTGACCCCAAAAACTGTGCCCATCATGTCTTTCTCAACCTCAATCTCTCCCTCACACCGTTCCACTATTTTTATGTTCTGAAAAACTACACATACCTCAATTGCTCCACCACCCTTCCACATCCTCTCGTGGAGGTTCCGTGTTTAAGTGCTTCAAGCTATCATGTATACACAGTTGACCCTGCAGTGCCTGTGCCGGGTTCATGTGATGGAGTCAAAACCGTAGCCATTCCTTTTGCATATAGCCCTTATCTCTCAGACAAAAGTCTTGGTCTTAGATTAACATGGCACTTGCGTGAACCTCTAGACAACGAAGCAGCAGTGAACCGGACTAGAGGTTCCTACAAATCGCGTAATATAGTTATAGGCTCTAGCATCTGTGTTTTCGTGATGGCCATGCTATTGCTTATAAGCATGAAGGTTCGTGGTGCCACGAGGAACCTCCATCAGAAAGAAGGACAGTTATTGCAGAGCTAAACGGATTTCTAGCTAACAGTAATAGTAATAGATAGACTTTTTCAACAACATTCCTATAGTTATGTAATACTTTCTACTTTTTTTTTCCCTCTCTTCCTGTAATATGACGTTACGGGTTACATTTTCCACTCAAATATATTTTCTTATCTCACGTAACCTAGTGAGTATATGAATATTGAATACAGTCATTTTGACTCTGTACGAGTTGTGTGATACTTAGTTACTTCATGTTTGGTACTGAATTAAAAAAAATTGTTCTTGTTATATAATATTTCTAGCGAGGAAAAGCAGACAAGTAATGTTTTTTCGCATAT

>Glyma01g41560.2   sequence type=CDS   gene model=Glyma01g41560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCATTCATCTTCCTTTTCCTCTTGTGTGTTTTCTGCTTCCAAAGTAAGGTGACCTATGCTACAAGGTGTGGAGATGCAGGCCCTGAAATCCACTATCCATATCAGATAAAAGGTCAACAGCAACAGCATAAGTCCCTTCCTGGTTTTGAGCTTCTTTGCAAAGACAACCTCACCACTATCCACTTTCCATCTTATGGTGATTTGGTAGTGAAGTCCATTTCCTATGACACCAAAAACATTCACCTCCTTGACCCCAAAAACTGTGCCCATCATGTCTTTCTCAACCTCAATCTCTCCCTCACACCGTTCCACTATTTTTATGTTCTGAAAAACTACACATACCTCAATTGCTCCACCACCCTTCCACATCCTCTCGTGGAGGTTCCGTGTTTAAGTGCTTCAAGCTATCATGTATACACAGTTGACCCTGCAGTGCCTGTGCCGGGTTCATGTGATGGAGTCAAAACCGTAGCCATTCCTTTTGCATATAGCCCTTATCTCTCAGACAAAAGTCTTGGTCTTAGATTAACATGGCACTTGCGTGAACCTCTAGACAACGAAGCAGCAGTGAACCGGACTAGAGGTTCCTACAAATCGCGTAATATAGTTATAGGCTCTAGCATCTGTGTTTTCGTGATGGCCATGCTATTGCTTATAAGCATGAAGGTTCGTGGTGCCACGAGGAACCTCCATCAGAAAGAAGGACAGTTATTGCAGAGCTAA

>Glyma01g41560.3   sequence type=CDS   gene model=Glyma01g41560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCATTCATCTTCCTTTTCCTCTTGTGTGTTTTCTGCTTCCAAAGTAAGGTGACCTATGCTACAAGGTGTGGAGATGCAGGCCCTGAAATCCACTATCCATATCAGATAAAAGGTCAACAGCAACAGCATAAGTCCCTTCCTGGTTTTGAGCTTCTTTGCAAAGACAACCTCACCACTATCCACTTTCCATCTTATGGTGATTTGGTAGTGAAGTCCATTTCCTATGACACCAAAAACATTCACCTCCTTGACCCCAAAAACTGTGCCCATCATGTCTTTCTCAACCTCAATCTCTCCCTCACACCGTTCCACTATTTTTATGTTCTGAAAAACTACACATACCTCAATTGCTCCACCACCCTTCCACATCCTCTCGTGGAGGTTCCGTGTTTAAGTGCTTCAAGCTATCATGTATACACAGTTGACCCTGCAGTGCCTGTGCCGGGTTCATGTGATGGAGTCAAAACCGTAGCCATTCCTTTTGCATATAGCCCTTATCTCTCAGACAAAAGTCTTGGTCTTAGATTAACATGGCACTTGCGTGAACCTCTAGACAACGAAGCAGCAGTGAACCGGACTAGAGGTTCCTACAAATCGCGTAATATAGTTATAGGCTCTAGCATCTGTGTTTTCGTGATGGCCATGCTATTGCTTATAAGCATGAAGGTTCGTGGTGCCACGAGGAACCTCCATCAGAAAGAAGGACAGTTATTGCAGAGCTAA

>Glyma01g41560.2   sequence type=predicted peptide   gene model=Glyma01g41560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAFIFLFLLCVFCFQSKVTYATRCGDAGPEIHYPYQIKGQQQQHKSLPGFELLCKDNLTTIHFPSYGDLVVKSISYDTKNIHLLDPKNCAHHVFLNLNLSLTPFHYFYVLKNYTYLNCSTTLPHPLVEVPCLSASSYHVYTVDPAVPVPGSCDGVKTVAIPFAYSPYLSDKSLGLRLTWHLREPLDNEAAVNRTRGSYKSRNIVIGSSICVFVMAMLLLISMKVRGATRNLHQKEGQLLQS*

>Glyma01g41560.3   sequence type=predicted peptide   gene model=Glyma01g41560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAFIFLFLLCVFCFQSKVTYATRCGDAGPEIHYPYQIKGQQQQHKSLPGFELLCKDNLTTIHFPSYGDLVVKSISYDTKNIHLLDPKNCAHHVFLNLNLSLTPFHYFYVLKNYTYLNCSTTLPHPLVEVPCLSASSYHVYTVDPAVPVPGSCDGVKTVAIPFAYSPYLSDKSLGLRLTWHLREPLDNEAAVNRTRGSYKSRNIVIGSSICVFVMAMLLLISMKVRGATRNLHQKEGQLLQS*







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