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Report for Sequence Feature Glyma01g41542

Feature Type:gene_model
Chromosome:Gm01
Start:53013664
stop:53016687
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g41542
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47240AT Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 8 | chr5:19183806-19185467 FORWARD LENGTH=369 SoyBaseE_val: 8.00E-28ISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
PTHR13994Panther NUDIX HYDROLASE RELATED JGI ISS
PTHR13994:SF2Panther MUTT DOMAIN PROTEIN JGI ISS
UniRef100_B9SZQ2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mutt domain protein, putative n=1 Tax=Ricinus communis RepID=B9SZQ2_RICCO SoyBaseE_val: 2.00E-32ISS
UniRef100_UPI00023379E3UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023379E3 related cluster n=1 Tax=unknown RepID=UPI00023379E3 SoyBaseE_val: 1.00E-49ISS

Expression Patterns of Glyma01g41542
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41542 not represented in the dataset
Glyma01g41542 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g41542 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g206900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g41542
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g41542
>Glyma01g41542.1   sequence type=CDS   gene model=Glyma01g41542   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACCCGTCTCCGTGTGATTGGTGATCCCATGAATGGAGTTCAACGGTTAAGACCCCTGTCAGCTGAGACCATTGTTGATGATCCTGAAATTGAAGCTGCAAAGTGGATGCCTCAAGTTGAGTTTGTAGAACAACCATTTATCCAAGAAGATTCTATGTTCAAGAAGATAATAGATATCTGCATGGCTTGTCTCGAGAAGCATTATTGTGGCCTAACTTCTCATCAAATGGTTTCAAAATGTGATGGCAAGTTATCTTCCCTGTACTATAATTTCATCAACATGGAAGATATATATCAACTGTATTGGCAGTTAAATTAA
Predicted protein sequences of Glyma01g41542
>Glyma01g41542.1   sequence type=predicted peptide   gene model=Glyma01g41542   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTRLRVIGDPMNGVQRLRPLSAETIVDDPEIEAAKWMPQVEFVEQPFIQEDSMFKKIIDICMACLEKHYCGLTSHQMVSKCDGKLSSLYYNFINMEDIYQLYWQLN*






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