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Report for Sequence Feature Glyma01g41534

Feature Type:gene_model
Chromosome:Gm01
Start:53009591
stop:53011422
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G47240AT Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 8 | chr5:19183806-19185467 FORWARD LENGTH=369 SoyBaseE_val: 2.00E-80ISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
PTHR13994Panther NUDIX HYDROLASE RELATED JGI ISS
PTHR13994:SF2Panther MUTT DOMAIN PROTEIN JGI ISS
PF00293PFAM NUDIX domain JGI ISS
UniRef100_G7JHP2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nudix hydrolase n=2 Tax=Medicago truncatula RepID=G7JHP2_MEDTR SoyBaseE_val: 6.00E-94ISS
UniRef100_UPI00023379E3UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023379E3 related cluster n=1 Tax=unknown RepID=UPI00023379E3 SoyBaseE_val: 3.00E-144ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41534 not represented in the dataset

Glyma01g41534 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g03890 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g206800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g41534.1   sequence type=CDS   gene model=Glyma01g41534   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCTGAAATCGTTCTCTTTCAATTCTGAGATGGTACTCGTGGGAAGAACAAGAACCTGTCCCGCTTTGCTCTCAAATTCCAGCAGCGTTAGATTCTGTAGTCAACTCAACTGTTTCGGTGCTGTCACCAGTTCAGTTGGTCCAGATAATCTTGCGGCAGAAACGAGTTTTCATCATATTAATGGCACCAATGGCTCAATTTCTAGCTTGTGTTCCAGAAATCTGAGAGTACTTGATGCCTCTGATGATGTGTATGAGGGTGTTGTAATTGATTCAGACCGGTTACCAGACAACCCTTCTACCTTCGCAGCTAATTTGCGTTTTTCTCTTCATCATTGGAAAAAGGTGGGGAAGAAGGGGATTTGGCTTAGATTGCCATCAGAGCAATCTGATTTTGTTCCAATAGCTATTAAGGAAGGCTTTCGATACCACCACGCGGAGCCAGGGTATGTGATGTTAACATACTGGATTCCTGAAGGACCTTTCATGCTTCCAGCCAATGCATCACACCAAGTAGGAGTTGGGGGATTTGTCATCAGTGGCAGCAATGAGGTGCTTGTAGTCCAAGAGAAGCAATGTGCTCCTGCAAATTGTGGTCTATGGAAAATACCAACTCGATTCGTTCTTCAGTCAGAGGAGCTATATGCTGGAGCCATAAGAGAAGTGAAGGAAGAAACTGGGATTGATACCGAGTTCGTTGAAGTCATAGCATTCAGGTAA

>Glyma01g41534.1   sequence type=predicted peptide   gene model=Glyma01g41534   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELKSFSFNSEMVLVGRTRTCPALLSNSSSVRFCSQLNCFGAVTSSVGPDNLAAETSFHHINGTNGSISSLCSRNLRVLDASDDVYEGVVIDSDRLPDNPSTFAANLRFSLHHWKKVGKKGIWLRLPSEQSDFVPIAIKEGFRYHHAEPGYVMLTYWIPEGPFMLPANASHQVGVGGFVISGSNEVLVVQEKQCAPANCGLWKIPTRFVLQSEELYAGAIREVKEETGIDTEFVEVIAFR*







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