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Report for Sequence Feature Glyma01g41480

Feature Type:gene_model
Chromosome:Gm01
Start:52974072
stop:52977575
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17510AT Annotation by Michelle Graham. TAIR10: ubiquitin C-terminal hydrolase 3 | chr4:9767114-9768648 REVERSE LENGTH=234 SoyBaseE_val: 5.00E-121ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004221GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity SoyBaseN/AISS
KOG1415 KOG Ubiquitin C-terminal hydrolase UCHL1 JGI ISS
PTHR10589Panther PROTEASE FAMILY C12 UBIQUITIN CARBOXY-TERMINAL HYDROLASE JGI ISS
PTHR10589:SF17Panther UBIQUITIN CARBOXYL-TERMINAL HYDROLASE JGI ISS
PF01088PFAM Ubiquitin carboxyl-terminal hydrolase, family 1 JGI ISS
UniRef100_G7JHN2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carboxyl-terminal hydrolase isozyme L3 n=1 Tax=Medicago truncatula RepID=G7JHN2_MEDTR SoyBaseE_val: 4.00E-140ISS
UniRef100_I1J9S6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9S6_SOYBN SoyBaseE_val: 1.00E-167ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41480 not represented in the dataset

Glyma01g41480 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g206200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g41480.2   sequence type=CDS   gene model=Glyma01g41480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTATAAGCCTGGCCAATGGGCCCACAAAGGCCCAAGGCAAGAGTATAAAATGAGAGCAGTGACAAGTGCAAAGGTATTGTGGAAGAACAAAGCAATGGCTTCAGCTAAAAGGTGGCTTCCGCTCGAAGCTAATCCTGACGTCATGAATCAGTTCCTTTGGGGGCTTGGACTTCGAGAGGATGAGGCAGAATGCTGTGACGTTTATGGCTTAGATGAAGAGCTTCTGGAAATGGTTCCAAAGCCCGTTCTTGCCGTGCTTTTTCTTTATCCCATAACCACCCAGAGTGAAGAAGAGAGGTTGCAGCAGGAAAATGAAAAAAAGGAATATAACAGTAGAGTCTATTTTATGAAGCAAACTGTGGGTAATGCTTGTGGGACAATTGGGCTGCTTCATGCTCTTGGTAACTTGACTTCTGAAGTCAAGCTCGTTGAGGGGTCGTTCTTTGATAACTTTTTTAAATCTACTGCAAGCTTGGATCCATTGCAGCGTGCAACATTTCTTGAGAATGACAAAGAAATGGAAGTGGCTCATTTGGTGGCAGCAACTGCTGGTGATACAGAGGCATCAGACAATGCAACTGCACATTTCATATGCTTTGCTTGTGTGGATGATGAACTTTATGAGCTTGATGGAAGAAAGTCAGTGCCAATATCTCACGGTCCATCATCACCAAGTACTTTGTTAAGGGATGCAGCTAAAGCAATACAGAGCATGATCCAGAAAAATCCAGACTCCTTCAACTTCAATGTCATTGCCTTGTGTAAGAAATCCGGGTAG

>Glyma01g41480.2   sequence type=predicted peptide   gene model=Glyma01g41480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYKPGQWAHKGPRQEYKMRAVTSAKVLWKNKAMASAKRWLPLEANPDVMNQFLWGLGLREDEAECCDVYGLDEELLEMVPKPVLAVLFLYPITTQSEEERLQQENEKKEYNSRVYFMKQTVGNACGTIGLLHALGNLTSEVKLVEGSFFDNFFKSTASLDPLQRATFLENDKEMEVAHLVAATAGDTEASDNATAHFICFACVDDELYELDGRKSVPISHGPSSPSTLLRDAAKAIQSMIQKNPDSFNFNVIALCKKSG*







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