SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G17510 | AT | Annotation by Michelle Graham. TAIR10: ubiquitin C-terminal hydrolase 3 | chr4:9767114-9768648 REVERSE LENGTH=234 | SoyBase | E_val: 5.00E-121 | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004221 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity | SoyBase | N/A | ISS |
| KOG1415 | KOG | Ubiquitin C-terminal hydrolase UCHL1 | JGI | ISS | |
| PTHR10589 | Panther | PROTEASE FAMILY C12 UBIQUITIN CARBOXY-TERMINAL HYDROLASE | JGI | ISS | |
| PTHR10589:SF17 | Panther | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE | JGI | ISS | |
| PF01088 | PFAM | Ubiquitin carboxyl-terminal hydrolase, family 1 | JGI | ISS | |
| UniRef100_G7JHN2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carboxyl-terminal hydrolase isozyme L3 n=1 Tax=Medicago truncatula RepID=G7JHN2_MEDTR | SoyBase | E_val: 4.00E-140 | ISS |
| UniRef100_I1J9S6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9S6_SOYBN | SoyBase | E_val: 1.00E-167 | ISS |
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Glyma01g41480 not represented in the dataset |
Glyma01g41480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g206200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g41480.2 sequence type=CDS gene model=Glyma01g41480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTATAAGCCTGGCCAATGGGCCCACAAAGGCCCAAGGCAAGAGTATAAAATGAGAGCAGTGACAAGTGCAAAGGTATTGTGGAAGAACAAAGCAATGGCTTCAGCTAAAAGGTGGCTTCCGCTCGAAGCTAATCCTGACGTCATGAATCAGTTCCTTTGGGGGCTTGGACTTCGAGAGGATGAGGCAGAATGCTGTGACGTTTATGGCTTAGATGAAGAGCTTCTGGAAATGGTTCCAAAGCCCGTTCTTGCCGTGCTTTTTCTTTATCCCATAACCACCCAGAGTGAAGAAGAGAGGTTGCAGCAGGAAAATGAAAAAAAGGAATATAACAGTAGAGTCTATTTTATGAAGCAAACTGTGGGTAATGCTTGTGGGACAATTGGGCTGCTTCATGCTCTTGGTAACTTGACTTCTGAAGTCAAGCTCGTTGAGGGGTCGTTCTTTGATAACTTTTTTAAATCTACTGCAAGCTTGGATCCATTGCAGCGTGCAACATTTCTTGAGAATGACAAAGAAATGGAAGTGGCTCATTTGGTGGCAGCAACTGCTGGTGATACAGAGGCATCAGACAATGCAACTGCACATTTCATATGCTTTGCTTGTGTGGATGATGAACTTTATGAGCTTGATGGAAGAAAGTCAGTGCCAATATCTCACGGTCCATCATCACCAAGTACTTTGTTAAGGGATGCAGCTAAAGCAATACAGAGCATGATCCAGAAAAATCCAGACTCCTTCAACTTCAATGTCATTGCCTTGTGTAAGAAATCCGGGTAG
>Glyma01g41480.2 sequence type=predicted peptide gene model=Glyma01g41480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAYKPGQWAHKGPRQEYKMRAVTSAKVLWKNKAMASAKRWLPLEANPDVMNQFLWGLGLREDEAECCDVYGLDEELLEMVPKPVLAVLFLYPITTQSEEERLQQENEKKEYNSRVYFMKQTVGNACGTIGLLHALGNLTSEVKLVEGSFFDNFFKSTASLDPLQRATFLENDKEMEVAHLVAATAGDTEASDNATAHFICFACVDDELYELDGRKSVPISHGPSSPSTLLRDAAKAIQSMIQKNPDSFNFNVIALCKKSG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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