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Report for Sequence Feature Glyma01g41401

Feature Type:gene_model
Chromosome:Gm01
Start:52906368
stop:52908690
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G17560AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L19 family protein | chr4:9780343-9781752 FORWARD LENGTH=225 SoyBaseE_val: 4.00E-71ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0042254GO-bp Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis SoyBaseN/AISS
GO:0051607GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to virus SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
PTHR15680Panther 50S RIBOSOMAL PROTEIN L19 JGI ISS
PTHR15680:SF2Panther 50S RIBOSOMAL PROTEIN L19 JGI ISS
PF01245PFAM Ribosomal protein L19 JGI ISS
UniRef100_B7FKU8UniRef Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L19 n=1 Tax=Medicago truncatula RepID=B7FKU8_MEDTR SoyBaseE_val: 8.00E-96ISS
UniRef100_I1J9R5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J9R5_SOYBN SoyBaseE_val: 2.00E-150ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41401 not represented in the dataset

Glyma01g41401 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma11g04020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g205400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma01g41401.2   sequence type=transcript   gene model=Glyma01g41401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAACATGATGGGCTGAATAGGGCCTTACATTTTTTCCGGCCAGGCCCAAGCCAGATAAAGGAAAAAAGAAGAGTTGTAGTTGACACGTGTGGAACGGATAGAGAAACAGATAAGGGCGCTCTCCGTACCATCTTCCTAATCCTCCTTACATTTGCAGTGTTCCCATGTCTCCTACCCACTGAAGTCGAACCCCTATTTTTCCTCTCCCTAATGGCTTCTCAAGTTCTTCTTCAGGCACTGTTTGCCCCCAAGCTAAGTTTCCCTTCTTCTTCTCGTAACGTGGCGTTAATTTCTAGGGTTCCTTCCACCCCAATTTCATGGCGTTGCACTCCCCTCATTGCTAAGCCTAGTTTCGTAGTGAGAGCTGACACCAACCTCGATGGCGGTGGTGAAGCCACCGAGGATGTTCCTTCGGATAATGCTGAAAAAGTTTCGGAAGGCGAAGCAGAACAAGTTTCGGATTCTGAAGCTCCGAAATCGCCTAGAAAACCCCGAGTCAAACTCGGAGACATTATGGGGATATTGAATCAGAGGGCAATTGAGGCATCCGAGAAGCAAAGACCAACTCCAGACATTAGGACTGGGGATATTGTCGAAATCAAATTGGAGGTTCCTGAGAACAAGCGTAGGTTGTCCATTTATAAAGGGATTGTCATCTCAAAACAAAATGCTGGTATTCACACGACTATTCGAATCCGAAGAATCATTGCCGGCACTGGGGTTGAGATAGTCTTCCCAGTTTACTCACCAAACATCAAAGAAATCAAAGTGGTAAGTCACCGTAAGGTCAGGAGGGCAAGATTGTACTATCTGAGAGACAAGCTTCCGAGATTCTCCACTTTCAAGTGATACTCGGATACCCCACCTTTCCTCACGTTATTCGTCGAACTAGTCTGCTGATCCAGGATAAGTGCTGCGGAGCTTTAATTTTTTTAATTTCAATTTGTTCTGTTGTAGAATACATCATTTTTCTTCCCCTTTGTGTATCTTCCCTTAAATCGAAACAAGTGTACTGAACCTTGATAGTATTGAGAAATTTGAAGTGTTTCTTCTGCATCACCATATATAGTTTATTCGGTAGAAATCGAAGCTATGAAGAAAATATTATTTTAGTATTAAAATGTAGGATTATAACAGTAAAGGTTTAAAATCTAGAATCATA

>Glyma01g41401.1   sequence type=CDS   gene model=Glyma01g41401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCAAGTTCTTCTTCAGCAGGCACTGTTTGCCCCCAAGCTAAGTTTCCCTTCTTCTTCTCGTAACGTGGCGTTAATTTCTAGGGTTCCTTCCACCCCAATTTCATGGCGTTGCACTCCCCTCATTGCTAAGCCTAGTTTCGTAGTGAGAGCTGACACCAACCTCGATGGCGGTGGTGAAGCCACCGAGGATGTTCCTTCGGATAATGCTGAAAAAGTTTCGGAAGGCGAAGCAGAACAAGTTTCGGATTCTGAAGCTCCGAAATCGCCTAGAAAACCCCGAGTCAAACTCGGAGACATTATGGGGATATTGAATCAGAGGGCAATTGAGGCATCCGAGAAGCAAAGACCAACTCCAGACATTAGGACTGGGGATATTGTCGAAATCAAATTGGAGGTTCCTGAGAACAAGCGTAGGTTGTCCATTTATAAAGGGATTGTCATCTCAAAACAAAATGCTGGTATTCACACGACTATTCGAATCCGAAGAATCATTGCCGGCACTGGGGTTGAGATAGTCTTCCCAGTTTACTCACCAAACATCAAAGAAATCAAAGTGGTAAGTCACCGTAAGGTCAGGAGGGCAAGATTGTACTATCTGAGAGACAAGCTTCCGAGATTCTCCACTTTCAAGTGA

>Glyma01g41401.2   sequence type=CDS   gene model=Glyma01g41401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCAAGTTCTTCTTCAGGCACTGTTTGCCCCCAAGCTAAGTTTCCCTTCTTCTTCTCGTAACGTGGCGTTAATTTCTAGGGTTCCTTCCACCCCAATTTCATGGCGTTGCACTCCCCTCATTGCTAAGCCTAGTTTCGTAGTGAGAGCTGACACCAACCTCGATGGCGGTGGTGAAGCCACCGAGGATGTTCCTTCGGATAATGCTGAAAAAGTTTCGGAAGGCGAAGCAGAACAAGTTTCGGATTCTGAAGCTCCGAAATCGCCTAGAAAACCCCGAGTCAAACTCGGAGACATTATGGGGATATTGAATCAGAGGGCAATTGAGGCATCCGAGAAGCAAAGACCAACTCCAGACATTAGGACTGGGGATATTGTCGAAATCAAATTGGAGGTTCCTGAGAACAAGCGTAGGTTGTCCATTTATAAAGGGATTGTCATCTCAAAACAAAATGCTGGTATTCACACGACTATTCGAATCCGAAGAATCATTGCCGGCACTGGGGTTGAGATAGTCTTCCCAGTTTACTCACCAAACATCAAAGAAATCAAAGTGGTAAGTCACCGTAAGGTCAGGAGGGCAAGATTGTACTATCTGAGAGACAAGCTTCCGAGATTCTCCACTTTCAAGTGA

>Glyma01g41401.1   sequence type=predicted peptide   gene model=Glyma01g41401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASQVLLQQALFAPKLSFPSSSRNVALISRVPSTPISWRCTPLIAKPSFVVRADTNLDGGGEATEDVPSDNAEKVSEGEAEQVSDSEAPKSPRKPRVKLGDIMGILNQRAIEASEKQRPTPDIRTGDIVEIKLEVPENKRRLSIYKGIVISKQNAGIHTTIRIRRIIAGTGVEIVFPVYSPNIKEIKVVSHRKVRRARLYYLRDKLPRFSTFK*

>Glyma01g41401.2   sequence type=predicted peptide   gene model=Glyma01g41401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASQVLLQALFAPKLSFPSSSRNVALISRVPSTPISWRCTPLIAKPSFVVRADTNLDGGGEATEDVPSDNAEKVSEGEAEQVSDSEAPKSPRKPRVKLGDIMGILNQRAIEASEKQRPTPDIRTGDIVEIKLEVPENKRRLSIYKGIVISKQNAGIHTTIRIRRIIAGTGVEIVFPVYSPNIKEIKVVSHRKVRRARLYYLRDKLPRFSTFK*







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