Warning : Undefined variable $sxsome in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $sstart in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : Undefined variable $send in
/var/www/html/include/SeqFeatClass.php on line
665
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma01g41401): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1018
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1019
Warning : get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma01g41401): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in
/var/www/html/include/SeqFeatClass.php on line
1020
Warning : Trying to access array offset on false in
/var/www/html/include/SeqFeatClass.php on line
1021
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1025
Deprecated : preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in
/var/www/html/include/SeqFeatClass.php on line
1031
Report for Sequence Feature Glyma01g41401
Feature Type: gene_model
Chromosome: Gm01
Start: 52906368
stop: 52908690
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g41401
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G17560 AT
Annotation by Michelle Graham. TAIR10: Ribosomal protein L19 family protein | chr4:9780343-9781752 FORWARD LENGTH=225
SoyBase E_val: 4.00E-71 ISS
GO:0006412 GO-bp
Annotation by Michelle Graham. GO Biological Process: translation
SoyBase N/A ISS
GO:0010267 GO-bp
Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference
SoyBase N/A ISS
GO:0019288 GO-bp
Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
SoyBase N/A ISS
GO:0035196 GO-bp
Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA
SoyBase N/A ISS
GO:0042254 GO-bp
Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis
SoyBase N/A ISS
GO:0051607 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to virus
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005840 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: ribosome
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0003735 GO-mf
Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome
SoyBase N/A ISS
PTHR15680 Panther
50S RIBOSOMAL PROTEIN L19
JGI ISS
PTHR15680:SF2 Panther
50S RIBOSOMAL PROTEIN L19
JGI ISS
PF01245 PFAM
Ribosomal protein L19
JGI ISS
UniRef100_B7FKU8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: 50S ribosomal protein L19 n=1 Tax=Medicago truncatula RepID=B7FKU8_MEDTR
SoyBase E_val: 8.00E-96 ISS
UniRef100_I1J9R5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J9R5_SOYBN
SoyBase E_val: 2.00E-150 ISS
Expression Patterns of Glyma01g41401
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma01g41401
Paralog Evidence Comments
Glyma11g04020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g41401 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g205400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g41401
Transcripts of Glyma01g41401
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g41401.2 sequence type=transcript gene model=Glyma01g41401 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GGAACATGATGGGCTGAATAGGGCCTTACATTTTTTCCGGCCAGGCCCAAGCCAGATAAAGGAAAAAAGAAGAGTTGTAGTTGACACGTGTGGAACGGATAGAGAAACAGATAAGGGCGCTCTCCGTACCATCTTCCTAATCCTCCTTACATTTGCAGTGTTCCCATGTCTCCTACCCACTGAAGTCGAACCCCTATTTTTCCTCTCCCTAATGGCTTCTCAAGTTCTTCTTCAGGCACTGTTTGCCCCCAAGCTAAGTTTCCCTTCTTCTTCTCGTAACGTGGCGTTAATTTCTAGGGTTCCTTCCACCCCAATTTCATGGCGTTGCACTCCCCTCATTGCTAAGCCTAGTTTCGTAGTGAGAGCTGACACCAACCTCGATGGCGGTGGTGAAGCCACCGAGGATGTTCCTTCGGATAATGCTGAAAAAGTTTCGGAAGGCGAAGCAGAACAAGTTTCGGATTCTGAAGCTCCGAAATCGCCTAGAAAACCCCGAGTCAAACTCGGAGACATTATGGGGATATTGAATCAGAGGGCAATTGAGGCATCCGAGAAGCAAAGACCAACTCCAGACATTAGGACTGGGGATATTGTCGAAATCAAATTGGAGGTTCCTGAGAACAAGCGTAGGTTGTCCATTTATAAAGGGATTGTCATCTCAAAACAAAATGCTGGTATTCACACGACTATTCGAATCCGAAGAATCATTGCCGGCACTGGGGTTGAGATAGTCTTCCCAGTTTACTCACCAAACATCAAAGAAATCAAAGTGGTAAGTCACCGTAAGGTCAGGAGGGCAAGATTGTACTATCTGAGAGACAAGCTTCCGAGATTCTCCACTTTCAAGTGATACTCGGATACCCCACCTTTCCTCACGTTATTCGTCGAACTAGTCTGCTGATCCAGGATAAGTGCTGCGGAGCTTTAATTTTTTTAATTTCAATTTGTTCTGTTGTAGAATACATCATTTTTCTTCCCCTTTGTGTATCTTCCCTTAAATCGAAACAAGTGTACTGAACCTTGATAGTATTGAGAAATTTGAAGTGTTTCTTCTGCATCACCATATATAGTTTATTCGGTAGAAATCGAAGCTATGAAGAAAATATTATTTTAGTATTAAAATGTAGGATTATAACAGTAAAGGTTTAAAATCTAGAATCATA
Coding sequences of Glyma01g41401
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g41401.1 sequence type=CDS gene model=Glyma01g41401 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCTCAAGTTCTTCTTCAGCAGGCACTGTTTGCCCCCAAGCTAAGTTTCCCTTCTTCTTCTCGTAACGTGGCGTTAATTTCTAGGGTTCCTTCCACCCCAATTTCATGGCGTTGCACTCCCCTCATTGCTAAGCCTAGTTTCGTAGTGAGAGCTGACACCAACCTCGATGGCGGTGGTGAAGCCACCGAGGATGTTCCTTCGGATAATGCTGAAAAAGTTTCGGAAGGCGAAGCAGAACAAGTTTCGGATTCTGAAGCTCCGAAATCGCCTAGAAAACCCCGAGTCAAACTCGGAGACATTATGGGGATATTGAATCAGAGGGCAATTGAGGCATCCGAGAAGCAAAGACCAACTCCAGACATTAGGACTGGGGATATTGTCGAAATCAAATTGGAGGTTCCTGAGAACAAGCGTAGGTTGTCCATTTATAAAGGGATTGTCATCTCAAAACAAAATGCTGGTATTCACACGACTATTCGAATCCGAAGAATCATTGCCGGCACTGGGGTTGAGATAGTCTTCCCAGTTTACTCACCAAACATCAAAGAAATCAAAGTGGTAAGTCACCGTAAGGTCAGGAGGGCAAGATTGTACTATCTGAGAGACAAGCTTCCGAGATTCTCCACTTTCAAGTGA
>Glyma01g41401.2 sequence type=CDS gene model=Glyma01g41401 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCTCAAGTTCTTCTTCAGGCACTGTTTGCCCCCAAGCTAAGTTTCCCTTCTTCTTCTCGTAACGTGGCGTTAATTTCTAGGGTTCCTTCCACCCCAATTTCATGGCGTTGCACTCCCCTCATTGCTAAGCCTAGTTTCGTAGTGAGAGCTGACACCAACCTCGATGGCGGTGGTGAAGCCACCGAGGATGTTCCTTCGGATAATGCTGAAAAAGTTTCGGAAGGCGAAGCAGAACAAGTTTCGGATTCTGAAGCTCCGAAATCGCCTAGAAAACCCCGAGTCAAACTCGGAGACATTATGGGGATATTGAATCAGAGGGCAATTGAGGCATCCGAGAAGCAAAGACCAACTCCAGACATTAGGACTGGGGATATTGTCGAAATCAAATTGGAGGTTCCTGAGAACAAGCGTAGGTTGTCCATTTATAAAGGGATTGTCATCTCAAAACAAAATGCTGGTATTCACACGACTATTCGAATCCGAAGAATCATTGCCGGCACTGGGGTTGAGATAGTCTTCCCAGTTTACTCACCAAACATCAAAGAAATCAAAGTGGTAAGTCACCGTAAGGTCAGGAGGGCAAGATTGTACTATCTGAGAGACAAGCTTCCGAGATTCTCCACTTTCAAGTGA
Predicted protein sequences of Glyma01g41401
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g41401.1 sequence type=predicted peptide gene model=Glyma01g41401 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASQVLLQQALFAPKLSFPSSSRNVALISRVPSTPISWRCTPLIAKPSFVVRADTNLDGGGEATEDVPSDNAEKVSEGEAEQVSDSEAPKSPRKPRVKLGDIMGILNQRAIEASEKQRPTPDIRTGDIVEIKLEVPENKRRLSIYKGIVISKQNAGIHTTIRIRRIIAGTGVEIVFPVYSPNIKEIKVVSHRKVRRARLYYLRDKLPRFSTFK*
>Glyma01g41401.2 sequence type=predicted peptide gene model=Glyma01g41401 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASQVLLQALFAPKLSFPSSSRNVALISRVPSTPISWRCTPLIAKPSFVVRADTNLDGGGEATEDVPSDNAEKVSEGEAEQVSDSEAPKSPRKPRVKLGDIMGILNQRAIEASEKQRPTPDIRTGDIVEIKLEVPENKRRLSIYKGIVISKQNAGIHTTIRIRRIIAGTGVEIVFPVYSPNIKEIKVVSHRKVRRARLYYLRDKLPRFSTFK*