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Report for Sequence Feature Glyma01g41290

Feature Type:gene_model
Chromosome:Gm01
Start:52837391
stop:52839262
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g41290
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G74950AT Annotation by Michelle Graham. TAIR10: TIFY domain/Divergent CCT motif family protein | chr1:28148919-28150258 REVERSE LENGTH=249 SoyBaseE_val: 4.00E-23ISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009620GO-bp Annotation by Michelle Graham. GO Biological Process: response to fungus SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF06200PFAM tify domain JGI ISS
PF09425PFAM Divergent CCT motif JGI ISS
UniRef100_G7JYL9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein TIFY n=2 Tax=Medicago truncatula RepID=G7JYL9_MEDTR SoyBaseE_val: 1.00E-45ISS
UniRef100_I1J9Q4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1J9Q4_SOYBN SoyBaseE_val: 1.00E-142ISS

Expression Patterns of Glyma01g41290
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41290 not represented in the dataset
Glyma01g41290 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g41290
ParalogEvidenceComments
Glyma11g04130 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g41290 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g204400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g41290
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma01g41290
>Glyma01g41290.2   sequence type=transcript   gene model=Glyma01g41290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCGTGCTTTAATTCAGCGCCTTTATAGTTATAAAATGAAGATAAGGTTCAATAATCGATATCATATCATCACATCTTCTGCTCTCTCACGAGAAGAATACTACTAACTGTGTTGTAATACCTCAGTGGAGAACAAGATGAATCCATGGAACATGAGAACTTCCAAGTTACTCTCTCAACAACTTGCTTATCCTCCTTATCGCTTGGTAGAAGAGATTCCAAACATGGGAAATTCCAGTTGTGTGAGCAAGGAGCCAAGAGGTTCACAGATGACAATCTTTTATGGTGGCCAAGTTCTTGTCTTGGATGATATTCAAGCTGACAAAGCCAAGGACATCATGTCTTTTGCCGGCAAAGGAATGTCTCAAAACCAGAACGACTGTGCTTACACTTTCCCTGCTACAACTTCTGCTACTCCCAGTAGACCATTCCCTTTTCTTATGAATATCATTCCAACCACTGCCAATAATTCGGTTCAAGACCACCCTCAAACACCATCCAAACCTGTTATTTGTGATCTACCATTGGCTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGGTAAGTAGGCTGAGTCATGGAAATTAATACATCAACGAAAGTATACCTTCAAGTTTTCTTCAAAATTGGTTTTAGACCCTACATCCTAAAAACAATGATTTTGACCTTTGTATTTTCTAAAGTGTGGTGGATTTGGTATTTGGTATCTGCTTATGTCAAAATGAAGTACAGGGTCAAGTACAAAATCTACCACATTTCAGAACTACGAAAGCTAAAATTATCATTAATAAAAAAAATTAGGATTTAAACCTAATTTGGACTGAATATATGTTGAGTAACCTAAAATGCATTTTACCTTCTTTTTTAATTTACTGCTTTGGATCAAATCATTTATATATTATTATTAATGTTTGTGCAGAATTGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGCAGCCCTTAATAAGCTAGCTGAATCCAAGCCATGGCTCACCTTGGCACCTAAATCACCACAACAAGACGAATCTGATTCTGATAGCAGCTCCAGCTTTGTGTTATTTTAACTACTTTTGTTGGACAAGGTGAAGAAGAATTGTGGTGTCAACATTTTGATAAACGGAGTCAACATTTTATGGGCTTCTCTATAGCTCCGTGCTGAATTTTTGGGAGGGCTATGATCAATGCTGTTGCTCATGGCTTTACTATTATTATATTTAAGAGTGTAATTTAGGGCAAAAAAGTAATGTAAATGTAGTTTGGTTAGCATAGTTTTAGTAAAATATTGAAATCAGTTCTTCTCAATTCTCATTATCACGTGTATTATATGTAAAACTTCGGTTAGGATTATCTTTCTATATGCTAGCCTGTTTGTTATGGTTCAATTGGTTTCCTACTAGTATGTGAGACACATTTAGTCAAATTCCATCTTTCCAGCGAATTCAGTTTTTCCTCTCAAATTATCCTAGTTCATGCCATGCAGCAGAAAATGAGGTAGATTGAGCAGCAATAAGAATAACAAATTGAACTAATTGAAAGATATAATGTGCATGCAATTATTATGTAGCATTGTTATAAAAATATTGTTGAATCCTGTATTTTCTGTTTTGTGTTAGTTTCTGTTAGTTAGTTGGTTTTTCTATTATAGTTAGTTGGTTA
Coding sequences of Glyma01g41290
>Glyma01g41290.1   sequence type=CDS   gene model=Glyma01g41290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCCATGGAACATGAGAACTTCCAAGTTACTCTCTCAACAACTTGCTTATCCTCCTTATCGCTTGGTAGAAGAGATTCCAAACATGGGAAATTCCAGTTGTGTGAGCAAGGAGCCAAGAGGTTCACAGATGACAATCTTTTATGGTGGCCAAGTTCTTGTCTTGGATGATATTCAAGCTGACAAAGCCAAGGACATCATGTCTTTTGCCGGCAAAGGAATGTCTCAAAACCAGAACGACTGTGCTTACACTTTCCCTGCTACAACTTCTGCTACTCCCAGTAGACCATTCCCTTTTCTTATGAATATCATTCCAACCACTGCCAATAATTCGGTTCAAGACCACCCTCAAACACCATCCAAACCTGTTATTTGTGATCTACCATTGGCTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGAATTGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGCAGCCCTTAATAAGCTAGCTGAATCCAAGCCATGGCTCACCTTGGCACCTAAATCACCACAACAAGACGAATCTGATTCTGATAGCAGCTCCAGCTTTGTGTTATTTTAA

>Glyma01g41290.2   sequence type=CDS   gene model=Glyma01g41290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCCATGGAACATGAGAACTTCCAAGTTACTCTCTCAACAACTTGCTTATCCTCCTTATCGCTTGGTAGAAGAGATTCCAAACATGGGAAATTCCAGTTGTGTGAGCAAGGAGCCAAGAGGTTCACAGATGACAATCTTTTATGGTGGCCAAGTTCTTGTCTTGGATGATATTCAAGCTGACAAAGCCAAGGACATCATGTCTTTTGCCGGCAAAGGAATGTCTCAAAACCAGAACGACTGTGCTTACACTTTCCCTGCTACAACTTCTGCTACTCCCAGTAGACCATTCCCTTTTCTTATGAATATCATTCCAACCACTGCCAATAATTCGGTTCAAGACCACCCTCAAACACCATCCAAACCTGTTATTTGTGATCTACCATTGGCTAGGAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGGTAA
Predicted protein sequences of Glyma01g41290
>Glyma01g41290.1   sequence type=predicted peptide   gene model=Glyma01g41290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPWNMRTSKLLSQQLAYPPYRLVEEIPNMGNSSCVSKEPRGSQMTIFYGGQVLVLDDIQADKAKDIMSFAGKGMSQNQNDCAYTFPATTSATPSRPFPFLMNIIPTTANNSVQDHPQTPSKPVICDLPLARKASLHRFLEKRKDRIAARAPYQTSNHMAALNKLAESKPWLTLAPKSPQQDESDSDSSSSFVLF*

>Glyma01g41290.2   sequence type=predicted peptide   gene model=Glyma01g41290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPWNMRTSKLLSQQLAYPPYRLVEEIPNMGNSSCVSKEPRGSQMTIFYGGQVLVLDDIQADKAKDIMSFAGKGMSQNQNDCAYTFPATTSATPSRPFPFLMNIIPTTANNSVQDHPQTPSKPVICDLPLARKASLHRFLEKRKDR*






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