SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33950 | AT | Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr4:16272364-16274657 FORWARD LENGTH=362 | SoyBase | E_val: 0 | ISS |
| GO:0005985 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sucrose metabolic process | SoyBase | N/A | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0006636 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0006970 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to osmotic stress | SoyBase | N/A | ISS |
| GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010118 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal movement | SoyBase | N/A | ISS |
| GO:0010119 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement | SoyBase | N/A | ISS |
| GO:0019432 | GO-bp | Annotation by Michelle Graham. GO Biological Process: triglyceride biosynthetic process | SoyBase | N/A | ISS |
| GO:0040007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: growth | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:2000377 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of reactive oxygen species metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004713 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0009931 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium-dependent protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0583 | KOG | Serine/threonine protein kinase | JGI | ISS | |
| PTHR24343 | Panther | SERINE/THREONINE KINASE | JGI | ISS | |
| PTHR24343:SF58 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_I1E3I7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Membrane-associated/ABA-activated and calcium-independent protein kinase n=1 Tax=Glycine soja RepID=I1E3I7_GLYSO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J9Q1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9Q1_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma01g41260 not represented in the dataset |
Glyma01g41260 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g04150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g204200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g41260.2 sequence type=transcript gene model=Glyma01g41260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAATGTGTATATAAAACCAAAACAAAACCATATCCGTTTCCTTATTTTGGTCTTCTCTTGTATACAGTTTTGGTCTGTGATTTTGTTGCTTTGGTGAGAGTGGATATGGAAGAACGGTACGAGACTTTGAAGGAGCTTGGTTCAGGGAACTTCGGAGTGGCAAGGTTGGCCAAAGACAAGGAGACAGGAGAACTTGTTGCTATCAAATACATAGAAAGGGGAAAAAAGATTGATGCAAATGTTCAACGGGAGATAGTTAATCATCGATCTTTAAGGCATCCAAATATTATCAGGTTCAAAGAGGTATTTCTGACCCCTACTCATTTAGCTATCGTCCTAGAGTATGCTGCTGGTGGTGAACTCTTCGAGAGGATATGCAATGCTGGTCGATTGAGTGAAGATGAGGCAAGATTTTTCTTTCAACAACTAATATCTGGAGTTAGCTATTGTCATTCCATGCAAATATGTCATAGAGATCTGAAATTGGAAAACACTCTACTAGACGGAAATCCAGCTCCTAGACTTAAAATTTGTGACTTTGGTTTCTCCAAGTCTGCTTTGCTGCACTCTCAACCTAAATCAACTGTTGGAACACCTGCATACATTGCTCCAGAAGTTTTGTCACGAAAGGAATATGATGGAAAGGTTGCCGATGTTTGGTCGTGTGGTGTGACTCTTTATGTCATGTTAGTTGGAGCATACCCATTTGAAGATCCAGAAGATCCTAAAAATTTCAGAAAGAGTATTGGGAGAATTATGAGTGTTCAATACGCCATACCCGACTACGTGCGTGTCTCTAAGGAGTGTAGGCATCTTATCTCTTGTATTTTTGTTGCCAATCCTGCCAAGAGGATCAGCATCTCGGAGATAAAACAGCACCTTTGGTTTAGGAAGAACCTGCCAAGGGAGATAATTGAGGCTGAAAGAAGGGGTTACGAGGAAACACAAAAGGACCAACCAAGCCAAAGTGTGGAAGAAATCATGCGGATCATACAAGAAGCAAGGACAAAAATCCACACTGGTGAGCAAGCTGGTACAGGAACTTCGGATGCTGTGCATGGTGATGAGGCTAATGAGGAAGTTGATATTAATGACCACTATGCCAAATACCTAGCCCTTAATTAGTTTGTGGTTGGGTGTTTACCAAAGCTAGTGTGCATTCTTCGTGTGTAAGGTATAGAGTTGAATGAGACATAACACTTCATCGAATTTGAGAGTTGTATCAATTATAATGAGAATCAAACTTTGTTGTTTGGGTAAGTTTGTTGAAACTTAGTTTTAAGACAATTAATTTCGTTTGAATGCAACAAACTAATTAGTAGA
>Glyma01g41260.1 sequence type=CDS gene model=Glyma01g41260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAACGGTACGAGACTTTGAAGGAGCTTGGTTCAGGGAACTTCGGAGTGGCAAGGTTGGCCAAAGACAAGGAGACAGGAGAACTTGTTGCTATCAAATACATAGAAAGGGGAAAAAAGATTGATGCAAATGTTCAACGGGAGATAGTTAATCATCGATCTTTAAGGCATCCAAATATTATCAGGTTCAAAGAGGTATTTCTGACCCCTACTCATTTAGCTATCGTCCTAGAGTATGCTGCTGGTGGTGAACTCTTCGAGAGGATATGCAATGCTGGTCGATTGAGTGAAGATGAGGCAAGATTTTTCTTTCAACAACTAATATCTGGAGTTAGCTATTGTCATTCCATGCAAATATGTCATAGAGATCTGAAATTGGAAAACACTCTACTAGACGGAAATCCAGCTCCTAGACTTAAAATTTGTGACTTTGGTTTCTCCAAGTCTGCTTTGCTGCACTCTCAACCTAAATCAACTGTTGGAACACCTGCATACATTGCTCCAGAAGTTTTGTCACGAAAGGAATATGATGGAAAGGTTGCCGATGTTTGGTCGTGTGGTGTGACTCTTTATGTCATGTTAGTTGGAGCATACCCATTTGAAGATCCAGAAGATCCTAAAAATTTCAGAAAGAGTATTGGGAGAATTATGAGTGTTCAATACGCCATACCCGACTACGTGCGTGTCTCTAAGGAGTGTAGGCATCTTATCTCTTGTATTTTTGTTGCCAATCCTGCCAAGAGGATCAGCATCTCGGAGATAAAACAGCACCTTTGGTTTAGGAAGAACCTGCCAAGGGAGATAATTGAGGCTGAAAGAAGGGGTTACGAGGAAACACAAAAGGACCAACCAAGCCAAAGTGTGGAAGAAATCATGCGGATCATACAAGAAGCAAGGACAAAAATCCACACTGGTGAGCAAGCTGGTACAGGAACTTCGGATGCTGTGCATGGTGATGAGGCTAATGAGGAAGTTGATATTAATGACCACTATGCCAAATACCTAGCCCTTAATTAG >Glyma01g41260.2 sequence type=CDS gene model=Glyma01g41260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAGAACGGTACGAGACTTTGAAGGAGCTTGGTTCAGGGAACTTCGGAGTGGCAAGGTTGGCCAAAGACAAGGAGACAGGAGAACTTGTTGCTATCAAATACATAGAAAGGGGAAAAAAGATTGATGCAAATGTTCAACGGGAGATAGTTAATCATCGATCTTTAAGGCATCCAAATATTATCAGGTTCAAAGAGGTATTTCTGACCCCTACTCATTTAGCTATCGTCCTAGAGTATGCTGCTGGTGGTGAACTCTTCGAGAGGATATGCAATGCTGGTCGATTGAGTGAAGATGAGGCAAGATTTTTCTTTCAACAACTAATATCTGGAGTTAGCTATTGTCATTCCATGCAAATATGTCATAGAGATCTGAAATTGGAAAACACTCTACTAGACGGAAATCCAGCTCCTAGACTTAAAATTTGTGACTTTGGTTTCTCCAAGTCTGCTTTGCTGCACTCTCAACCTAAATCAACTGTTGGAACACCTGCATACATTGCTCCAGAAGTTTTGTCACGAAAGGAATATGATGGAAAGGTTGCCGATGTTTGGTCGTGTGGTGTGACTCTTTATGTCATGTTAGTTGGAGCATACCCATTTGAAGATCCAGAAGATCCTAAAAATTTCAGAAAGAGTATTGGGAGAATTATGAGTGTTCAATACGCCATACCCGACTACGTGCGTGTCTCTAAGGAGTGTAGGCATCTTATCTCTTGTATTTTTGTTGCCAATCCTGCCAAGAGGATCAGCATCTCGGAGATAAAACAGCACCTTTGGTTTAGGAAGAACCTGCCAAGGGAGATAATTGAGGCTGAAAGAAGGGGTTACGAGGAAACACAAAAGGACCAACCAAGCCAAAGTGTGGAAGAAATCATGCGGATCATACAAGAAGCAAGGACAAAAATCCACACTGGTGAGCAAGCTGGTACAGGAACTTCGGATGCTGTGCATGGTGATGAGGCTAATGAGGAAGTTGATATTAATGACCACTATGCCAAATACCTAGCCCTTAATTAG
>Glyma01g41260.1 sequence type=predicted peptide gene model=Glyma01g41260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEERYETLKELGSGNFGVARLAKDKETGELVAIKYIERGKKIDANVQREIVNHRSLRHPNIIRFKEVFLTPTHLAIVLEYAAGGELFERICNAGRLSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGNPAPRLKICDFGFSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKSIGRIMSVQYAIPDYVRVSKECRHLISCIFVANPAKRISISEIKQHLWFRKNLPREIIEAERRGYEETQKDQPSQSVEEIMRIIQEARTKIHTGEQAGTGTSDAVHGDEANEEVDINDHYAKYLALN* >Glyma01g41260.2 sequence type=predicted peptide gene model=Glyma01g41260 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEERYETLKELGSGNFGVARLAKDKETGELVAIKYIERGKKIDANVQREIVNHRSLRHPNIIRFKEVFLTPTHLAIVLEYAAGGELFERICNAGRLSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGNPAPRLKICDFGFSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKVADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKSIGRIMSVQYAIPDYVRVSKECRHLISCIFVANPAKRISISEIKQHLWFRKNLPREIIEAERRGYEETQKDQPSQSVEEIMRIIQEARTKIHTGEQAGTGTSDAVHGDEANEEVDINDHYAKYLALN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
