SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G07615 | AT | Annotation by Michelle Graham. TAIR10: GTP-binding protein Obg/CgtA | chr1:2342277-2344200 REVERSE LENGTH=493 | SoyBase | E_val: 2.00E-110 | ISS |
| KOG1489 | KOG | Predicted GTP-binding protein (ODN superfamily) | JGI | ISS | |
| PTHR11702 | Panther | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED | JGI | ISS | |
| PTHR11702:SF3 | Panther | GTP-BINDING PROTEIN, GTP1/OBG-FAMILY | JGI | ISS | |
| PF01018 | PFAM | GTP1/OBG | JGI | ISS | |
| PF01926 | PFAM | GTPase of unknown function | JGI | ISS | |
| UniRef100_G7I2N7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GTPase obg n=1 Tax=Medicago truncatula RepID=G7I2N7_MEDTR | SoyBase | E_val: 3.00E-165 | ISS |
| UniRef100_I1J9N2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1J9N2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g41081 not represented in the dataset |
Glyma01g41081 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g202300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g41081.1 sequence type=CDS gene model=Glyma01g41081 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGGTCTTTCAAGCAAAGTGCATTAAACACATGGAAGCTTTTACTCAAAGGTTTATATCTAGATGGTCCGTTACACTTTACGCTCGTTACTCTGATACTCCTCAGAAGAAGTCTAAGCTTGCTCCTTTGCAGGAGAGAAGAATGATGGACCAGTGTAAGATATTTGCAAAAGCAGGTGATGGAGGTAATGGTTGTTCTAGCTTGCGCAAGGGAAGACCTTATGGTGGCAATGGGGGGAGAGGTGGTGATATTATTCTTGAATGCTCTCACAGAGTTTGGGACTTCAGTGGTTTGCAGCGTCACCTGTTGATAGGTAGCAGGGATGCTGATAAGATACGACAACCCGTTGATTCCGATCACCCTTGGGATATTCCCGGAGCACTTGTTGATGATTTTCCTAACCCTGGCAATGGTTCTACCTCCGGTGTTACTAGTGGGGAAGTCAAAGCAATGCATTCTACTGGCTGCTCCTCATCACAAGATGAAGAAACAGATGTTAAGAAATCTGAAAAATCAAGACAAGTTGCATTAACAAATGTATTTTCTCAACTCTCCACTTCTAATGGAGCTCCTGAATTTGGAACAGAGGATATAGGAGGGAAACAAGAGATACTATACAATGTTGCTGAGTTAACAGAAGAAGGTCAACAAATTGTCATTGCTCGTGGAGGAGAGGCAAGCAGAACTCAAAAGAGTATTGCTGATGTGAGCTTTGTGGGAATGCCTAATGCTGGTAAAAGCACTTTACTTGGGGCTATATCAAGGGCTAAGCCTGCTGTTGGTGACTATGCCTTCACTACTCTCAGGCCAAATTTGGGGAATCTAAACTATGATGATCTCTCAATAACTGTGGCTGATATTCCTGGACTTATAAAAGGCGCACACCAAAATCGTGGACTCGGACATGCATTTCTGCGCCACATAGAACGCACAAAGGTTCTTGCTTATGTGGTAGACTTGGCTGCTACTTTAAATGGAAGAAAGGGAATTCCACCATGGGAACAGCTGAGAGACTTAATTCTAGAGCTAGAGTACCATCAAGACGGTTTATCCAAACGACCATCCTTGATAGTTGCAAATAAGACTGATGAGGAAGGTGCAGAAGAAGTGTATAAAGAGTTAAAGAGAAGGGTCCAGGGTGTTCCCATCTTTCCTGTGTGTTTCTCTCTCTACCTATCTTTCGTTGTCCACAAAGAAACAGTCAAGCCTGTTGTGTTTCAGAGCAACAAGGGCAGTTGA
>Glyma01g41081.1 sequence type=predicted peptide gene model=Glyma01g41081 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLVFQAKCIKHMEAFTQRFISRWSVTLYARYSDTPQKKSKLAPLQERRMMDQCKIFAKAGDGGNGCSSLRKGRPYGGNGGRGGDIILECSHRVWDFSGLQRHLLIGSRDADKIRQPVDSDHPWDIPGALVDDFPNPGNGSTSGVTSGEVKAMHSTGCSSSQDEETDVKKSEKSRQVALTNVFSQLSTSNGAPEFGTEDIGGKQEILYNVAELTEEGQQIVIARGGEASRTQKSIADVSFVGMPNAGKSTLLGAISRAKPAVGDYAFTTLRPNLGNLNYDDLSITVADIPGLIKGAHQNRGLGHAFLRHIERTKVLAYVVDLAATLNGRKGIPPWEQLRDLILELEYHQDGLSKRPSLIVANKTDEEGAEEVYKELKRRVQGVPIFPVCFSLYLSFVVHKETVKPVVFQSNKGS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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