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Report for Sequence Feature Glyma01g41070

Feature Type:gene_model
Chromosome:Gm01
Start:52622088
stop:52623699
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g41070
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G45760AT Annotation by Michelle Graham. TAIR10: BON association protein 2 | chr2:18847125-18847748 REVERSE LENGTH=207 SoyBaseE_val: 5.00E-35ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009693GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF00168PFAM C2 domain JGI ISS
UniRef100_H9DXV8UniRef Annotation by Michelle Graham. Most informative UniRef hit: BAP1 n=1 Tax=Vitis vinifera RepID=H9DXV8_VITVI SoyBaseE_val: 3.00E-42ISS
UniRef100_I1J9N1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9N1_SOYBN SoyBaseE_val: 2.00E-124ISS

Expression Patterns of Glyma01g41070
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g41070
ParalogEvidenceComments
Glyma11g04360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g41070 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g202200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g41070
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma01g41070
>Glyma01g41070.1   sequence type=CDS   gene model=Glyma01g41070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAAGAACTGTAGAGATGACAATTTTGTCCGCAGAAAACCTCCAAATGAATAGAAAATCCATTAGAGGAAGCACATTTGTGACGGTTCAATCCGACACTAGCAGCGACACAAGTGCTGCTACCAAAGTGGATTCAGAGGGTGGAAGTTACCCTTCGTGGAATGAGAAGGTTGTGATGGACGTGCCATTGCATGCAAGGTTCATAACCGTTGAAGTGAAGTGCAAAACGTCATCATCAGGGTCTAACAGTGTTGGCGTGGCACAAATTCCGGTTTCTGATTTCATTGGAGGGTATATGCCCGAAAACCAATTGCATTTCTTGAGCTATAGGTTGTGGGACGGCAAAGTTAGGAGAAATGGGGTTATAAACATTTCGGTGAGGGTGAAAGTGGCTGAACATTCTTCTTGTAATTTGAATTCTATGTCATTGTCAGCGGTAACTGGGGTGCCGGTGGCCGGTAATGGCCCCACTGGAGTTGTCACAGGGATTCCAGCTGTTTGGTTAAACTACCAAAGAAATCTTTGA
Predicted protein sequences of Glyma01g41070
>Glyma01g41070.1   sequence type=predicted peptide   gene model=Glyma01g41070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRTVEMTILSAENLQMNRKSIRGSTFVTVQSDTSSDTSAATKVDSEGGSYPSWNEKVVMDVPLHARFITVEVKCKTSSSGSNSVGVAQIPVSDFIGGYMPENQLHFLSYRLWDGKVRRNGVINISVRVKVAEHSSCNLNSMSLSAVTGVPVAGNGPTGVVTGIPAVWLNYQRNL*






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