Report for Sequence Feature Glyma01g41050
Feature Type: gene_model
Chromosome: Gm01
Start: 52617779
stop: 52620845
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g41050
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G17030 AT
Annotation by Michelle Graham. TAIR10: expansin-like B1 | chr4:9581817-9583181 REVERSE LENGTH=250
SoyBase E_val: 3.00E-57 ISS
GO:0009826 GO-bp
Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth
SoyBase N/A ISS
GO:0009828 GO-bp
Annotation by Michelle Graham. GO Biological Process: plant-type cell wall loosening
SoyBase N/A ISS
GO:0019953 GO-bp
Annotation by Michelle Graham. GO Biological Process: sexual reproduction
SoyBase N/A ISS
GO:0005576 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: extracellular region
SoyBase N/A ISS
PF01357 PFAM
Pollen allergen
JGI ISS
PF03330 PFAM
Rare lipoprotein A (RlpA)-like double-psi beta-barrel
JGI ISS
UniRef100_B9SS10 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Major pollen allergen Ory s 1, putative n=1 Tax=Ricinus communis RepID=B9SS10_RICCO
SoyBase E_val: 6.00E-142 ISS
UniRef100_UPI00023372ED UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023372ED related cluster n=1 Tax=unknown RepID=UPI00023372ED
SoyBase E_val: 0 ISS
Proteins Associated with Glyma01g41050
Locus Gene Symbol Protein Name
EXLB2 expansin-like B gene 2
Expression Patterns of Glyma01g41050
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma01g41050
Paralog Evidence Comments
Glyma11g04370 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g41050 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g202100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g41050
Coding sequences of Glyma01g41050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g41050.2 sequence type=CDS gene model=Glyma01g41050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGCTTTATCTTTTCTGTCTTCTTCTTGCTATCACCTTCATTTTCATGCAAACTCTGGCAGATACTTCATGCACTGATTGTTTCATTCATTCTCGGGCTGCTTATTATCCAAATTCTGAAGAACACGGAACAGATATTGGTGCATGTGGGTTTGGTTCCTTTGGTGCTACAGTCAATGGTGGAGATGTATCAGCTGCATCTTCTCTTTATCGAAATGGTGTTGGTTGTGGTGCCTGTTACCAGGTGAGGTGTACCAACAGTGTATATTGCTCAGAAAATGGTGTGACTGCAGTTATAACCGACCAAGGTTCAAGTGATAACACTGATTTCATTCTTAGCAAACATGCCTTTAGCCGGATGGCTCAAACCACTGATGCAGCTGCTTCTCTATTAGCCCTTGGCGTGGTTGATATTGAATATAGACGTGTTGCATGCAGCTACCCAGATAAAAACATAACAATCAAGATAGATGAGAGCAGCAACAACCCATATTACTTGGCTTTTGTCATTTGGTATCAACAAGGAAGGAGAGACATAACTGCTGTGCAGCTCTGTGAGACTCAAAACTTTGTGTGCCAGTTACTGGATAGGAGCCATGGGGCAGTGTGGACTACTACCTCTCCACCGAGTGGACCCTTGTCTTTAAGGATGTTATTTAGTGATGAAGAAGAGGGAGAAGAAACATGGGTTGTTCCTGTTAATAACATACCCGGAGACTGGAAGGCTGGTGAAACATACGATTCAGGGGTACAAGTGAACCAATAG
Predicted protein sequences of Glyma01g41050
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g41050.2 sequence type=predicted peptide gene model=Glyma01g41050 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MALYLFCLLLAITFIFMQTLADTSCTDCFIHSRAAYYPNSEEHGTDIGACGFGSFGATVNGGDVSAASSLYRNGVGCGACYQVRCTNSVYCSENGVTAVITDQGSSDNTDFILSKHAFSRMAQTTDAAASLLALGVVDIEYRRVACSYPDKNITIKIDESSNNPYYLAFVIWYQQGRRDITAVQLCETQNFVCQLLDRSHGAVWTTTSPPSGPLSLRMLFSDEEEGEETWVVPVNNIPGDWKAGETYDSGVQVNQ*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
