Glyma01g41030 - SoyBase

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Report for Sequence Feature Glyma01g41030

Feature Type:	gene_model
Chromosome:	Gm01
Start:	52609003
stop:	52613430
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g41030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38740	AT	Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr2:16194639-16195995 REVERSE LENGTH=244	SoyBase	E_val: 2.00E-122	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG2914	KOG	Predicted haloacid-halidohydrolase and related hydrolases	JGI		ISS
PTHR18901	Panther	2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2	JGI		ISS
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI		ISS
UniRef100_C6T7T3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6T7T3_SOYBN	SoyBase	E_val: 2.00E-180	ISS
UniRef100_G7JYQ1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pyrophosphatase ppaX n=1 Tax=Medicago truncatula RepID=G7JYQ1_MEDTR	SoyBase	E_val: 6.00E-151	ISS

Expression Patterns of Glyma01g41030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g41030 not represented in the dataset	Glyma01g41030 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g41030

Paralog	Evidence	Comments
Glyma11g04380	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g41030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g202000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g41030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g41030

Limit To All Plant Sequences

>Glyma01g41030.2   sequence type=transcript   gene model=Glyma01g41030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGTTAAATTTCAGGATAAGGGAAGGTACTTCAGTGTATCATCTATGTTTTAAATAAAAAGGACTCTTGCGGGGACACGTTACTTAGACATATAAACCATTTATGTGCCTTACGCTATGGCTTATGCTTTTGGTATAGTTGGCTACTGGGTTCTTGACATGCTTCGTGATAGAAATTTTAGTTTATAGGCATATCCTACTTTATCATTCACAGTCAACTTGTACTTGTCACTCATTACTTTCTTGTTGTGTCAGCGGCCAGAGTTCTCTCACCGGTCTTGCTCCACTTGAAGCTGTGCTCTTTGATATAGATGGAACACTTTGTGATTCTGATCCGCTCCACTATTATGCCTTCCGTGAAATGCTTCTAGAGATTGGTTTTAATGGAGGTGTTCCTATATCAGAGGAATTCTTTATTGACACTGTTGCTGGCAAACACAATGATGATATAGCCTTGGTTCTCTTTCCTGGTGATCTGGAACGAGGTTTAAAGTTTGTGGATGATAAGGAAGCCATGTTCCGGAGATTGGCCGCAGAGCAACTGAAGCCTTTGAATGGTCTTGATAAAGTGAGGAAATGGATTGAAAATCATGGGCTGAAGAGAGCTGCAGTTACCAATGCTCCAAGAGCAAATGCAGAACTCATGATCTCAATACTTGGTCTCTCAGATTTCTTCGACGCTGTTATTATTGGTGGTGAATGTGAACATGCCAAGCCTCATCCAGACCCCTACCTGAAAGGTCTCGAAGCTCTGAAGGCATCAAAGGACCACACATTTGTATTTGAGGATTCTGTTTCAGGGATCAAAGCTGGAGTTGCAGCTGGGATGCCTGTTATTGGTTTAGCTACTCGAAACCCAGAAAATTTATTGATGGAAGCAAAACCTGCCTTTCTGATTAAGGATTATGAGGATCCAAAATTGTGGGCAGCTTTGGAAGAACTTGACAAGGCTACCAGTGCTCGTTCAGTTTGAATTACTAGTGCAACTGACAGAATTTTCTGATAAAAACAAATAGCGGGATTCACGTTAAATTCAGAGGTTCGCCTGCATAATTTTGTTGTAGGTGGCCACATTATACTACTAGTGCATAATTAGTGTTGCTTTGCAACCGAGAGCAGACAGTTATATTCTATTTATGTTTTGTAATAATGTCATTATCAGTATGAACTCGCGGGTTAAGCCAAGCAGATTGCTGAGCCCAAGTGATATTGTTTACACTTGACAGAATCAAAATATAAAATCTATCACAAATAATTTACAATATATATTGTTTAAAAGTCATTACTCATTACATAAGAGCTGGGCTATAATTTAGTTTTAT

>Glyma01g41030.3   sequence type=transcript   gene model=Glyma01g41030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTTTATGCTTTTTGGCATATTCCATTAGATTAGCATAACATGCTCAAGTGACTCTCGCTCTCTTTCTCTGTTTCACGCTCATCTTTCTCTGTTTCACGCTCATCTTTCAGTTTCACTAACAATGACAGTTTCTTCTGAGAATGGCGTCTCAAGCGGCCAGAGTTCTCTCACCGGTCTTGCTCCACTTGAAGCTGTGCTCTTTGATATAGATGGAACACTTTGTGATTCTGATCCGCTCCACTATTATGCCTTCCGTGAAATGCTTCTAGAGATTGGTTTTAATGGAGGTGTTCCTATATCAGAGGAATTCTTTATTGACACTGTTGCTGGCAAACACAATGATGATATAGCCTTGGTTCTCTTTCCTGGTGATCTGGAACGAGGTTTAAAGTTTGTGGATGATAAGGAAGCCATGTTCCGGAGATTGGCCGCAGAGCAACTGAAGCCTTTGAATGGTCTTGATAAAGTGAGGAAATGGATTGAAAATCATGGGCTGAAGAGAGCTGCAGTTACCAATGCTCCAAGAGCAAATGCAGAACTCATGATCTCAATACTTGGTCTCTCAGATTTCTTCGACGCTGTTATTATTGGTGGTGAATGTGAACATGCCAAGCCTCATCCAGACCCCTACCTGAAAGGTCTCGAAGCTCTGAAGGCATCAAAGGACCACACATTTGTATTTGAGGTCTGCATTTTTGTAATGCCTTCTTGAAGAATAATTTGTTCTGTATCTGCTTTTGACACAACATTTCTTCTTTGGTTATAGGATTCTGTTTCAGGGATCAAAGCTGGAGTTGCAGCTGGGATGCCTGTTATTGGTTTAGCTACTCGAAACCCAGAAAATTTATTGATGGAAGCAAAACCTGCCTTTCTGATTAAGGATTATGAGGATCCAAAATTGTGGGCAGCTTTGGAAGAACTTGACAAGGCTACCAGTGCTCGTTCAGTTTGAATTACTAGTGCAACTGACAGAATTTTCTGATAAAAACAAATAGCGGGATTCACGTTAAATTCAGAGGTTCGCCTGCATAATTTTGTTGTAGGTGGCCACATTATACTACTAGTGCATAATTAGTGTTGCTTTGCAACCGAGAGCAGACAGTTATATTCTATTTATGTTTTGTAATAATGTCATTATCAGTATGAACTCGCGGGTTAAGCCAAGCAGATTGCTGAGCCCAAGTGATATTGTTTACACTTGACAGAATCAAAATATAAAATCTATCACAAATAATTTACAATATATATTGTTTAAAAGTCATTACTCATTACATAAGAGCTGGGCTATAATTTAGTTTTAT

>Glyma01g41030.4   sequence type=transcript   gene model=Glyma01g41030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTTTATGCTTTTTGGCATATTCCATTAGATTAGCATAACATGCTCAAGTGACTCTCGCTCTCTTTCTCTGTTTCACGCTCATCTTTCTCTGTTTCACGCTCATCTTTCAGTTTCACTAACAATGACAGTTTCTTCTGAGAATGGCGTCTCAAGCGGCCAGAGTTCTCTCACCGGTCTTGCTCCACTTGAAGCTGTGCTCTTTGATATAGATGGAACACTTTGTGATTCTGATCCGCTCCACTATTATGCCTTCCGTGAAATGCTTCTAGAGATTGGTTTTAATGGAGGTGTTCCTATATCAGAGGAATTCTTTATTGACACTGTTGCTGGCAAACACAATGATGATATAGCCTTGGTTCTCTTTCCTGGTGATCTGGAACGAGGTTTAAAGTTTGTGGATGATAAGGAAGCCATGTTCCGGAGATTGGCCGCAGAGCAACTGAAGCCTTTGAATGGTCTTGATAAAGTGAGGAAATGGATTGAAAATCATGGGCTGAAGAGAGCTGCAGTTACCAATGCTCCAAGAGCAAATGCAGAACTCATGATCTCAATACTTGGTCTCTCAGATTTCTTCGACGCTGTTATTATTGGTGGTGAATGTGAACATGCCAAGCCTCATCCAGACCCCTACCTGAAAGGTCTCGAAGCTCTGAAGGCATCAAAGGACCACACATTTGTATTTGAGGATTCTGTTTCAGGGATCCTATTATCCTCTACGAGGATAAAACTACAAATATTTTACTTTCCCCGAACTCTATAACAGTGGATGCCAGGTGAACTATGTTGTACTTTTCAT

Coding sequences of Glyma01g41030

Limit To All Plant Sequences

>Glyma01g41030.1   sequence type=CDS   gene model=Glyma01g41030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGTTTCTTCTGAGAATGGCGTCTCAAGCGGCCAGAGTTCTCTCACCGGTCTTGCTCCACTTGAAGCTGTGCTCTTTGATATAGATGGAACACTTTGTGATTCTGATCCGCTCCACTATTATGCCTTCCGTGAAATGCTTCTAGAGATTGGTTTTAATGGAGGTGTTCCTATATCAGAGGAATTCTTTATTGACACTGTTGCTGGCAAACACAATGATGATATAGCCTTGGTTCTCTTTCCTGGTGATCTGGAACGAGGTTTAAAGTTTGTGGATGATAAGGAAGCCATGTTCCGGAGATTGGCCGCAGAGCAACTGAAGCCTTTGAATGGTCTTGATAAAGTGAGGAAATGGATTGAAAATCATGGGCTGAAGAGAGCTGCAGTTACCAATGCTCCAAGAGCAAATGCAGAACTCATGATCTCAATACTTGGTCTCTCAGATTTCTTCGACGCTGTTATTATTGGTGGTGAATGTGAACATGCCAAGCCTCATCCAGACCCCTACCTGAAAGGTCTCGAAGCTCTGAAGGCATCAAAGGACCACACATTTGTATTTGAGGATTCTGTTTCAGGGATCAAAGCTGGAGTTGCAGCTGGGATGCCTGTTATTGGTTTAGCTACTCGAAACCCAGAAAATTTATTGATGGAAGCAAAACCTGCCTTTCTGATTAAGGATTATGAGGATCCAAAATTGTGGGCAGCTTTGGAAGAACTTGACAAGGCTACCAGTGCTCGTTCAGTTTGA

>Glyma01g41030.2   sequence type=CDS   gene model=Glyma01g41030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTCTAGAGATTGGTTTTAATGGAGGTGTTCCTATATCAGAGGAATTCTTTATTGACACTGTTGCTGGCAAACACAATGATGATATAGCCTTGGTTCTCTTTCCTGGTGATCTGGAACGAGGTTTAAAGTTTGTGGATGATAAGGAAGCCATGTTCCGGAGATTGGCCGCAGAGCAACTGAAGCCTTTGAATGGTCTTGATAAAGTGAGGAAATGGATTGAAAATCATGGGCTGAAGAGAGCTGCAGTTACCAATGCTCCAAGAGCAAATGCAGAACTCATGATCTCAATACTTGGTCTCTCAGATTTCTTCGACGCTGTTATTATTGGTGGTGAATGTGAACATGCCAAGCCTCATCCAGACCCCTACCTGAAAGGTCTCGAAGCTCTGAAGGCATCAAAGGACCACACATTTGTATTTGAGGATTCTGTTTCAGGGATCAAAGCTGGAGTTGCAGCTGGGATGCCTGTTATTGGTTTAGCTACTCGAAACCCAGAAAATTTATTGATGGAAGCAAAACCTGCCTTTCTGATTAAGGATTATGAGGATCCAAAATTGTGGGCAGCTTTGGAAGAACTTGACAAGGCTACCAGTGCTCGTTCAGTTTGA

>Glyma01g41030.3   sequence type=CDS   gene model=Glyma01g41030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGTTTCTTCTGAGAATGGCGTCTCAAGCGGCCAGAGTTCTCTCACCGGTCTTGCTCCACTTGAAGCTGTGCTCTTTGATATAGATGGAACACTTTGTGATTCTGATCCGCTCCACTATTATGCCTTCCGTGAAATGCTTCTAGAGATTGGTTTTAATGGAGGTGTTCCTATATCAGAGGAATTCTTTATTGACACTGTTGCTGGCAAACACAATGATGATATAGCCTTGGTTCTCTTTCCTGGTGATCTGGAACGAGGTTTAAAGTTTGTGGATGATAAGGAAGCCATGTTCCGGAGATTGGCCGCAGAGCAACTGAAGCCTTTGAATGGTCTTGATAAAGTGAGGAAATGGATTGAAAATCATGGGCTGAAGAGAGCTGCAGTTACCAATGCTCCAAGAGCAAATGCAGAACTCATGATCTCAATACTTGGTCTCTCAGATTTCTTCGACGCTGTTATTATTGGTGGTGAATGTGAACATGCCAAGCCTCATCCAGACCCCTACCTGAAAGGTCTCGAAGCTCTGAAGGCATCAAAGGACCACACATTTGTATTTGAGGTCTGCATTTTTGTAATGCCTTCTTGA

>Glyma01g41030.4   sequence type=CDS   gene model=Glyma01g41030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGTTTCTTCTGAGAATGGCGTCTCAAGCGGCCAGAGTTCTCTCACCGGTCTTGCTCCACTTGAAGCTGTGCTCTTTGATATAGATGGAACACTTTGTGATTCTGATCCGCTCCACTATTATGCCTTCCGTGAAATGCTTCTAGAGATTGGTTTTAATGGAGGTGTTCCTATATCAGAGGAATTCTTTATTGACACTGTTGCTGGCAAACACAATGATGATATAGCCTTGGTTCTCTTTCCTGGTGATCTGGAACGAGGTTTAAAGTTTGTGGATGATAAGGAAGCCATGTTCCGGAGATTGGCCGCAGAGCAACTGAAGCCTTTGAATGGTCTTGATAAAGTGAGGAAATGGATTGAAAATCATGGGCTGAAGAGAGCTGCAGTTACCAATGCTCCAAGAGCAAATGCAGAACTCATGATCTCAATACTTGGTCTCTCAGATTTCTTCGACGCTGTTATTATTGGTGGTGAATGTGAACATGCCAAGCCTCATCCAGACCCCTACCTGAAAGGTCTCGAAGCTCTGAAGGCATCAAAGGACCACACATTTGTATTTGAGGATTCTGTTTCAGGGATCCTATTATCCTCTACGAGGATAAAACTACAAATATTTTACTTTCCCCGAACTCTATAA

Predicted protein sequences of Glyma01g41030

Limit To All Plant Sequences

>Glyma01g41030.1   sequence type=predicted peptide   gene model=Glyma01g41030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVSSENGVSSGQSSLTGLAPLEAVLFDIDGTLCDSDPLHYYAFREMLLEIGFNGGVPISEEFFIDTVAGKHNDDIALVLFPGDLERGLKFVDDKEAMFRRLAAEQLKPLNGLDKVRKWIENHGLKRAAVTNAPRANAELMISILGLSDFFDAVIIGGECEHAKPHPDPYLKGLEALKASKDHTFVFEDSVSGIKAGVAAGMPVIGLATRNPENLLMEAKPAFLIKDYEDPKLWAALEELDKATSARSV*

>Glyma01g41030.2   sequence type=predicted peptide   gene model=Glyma01g41030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLEIGFNGGVPISEEFFIDTVAGKHNDDIALVLFPGDLERGLKFVDDKEAMFRRLAAEQLKPLNGLDKVRKWIENHGLKRAAVTNAPRANAELMISILGLSDFFDAVIIGGECEHAKPHPDPYLKGLEALKASKDHTFVFEDSVSGIKAGVAAGMPVIGLATRNPENLLMEAKPAFLIKDYEDPKLWAALEELDKATSARSV*

>Glyma01g41030.3   sequence type=predicted peptide   gene model=Glyma01g41030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVSSENGVSSGQSSLTGLAPLEAVLFDIDGTLCDSDPLHYYAFREMLLEIGFNGGVPISEEFFIDTVAGKHNDDIALVLFPGDLERGLKFVDDKEAMFRRLAAEQLKPLNGLDKVRKWIENHGLKRAAVTNAPRANAELMISILGLSDFFDAVIIGGECEHAKPHPDPYLKGLEALKASKDHTFVFEVCIFVMPS*

>Glyma01g41030.4   sequence type=predicted peptide   gene model=Glyma01g41030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVSSENGVSSGQSSLTGLAPLEAVLFDIDGTLCDSDPLHYYAFREMLLEIGFNGGVPISEEFFIDTVAGKHNDDIALVLFPGDLERGLKFVDDKEAMFRRLAAEQLKPLNGLDKVRKWIENHGLKRAAVTNAPRANAELMISILGLSDFFDAVIIGGECEHAKPHPDPYLKGLEALKASKDHTFVFEDSVSGILLSSTRIKLQIFYFPRTL*

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