Glyma01g40985 - SoyBase

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Report for Sequence Feature Glyma01g40985

Feature Type:	gene_model
Chromosome:	Gm01
Start:	52602996
stop:	52604117
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g40985

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
ATCG00360	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chrC:42584-43751 REVERSE LENGTH=126	SoyBase	E_val: 6.00E-70	ISS
GO:0006091	GO-bp	Annotation by Michelle Graham. GO Biological Process: generation of precursor metabolites and energy	SoyBase	N/A	ISS
GO:0006354	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0048564	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem I assembly	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
PTHR26312	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR26312:SF22	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00515	PFAM	Tetratricopeptide repeat	JGI		ISS
UniRef100_G8A326	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Photosystem I assembly protein Ycf3 n=1 Tax=Medicago truncatula RepID=G8A326_MEDTR	SoyBase	E_val: 1.00E-71	ISS
UniRef100_G8A326	UniRef	Annotation by Michelle Graham. Best UniRef hit: Photosystem I assembly protein Ycf3 n=1 Tax=Medicago truncatula RepID=G8A326_MEDTR	SoyBase	E_val: 1.00E-71	ISS

Expression Patterns of Glyma01g40985

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g40985 not represented in the dataset	Glyma01g40985 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma01g40985 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g201600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g40985

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g40985

Limit To All Plant Sequences

>Glyma01g40985.1   sequence type=CDS   gene model=Glyma01g40985   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACTCAATCTGAAGGAAATTATGCAGAAGCTTTCCAAAATTATTATGAGGCTATGCGACTGAAAATTGATCCCTATGATCGAAGTTGTATACTTTATAACATAGGCCTTATCCACACAAGTAACGAAGAACATATTAAAGCTTTGGAATATTATTTTTGGGCGCTCGAGCGAGACCCATTCTTACCCCAAGCTTTTAATATGGTCGTGATCTGTCATTACGCCATTCGACAAGGAGACACGGAAGTTGCGAAGTCTTGGTTTAATCAAGTTGCTGAATATTGGAAACAAGCTATAGCCCTAACCCCTGGTAACTATATTGAAGCCCAGAATTGGTTGAAGATCACACGACGTTTTGAATAA

Predicted protein sequences of Glyma01g40985

Limit To All Plant Sequences

>Glyma01g40985.1   sequence type=predicted peptide   gene model=Glyma01g40985   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTQSEGNYAEAFQNYYEAMRLKIDPYDRSCILYNIGLIHTSNEEHIKALEYYFWALERDPFLPQAFNMVVICHYAIRQGDTEVAKSWFNQVAEYWKQAIALTPGNYIEAQNWLKITRRFE*

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