SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G46560 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Inner nuclear membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast hits to 58 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr5:18888061-18890090 FORWARD LENGTH=387 | SoyBase | E_val: 2.00E-120 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005639 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to nuclear inner membrane | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0009543 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF09402 | PFAM | Man1-Src1p-C-terminal domain | JGI | ISS | |
| UniRef100_Q10T68 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q10T68_ORYSJ | SoyBase | E_val: 3.00E-43 | ISS |
| UniRef100_UPI00023378D0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023378D0 related cluster n=1 Tax=unknown RepID=UPI00023378D0 | SoyBase | E_val: 0 | ISS |
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Glyma01g40910 not represented in the dataset |
Glyma01g40910 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g04430 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g200900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g40910.2 sequence type=CDS gene model=Glyma01g40910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCAGAATGATCGGCGAAGGGAGTGTTTGTCTAATTCGAATTCAGAAAGTTGTTCTTTCTCATTGATGGGAAGAGAACCCCCTCAGAATTTGTTACCTTCCAAACACGACTTCCCCAGACTTGTCCTTGTGGTTGCACTCGCATCGCTAGTTGCTTGGACCTGCAACTTCCTCTTCACCCCTTCCAAACCCTTCTGCGACCCCAACCTCCACTCTCCGGATTACTTTTCCGATATTTGTGAACCTTGTCCAAGTAATGGAGAATGCAATGATGGCAAGTTGAAATGTCTTCAGGGTTACCAAAGGCATGGGAACTTGTGTGTAGAAGATGGAGATATTAATGAATCAGCTCGAAAACTTTTGGAGAGAGTGGAACATCACCTCTGTGAAGAATATGCTCAATTTTTGTGCACTGGAACTGGAACAATTTGGGTTCGTGAGGATGATTTATGGAATTATTTTGAGCCAGTGGGAAATGTCAAAGTGGACAATGCTCTTTATAAATATACAAAACAAAAGGCATTTGAGACAATGGGCAAATTATTGGACACGAGGTTAAACAGCTCTCATGGGATGAAGGAGTTTAAGTGTCCAGATCAGCTGGCAGAGCATTACAAGTCATATGCCTGCTGCATTCGTCAGTGGATCTCACAACATATTCTAGTTGTTTTGCCCATTTGTGCCATGCTTGTTGGATGCACAGCTTTGTTCTGGAGTGTACGACAGAAATTATGCATGTCAAGACGAATTGAGGAGCTTTACAATAAGGTCTGTGAAATACTTGAAGAGAATGCATTGACATCAAAGAGTGCAAATGGTGAATGTGAACCCTGGGTTGTTTCTTCTAGGTTACGCGATCACCTGCTTTTGCCAAGAGAGCGGAAGAACCCTTTATTATGGAAAAAGGTAGAAAAAATGGTTCAAGAAGATTCTCGGATAGATCGCTATCCTAAGTTGGTGAAGGGTGAATCAAAAGTTGTATGGGAATGGCAAGTTGAAGGCTCCCTGAGCTTCTCAAAGATGAAAAGAAGAGATGCAAGCAAAACGAGGGTCAACGAAAGCACAGACCTGAATCATCAACACCGCCCTGCAATGAGAACAGAGCCTATGGAACCACTGTTTTTTATCTGA
>Glyma01g40910.2 sequence type=predicted peptide gene model=Glyma01g40910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKQNDRRRECLSNSNSESCSFSLMGREPPQNLLPSKHDFPRLVLVVALASLVAWTCNFLFTPSKPFCDPNLHSPDYFSDICEPCPSNGECNDGKLKCLQGYQRHGNLCVEDGDINESARKLLERVEHHLCEEYAQFLCTGTGTIWVREDDLWNYFEPVGNVKVDNALYKYTKQKAFETMGKLLDTRLNSSHGMKEFKCPDQLAEHYKSYACCIRQWISQHILVVLPICAMLVGCTALFWSVRQKLCMSRRIEELYNKVCEILEENALTSKSANGECEPWVVSSRLRDHLLLPRERKNPLLWKKVEKMVQEDSRIDRYPKLVKGESKVVWEWQVEGSLSFSKMKRRDASKTRVNESTDLNHQHRPAMRTEPMEPLFFI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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