Glyma01g40900 - SoyBase

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Report for Sequence Feature Glyma01g40900

Feature Type:	gene_model
Chromosome:	Gm01
Start:	52553730
stop:	52560423
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g40900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18020	AT	Annotation by Michelle Graham. TAIR10: CheY-like two-component responsive regulator family protein \| chr4:10003738-10006682 REVERSE LENGTH=535	SoyBase	E_val: 2.00E-138	ISS
GO:0000160	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009736	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000156	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF00072	PFAM	Response regulator receiver domain	JGI		ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7JZU4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Two-component response regulator-like protein n=1 Tax=Medicago truncatula RepID=G7JZU4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023378CF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023378CF related cluster n=1 Tax=unknown RepID=UPI00023378CF	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma01g40900

Locus	Gene Symbol	Protein Name
	PRR48	Ubiquitous, Pseudo response regulator

Expression Patterns of Glyma01g40900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g40900

Paralog	Evidence	Comments
Glyma11g04441	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g40900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g200800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g40900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g40900

Limit To All Plant Sequences

>Glyma01g40900.4   sequence type=transcript   gene model=Glyma01g40900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTATGTGGTTCTTAAGGAGCGATGGCAACTGTTCAGTAGTCACAGACACCCTTCAACGACCGTAGTTAAACCTCCTAACTCACTTCCCCTTCCCTCACTCTATTTGCTTTGTTTGTCTTCAATGGAATAAGAGCAGAAAGAAAAGAACACAACTTTGGGCAGAGTAGTTGGTGGGGCATTTTCTTTTCAGCCAAGGTAATAGCTAGGAAACAATAAAAAAAAAGGCTTGGAAAAGAACCACTTTCCGTGTGCATGCTGATTCTACCTTGATTCATGTGTTCAGTTTTGGAGAAAAGGGATCCAGTGTTGATCAGCAATATTGATCTGTTACTTAACTAGGGGACCGAGTAAGAATGCCAAACCAGCTATGGTTTGCACTGCCAATGATTTACAAGAATGGAAAGATTTCCCAAAGGGACTTAGAGTTCTTCTGCTTGAAGGAGATAGTAGTTCTGCTGCTGAGATAAGAGAACAACTTGAGGCCGTGGACTATAATGTTTCCACTTTCTACGATGAGAATGAAGCCTTGTCAGCACTCTCGAGTAGTCCTGAAGGCTTCCATGTTGCTATAGTGGAGGTGAGTACAAGCTGTAGCCTTGGAGGTTTCAAATTTCTTGAGAATTCAAAGGACTTGCCTACCATTATGACTTCAAAGGACCAGTGCCTGAACACCATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTTCTCAGTAAACCACTCTCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTTGTTCACAAGGCATTTAATGCTGGGGCAAATGTCCTGTCTGAATCACTAAAACCTGTCAAAGAATCTGTAGAATCCATGCTGCAGCTTCAAACAGAAAATGGACAAGATAAAAGTAGGATTTCAATTGATTTAGAAAATGTGTCGAGGTTTAGTGATATTGACCATGAGCAGTCTGCTGTATGTGATAAATATCCGGCTCCGTCAACCCCTCAATTAAAGCAGGGGACAAGGTTACTGGATGATGGAGATTGCCATGATCAGACTAATTGCTCAACAGAAAAAGAAAGTGTGGAACATGATGGGGAATGTAAATCTGTCGAAACTTTGTGTGAGAATTTGAATGCTGAAAGTTCTCCTCAACCAAGGGAACCTGATAAGACTCTGATTAAGGAGGAAGAGGATTTTGCCAATGGTTCCAGGGGTGAGAGTGCTGTTTCACTGAGTCCAAATAATAAAAAGTTTCTCAGCAATGCCGATGGTAATACATCTCCAAATAGAACGGGCGTACTTAATGATTCATGTGAGATTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACTCCTGAGCTACATAAAAAATTTGTGAAGGCTGTCGAACAACTAGGTATCGATCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAAGTGGAAGGCTTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATACACAAGAGACAAAGTGCACCCAGGGAAGAAGATCGGAAATGGCATAATCAAAGGGATGCAATGCAAAGGAACTATTATATGCAAAGACCAATCATGGCATACCCTCCATATCATTCAAATCACACCCTTTCTCCAGCTCCTATATATCCTATGTGGGGACAACCTGGTAGTCAAACAGCTGGTGTACAGATTTGGGGCCATCCTGGTTATCACATATGGCATCCTACAGAAAGTTGTCACTGGAAGCCTTATCAGGGGGTGCATGTGGATGCTTGGGGATGCCCATTGTTGCCAGCCCCTCAAGCTCCTTGTTTTCCTTACAATCAAAATATACCTGGATTGCACAATCCTAAAGCAGTGGACTATAGATTCGGCATGCCACAAAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTTGTGAAGGAAGCAATAAGCAAGCCATGGCTACCATTGCCCTTAGGACTCAAACCTCCTTCCATGGATAGTGTGTTGGCTGAGCTCTCCAAACAAGGCATTTCCGGCATCCCTCTTGGCAACAAGCGTTCTTCTACTCCTAAACTCCGCTGACATGTATGACCGACCCCACCACTGGGTCCCACAGAGTAGTGGTTTTGATGATGGGGCCAGCCAGTTACATATCAACGCCCTGTTGACTCTTGTAATTATTTTGTTTCTCAAATTTCCCTCCCAGGTTGCAACTAGTGGTAGATTTGGCTGGAAGTTGGGACCATTTACTTTGCCTTGCCATCCCCGCCTCCACACCAACCACTCAAGATGTCTCTCCTTAAGCTGCTGAGCAATGATGGTTGATATGATATGATATGATATCAGGTCAGGTCATACACCACCATGATGCATCACAAATGGGCAATACATTGATCCTATTCCATGGCCACTTGCCAAAACAAAACGCTAAAAATAACATTAAAAAAAAAGGTTAAGCTATGCAGCAGCATTCAGCAGTTTCAATGCAGTGCATGGCATCATTTGTTGAAACTAAGGACTGGCCACGCATTTGTTGAAGCTTTATACAAAATATTGTGGCTGAAAGAAAGATAACAATGTGGACTTTTTGATGGTTGTGGTGGTGAGGGGTTTTTGGTTGTAAGTGACCAGCTTCGGGGTCCATGTAAAAATAGCATGACAGGGACTGGAGGTGTCTTGGTTCTGTTGGTGTTGTTGGGGAGGGGGTCTAGTTGAGGTCTAATAATGGAAAAAAAGGATAGTTAGGATAGTGTTGTGAATAAAAAATGAGTCCAGGCTTTGGTTTATGCTAACTTGTTCTTTTCCCAATTCAATTTGTTCACTCAGCTATTTTAGCTTAAGTTCAGCATTGAGAACAACACTTTGTGCATGTTCAGTTGTTTTTGCTCACTTTATCTTTTTAACGTTTTGAAAATAATTCTAAGCTATGATCATTACTTTCTTTTAAAG

Coding sequences of Glyma01g40900

Limit To All Plant Sequences

>Glyma01g40900.3   sequence type=CDS   gene model=Glyma01g40900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTGCACTGCCAATGATTTACAAGAATGGAAAGATTTCCCAAAGGGACTTAGAGTTCTTCTGCTTGAAGGAGATAGTAGTTCTGCTGCTGAGATAAGAGAACAACTTGAGGCCGTGGACTATAATGTTTCCACTTTCTACGATGAGAATGAAGCCTTGTCAGCACTCTCGAGTAGTCCTGAAGGCTTCCATGTTGCTATAGTGGAGGTGAGTACAAGCTGTAGCCTTGGAGGTTTCAAATTTCTTGAGAATTCAAAGGACTTGCCTACCATTATGACTTCAAAGGACCAGTGCCTGAACACCATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTTCTCAGTAAACCACTCTCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTTGTTCACAAGGCATTTAATGCTGGGGCAAATGTCCTGTCTGAATCACTAAAACCTGTCAAAGAATCTGTAGAATCCATGCTGCAGCTTCAAACAGAAAATGGACAAGATAAAAGTAGGATTTCAATTGATTTAGAAAATGTGTCGAGGTTTAGTGATATTGACCATGAGCAGTCTGCTGTATGTGATAAATATCCGGCTCCGTCAACCCCTCAATTAAAGCAGGGGACAAGGTTACTGGATGATGGAGATTGCCATGATCAGACTAATTGCTCAACAGAAAAAGAAAGTGTGGAACATGATGGGGAATGTAAATCTGTCGAAACTTTGTGTGAGAATTTGAATGCTGAAAGTTCTCCTCAACCAAGGGAACCTGATAAGACTCTGATTAAGGAGGAAGAGGATTTTGCCAATGGTTCCAGGGGTGAGAGTGCTGTTTCACTGAGTCCAAATAATAAAAAGTTTCTCAGCAATGCCGATGGTAATACATCTCCAAATAGAACGGGCGTACTTAATGATTCATGTGAGATTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACTCCTGAGCTACATAAAAAATTTGTGAAGGCTGTCGAACAACTAGGTATCGATCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAAGTGGAAGGCTTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATACACAAGAGACAAAGTGCACCCAGGGAAGAAGATCGGAAATGGCATAATCAAAGGGATGCAATGCAAAGGAACTATTATATGCAAAGACCAATCATGGCATACCCTCCATATCATTCAAATCACACCCTTTCTCCAGCTCCTATATATCCTATGTGGGGACAACCTGGTAGTCAAACAGCTGGTGTACAGATTTGGGGCCATCCTGGTTATCACATATGGCATCCTACAGAAAGTTGTCACTGGAAGCCTTATCAGGGGGTGCATGTGGATGCTTGGGGATGCCCATTGTTGCCAGCCCCTCAAGCTCCTTGTTTTCCTTACAATCAAAATATACCTGGATTGCACAATCCTAAAGCAGTGGACTATAGATTCGGCATGCCACAAAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTTGTGAAGGAAGCAATAAGCAAGCCATGGCTACCATTGCCCTTAGGACTCAAACCTCCTTCCATGGATAGTGTGTTGGCTGAGCTCTCCAAACAAGGCATTTCCGGCATCCCTCTTGGCAACAAGCGTTCTTCTACTCCTAAACTCCGCTGA

>Glyma01g40900.4   sequence type=CDS   gene model=Glyma01g40900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTGCACTGCCAATGATTTACAAGAATGGAAAGATTTCCCAAAGGGACTTAGAGTTCTTCTGCTTGAAGGAGATAGTAGTTCTGCTGCTGAGATAAGAGAACAACTTGAGGCCGTGGACTATAATGTTTCCACTTTCTACGATGAGAATGAAGCCTTGTCAGCACTCTCGAGTAGTCCTGAAGGCTTCCATGTTGCTATAGTGGAGGTGAGTACAAGCTGTAGCCTTGGAGGTTTCAAATTTCTTGAGAATTCAAAGGACTTGCCTACCATTATGACTTCAAAGGACCAGTGCCTGAACACCATGATGAAGTGCATTGCGCTTGGTGCAGTTGAGTTTCTCAGTAAACCACTCTCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTTGTTCACAAGGCATTTAATGCTGGGGCAAATGTCCTGTCTGAATCACTAAAACCTGTCAAAGAATCTGTAGAATCCATGCTGCAGCTTCAAACAGAAAATGGACAAGATAAAAGTAGGATTTCAATTGATTTAGAAAATGTGTCGAGGTTTAGTGATATTGACCATGAGCAGTCTGCTGTATGTGATAAATATCCGGCTCCGTCAACCCCTCAATTAAAGCAGGGGACAAGGTTACTGGATGATGGAGATTGCCATGATCAGACTAATTGCTCAACAGAAAAAGAAAGTGTGGAACATGATGGGGAATGTAAATCTGTCGAAACTTTGTGTGAGAATTTGAATGCTGAAAGTTCTCCTCAACCAAGGGAACCTGATAAGACTCTGATTAAGGAGGAAGAGGATTTTGCCAATGGTTCCAGGGGTGAGAGTGCTGTTTCACTGAGTCCAAATAATAAAAAGTTTCTCAGCAATGCCGATGGTAATACATCTCCAAATAGAACGGGCGTACTTAATGATTCATGTGAGATTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACTCCTGAGCTACATAAAAAATTTGTGAAGGCTGTCGAACAACTAGGTATCGATCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAAGTGGAAGGCTTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATACACAAGAGACAAAGTGCACCCAGGGAAGAAGATCGGAAATGGCATAATCAAAGGGATGCAATGCAAAGGAACTATTATATGCAAAGACCAATCATGGCATACCCTCCATATCATTCAAATCACACCCTTTCTCCAGCTCCTATATATCCTATGTGGGGACAACCTGGTAGTCAAACAGCTGGTGTACAGATTTGGGGCCATCCTGGTTATCACATATGGCATCCTACAGAAAGTTGTCACTGGAAGCCTTATCAGGGGGTGCATGTGGATGCTTGGGGATGCCCATTGTTGCCAGCCCCTCAAGCTCCTTGTTTTCCTTACAATCAAAATATACCTGGATTGCACAATCCTAAAGCAGTGGACTATAGATTCGGCATGCCACAAAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTTGTGAAGGAAGCAATAAGCAAGCCATGGCTACCATTGCCCTTAGGACTCAAACCTCCTTCCATGGATAGTGTGTTGGCTGAGCTCTCCAAACAAGGCATTTCCGGCATCCCTCTTGGCAACAAGCGTTCTTCTACTCCTAAACTCCGCTGA

Predicted protein sequences of Glyma01g40900

Limit To All Plant Sequences

>Glyma01g40900.3   sequence type=predicted peptide   gene model=Glyma01g40900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVCTANDLQEWKDFPKGLRVLLLEGDSSSAAEIREQLEAVDYNVSTFYDENEALSALSSSPEGFHVAIVEVSTSCSLGGFKFLENSKDLPTIMTSKDQCLNTMMKCIALGAVEFLSKPLSEDKLKNIWQHVVHKAFNAGANVLSESLKPVKESVESMLQLQTENGQDKSRISIDLENVSRFSDIDHEQSAVCDKYPAPSTPQLKQGTRLLDDGDCHDQTNCSTEKESVEHDGECKSVETLCENLNAESSPQPREPDKTLIKEEEDFANGSRGESAVSLSPNNKKFLSNADGNTSPNRTGVLNDSCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIHKRQSAPREEDRKWHNQRDAMQRNYYMQRPIMAYPPYHSNHTLSPAPIYPMWGQPGSQTAGVQIWGHPGYHIWHPTESCHWKPYQGVHVDAWGCPLLPAPQAPCFPYNQNIPGLHNPKAVDYRFGMPQSSFEHHPAEEVVDKVVKEAISKPWLPLPLGLKPPSMDSVLAELSKQGISGIPLGNKRSSTPKLR*

>Glyma01g40900.4   sequence type=predicted peptide   gene model=Glyma01g40900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVCTANDLQEWKDFPKGLRVLLLEGDSSSAAEIREQLEAVDYNVSTFYDENEALSALSSSPEGFHVAIVEVSTSCSLGGFKFLENSKDLPTIMTSKDQCLNTMMKCIALGAVEFLSKPLSEDKLKNIWQHVVHKAFNAGANVLSESLKPVKESVESMLQLQTENGQDKSRISIDLENVSRFSDIDHEQSAVCDKYPAPSTPQLKQGTRLLDDGDCHDQTNCSTEKESVEHDGECKSVETLCENLNAESSPQPREPDKTLIKEEEDFANGSRGESAVSLSPNNKKFLSNADGNTSPNRTGVLNDSCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIHKRQSAPREEDRKWHNQRDAMQRNYYMQRPIMAYPPYHSNHTLSPAPIYPMWGQPGSQTAGVQIWGHPGYHIWHPTESCHWKPYQGVHVDAWGCPLLPAPQAPCFPYNQNIPGLHNPKAVDYRFGMPQSSFEHHPAEEVVDKVVKEAISKPWLPLPLGLKPPSMDSVLAELSKQGISGIPLGNKRSSTPKLR*

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