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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G32440 | AT | Annotation by Michelle Graham. TAIR10: plastidial pyruvate kinase 3 | chr1:11712205-11714963 FORWARD LENGTH=571 | SoyBase | E_val: 0 | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004743 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyruvate kinase activity | SoyBase | N/A | ISS |
| GO:0030955 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: potassium ion binding | SoyBase | N/A | ISS |
| KOG2323 | KOG | Pyruvate kinase | JGI | ISS | |
| PTHR11817 | Panther | PYRUVATE KINASE | JGI | ISS | |
| PF00224 | PFAM | Pyruvate kinase, barrel domain | JGI | ISS | |
| PF02887 | PFAM | Pyruvate kinase, alpha/beta domain | JGI | ISS | |
| UniRef100_I1J9K9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pyruvate kinase n=2 Tax=Glycine max RepID=I1J9K9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J9K9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Pyruvate kinase n=2 Tax=Glycine max RepID=I1J9K9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma01g40860 not represented in the dataset |
Glyma01g40860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma11g04490 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g200200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma01g40860.3 sequence type=transcript gene model=Glyma01g40860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAAGTAGTAGGTATTTCCCTGACCACCAGAAGAATGGGACCTGGTTGGTTGAAAGTGGAGCGAAGAAAACTAACGGAGACTTGTTTGGAAGCTAGTCTCTGGTGAGAGTGAAGGCGCACCATCTTCACCTTGAAGTCAACGATCATGGCAACCATTAACCTTTCTTCCGCTACTACGTCTCTCTTCCAATCCAAACACCGAACGAAACGCATTCCACGCCTCCCTACAATCGCCAGAATAACAAACCACATCGAAGGAACTCATCTTAACTCCCCCAACGGCTCTCCCATCCTTGGCAACGCAAACAATTCCCTTGAGGTTCCCTCCAATAACTATATCTCGCTACACTCTTCAGACGTGCGTAGGAAAACTAAGATCGTGTGCACGATAGGTCCTTCTACGAGCTCACGTGATATGATATGGAACCTGGCTCAAGCTGGAATGAACGTGGCGCGTTTGAACATGTCGCATGGGGACCACGCCTCGCACCTCCAAACCATTGATTTGGTGAAAGAATACAATTCTCAGTTTCAAGATAAGGTTGTAGCCATCATGCTCGACACCAAGGGTCCTGAAGTTAGAAGTGGGGATGTAGCTCAACCTATTTTACTTAAAGAGGGACAAGAATTCTGTTTCACCACTATGAGAGGGGTTAGCACACATGACACGGTTAGCGTGAACTACGATGGCTTTGTGAATGATGTGGAGTTCGGAGATGTGTTGCTGGTTGATGGAGGAATGATGTCTCTTGCTGTTAAGTCAAAGACAAAAGACTTGGTTAAATGTGAAGTTATTGATGGTGGTGAACTGAAATCTAGGCGTCATTTAAATGTCCGTGGAAAAAGTGCAACACTTCCTTCCATAACTGACAAGGACTGGGAAGATATCAAGTTTGGGGTGGACAATCAAGTAGACTTCTTTGCTGTCTCATTTGTCAAGGATGCTAGAGTGGTGCACGAGTTAAAACACTACCTCAAAAGTCATAATGCCGATATACACGTGATTGTAAAAATTGAAAGTGCAGATTCCATACCAAATCTCCATTCGATACTTTCTGCTTCAGATGGGGCCATGGTCGCTCGTGGGGATCTTGGAGCTGAACTTCCAATAGAGGAAGTTCCTTTATTGCAGGAAGACATCATTCGAAGATGTCAAATTATGCAAAAGCCTGTTATTGTGGCAACAAATATGCTTGAAAGCATGATTAATCATCCCACACCAACAAGGGCAGAAGTTTCAGACATCGCAATTGCAGTAAGACAAGGTGCTGATGCTATCATGCTTTCAGGAGAAACTGCACATGGAAAATTTCCATTGAAAGCTGTTAAAGTTATGCACACGGTGGCTCTTAGGAATGAATCCAGTGTTCAAAGTGGTGTTTCTTATCCGAGTCAACTGAGTTCCCATGAAAGTCATATGGGAGAAATGTTTGCTTTCCATGCGACAACAATGTCTAACACTCTTAATACTCCTATTATTGTTTTCACCAGAACAGGATCCATGGCAATTCTTTTGAGCCATTATAGGCCTTACTCAACAATCTTTGCATTCACAAATGAGTAAGTATTAGCAGGATGTGTGCTTTTATACAGAAATTATTTGTCTGAAGGCCACCCAACATAGTGTTTTTTTTGTCCTTTCTGCTTTCTAATTTTTGGAGGGTGTTAAGTATAGTTGCTTAAGTTAATGTTCTATTTATTGGGAAAACTCAGACTTTCCCGCTTCGTGAAGTTAAGATAGGCACTTAGTAATTAAAGGTAGTAATGAGAGCACACGATTATAATTCTCCAATATGGAGATTCTTCCATTATACAAAATGATAGTAGGGTTACAAGGATGTGTTTACAAAATTGACTCACTCTATGGTGGCTAACTCAAGCGATTCCCAAGCTATTTATCTTCTCTCTCAGAGAGGCTCTCTACTTGGATTGACTCACTTTACGGTGGCTCACTCAAGCTTGAGGATAAAGACTTCCCAAGCTATTTATCTTCTCTCTCAGAGAGGCTCTCTACTTGGATTGACTCACTCTACGATGGCTCACTCAAGCTTGAGGATAAAGACTTCCCAAGCTATTTATCTTCTCTCTCAGAGAGGCTTTTTCTCACTCTAAGAAGTGGATTCACTCTTGTCTTGGATGGATAGGAATGAAGGCTCCTACCCTTATTTATACTACTCCACCTCCACAATGAATGGTGGAGATTACTTGTATCCTAGGGTGGAGACTAATTCTCTAGAATGCTCCACACATTCTAGGAGTCTTTATACTCTTCTACTCTCTTCCATACTTTTTCATAAGGTTCCAGAAGATTTCACACATCTCTAGAATATTTCAGAGGTTTCCGCATTTTTCCACAAGCTTCTAGAGAGTTCTACACTACTCTAGAGTTCTCCAGAACGTTCTAGAAAATTCTACACTTTTCCAGAAAGCTCCAGAATTTTCTAGAACCTCTCCAATTAAGGAGGGATCCCAACACTATTGCACCCACAAATTTATGATTTCTCTATTTGCAGAGCAAGAATTAAGCAGAGGTTGGCGCTTTATCATGGGGTTATGTCCATATACATGCAATTTTCAAATGATGTAGAAGAGACCTTCTCTAGAGCCCTCAAGCTACTATTGAGTAAGAGTCATTTACACGAGGGACAACATGTCACACTTGTTCAAAGTGGAGCACAACCAATCTGGCGTGAGGAATCCACTCACCACATACAAGTTCGCAAGGTTCATGGATAAAATTCTATGAAGGATCTTTGTTCCTCATAAGTGTACAGTTTTTTTCCCCACTATCTTGTAACTATTCATAGTAATGGCTATTCACTATCTTGTAACTATTCATAGTTATGACTATTATGCACTTGAAACACCAAAGTTGGATAGTAAAGGAATTTTCATAATGCAAATAGTGATTTATTGATAAGGAATTGCCATAGCCTCCATGAAGCTCTTTAATAACTATCTATTTTCTT
>Glyma01g40860.2 sequence type=CDS gene model=Glyma01g40860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAACCATTAACCTTTCTTCCGCTACTACGTCTCTCTTCCAATCCAAACACCGAACGAAACGCATTCCACGCCTCCCTACAATCGCCAGAATAACAAACCACATCGAAGGAACTCATCTTAACTCCCCCAACGGCTCTCCCATCCTTGGCAACGCAAACAATTCCCTTGAGGTTCCCTCCAATAACTATATCTCGCTACACTCTTCAGACGTGCGTAGGAAAACTAAGATCGTGTGCACGATAGGTCCTTCTACGAGCTCACGTGATATGATATGGAACCTGGCTCAAGCTGGAATGAACGTGGCGCGTTTGAACATGTCGCATGGGGACCACGCCTCGCACCTCCAAACCATTGATTTGGTGAAAGAATACAATTCTCAGTTTCAAGATAAGGTTGTAGCCATCATGCTCGACACCAAGGGTCCTGAAGTTAGAAGTGGGGATGTAGCTCAACCTATTTTACTTAAAGAGGGACAAGAATTCTGTTTCACCACTATGAGAGGGGTTAGCACACATGACACGGTTAGCGTGAACTACGATGGCTTTGTGAATGATGTGGAGTTCGGAGATGTGTTGCTGGTTGATGGAGGAATGATGTCTCTTGCTGTTAAGTCAAAGACAAAAGACTTGGTTAAATGTGAAGTTATTGATGGTGGTGAACTGAAATCTAGGCGTCATTTAAATGTCCGTGGAAAAAGTGCAACACTTCCTTCCATAACTGACAAGGACTGGGAAGATATCAAGTTTGGGGTGGACAATCAAGTAGACTTCTTTGCTGTCTCATTTGTCAAGGATGCTAGAGTGGTGCACGAGTTAAAACACTACCTCAAAAGTCATAATGCCGATATACACGTGATTGTAAAAATTGAAAGTGCAGATTCCATACCAAATCTCCATTCGATACTTTCTGCTTCAGATGGGGCCATGGTCGCTCGTGGGGATCTTGGAGCTGAACTTCCAATAGAGGAAGTTCCTTTATTGCAGGAAGACATCATTCGAAGATGTCAAATTATGCAAAAGCCTGTTATTGTGGCAACAAATATGCTTGAAAGCATGATTAATCATCCCACACCAACAAGGGCAGAAGTTTCAGACATCGCAATTGCAGTAAGACAAGGTGCTGATGCTATCATGCTTTCAGGAGAAACTGCACATGGAAAATTTCCATTGAAAGCTGTTAAAGTTATGCACACGGTGGCTCTTAGGAATGAATCCAGTGTTCAAAGTGGTGTTTCTTATCCGAGTCAACTGAGTTCCCATGAAAGTCATATGGGAGAAATGTTTGCTTTCCATGCGACAACAATGTCTAACACTCTTAATACTCCTATTATTGTTTTCACCAGAACAGGATCCATGGCAATTCTTTTGAGCCATTATAGGCCTTACTCAACAATCTTTGCATTCACAAATGAAGCAAGAATTAAGCAGAGGTTGGCGCTTTATCATGGGGTTATGTCCATATACATGCAATTTTCAAATGATGTAGAAGAGACCTTCTCTAGAGCCCTCAAGCTACTATTGAGTAAGAGTCATTTACACGAGGGACAACATGTCACACTTGTTCAAAGTGGAGCACAACCAATCTGGCGTGAGGAATCCACTCACCACATACAAGTTCGCAAGGTTCATGGATAA >Glyma01g40860.3 sequence type=CDS gene model=Glyma01g40860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAACCATTAACCTTTCTTCCGCTACTACGTCTCTCTTCCAATCCAAACACCGAACGAAACGCATTCCACGCCTCCCTACAATCGCCAGAATAACAAACCACATCGAAGGAACTCATCTTAACTCCCCCAACGGCTCTCCCATCCTTGGCAACGCAAACAATTCCCTTGAGGTTCCCTCCAATAACTATATCTCGCTACACTCTTCAGACGTGCGTAGGAAAACTAAGATCGTGTGCACGATAGGTCCTTCTACGAGCTCACGTGATATGATATGGAACCTGGCTCAAGCTGGAATGAACGTGGCGCGTTTGAACATGTCGCATGGGGACCACGCCTCGCACCTCCAAACCATTGATTTGGTGAAAGAATACAATTCTCAGTTTCAAGATAAGGTTGTAGCCATCATGCTCGACACCAAGGGTCCTGAAGTTAGAAGTGGGGATGTAGCTCAACCTATTTTACTTAAAGAGGGACAAGAATTCTGTTTCACCACTATGAGAGGGGTTAGCACACATGACACGGTTAGCGTGAACTACGATGGCTTTGTGAATGATGTGGAGTTCGGAGATGTGTTGCTGGTTGATGGAGGAATGATGTCTCTTGCTGTTAAGTCAAAGACAAAAGACTTGGTTAAATGTGAAGTTATTGATGGTGGTGAACTGAAATCTAGGCGTCATTTAAATGTCCGTGGAAAAAGTGCAACACTTCCTTCCATAACTGACAAGGACTGGGAAGATATCAAGTTTGGGGTGGACAATCAAGTAGACTTCTTTGCTGTCTCATTTGTCAAGGATGCTAGAGTGGTGCACGAGTTAAAACACTACCTCAAAAGTCATAATGCCGATATACACGTGATTGTAAAAATTGAAAGTGCAGATTCCATACCAAATCTCCATTCGATACTTTCTGCTTCAGATGGGGCCATGGTCGCTCGTGGGGATCTTGGAGCTGAACTTCCAATAGAGGAAGTTCCTTTATTGCAGGAAGACATCATTCGAAGATGTCAAATTATGCAAAAGCCTGTTATTGTGGCAACAAATATGCTTGAAAGCATGATTAATCATCCCACACCAACAAGGGCAGAAGTTTCAGACATCGCAATTGCAGTAAGACAAGGTGCTGATGCTATCATGCTTTCAGGAGAAACTGCACATGGAAAATTTCCATTGAAAGCTGTTAAAGTTATGCACACGGTGGCTCTTAGGAATGAATCCAGTGTTCAAAGTGGTGTTTCTTATCCGAGTCAACTGAGTTCCCATGAAAGTCATATGGGAGAAATGTTTGCTTTCCATGCGACAACAATGTCTAACACTCTTAATACTCCTATTATTGTTTTCACCAGAACAGGATCCATGGCAATTCTTTTGAGCCATTATAGGCCTTACTCAACAATCTTTGCATTCACAAATGAGTAA
>Glyma01g40860.2 sequence type=predicted peptide gene model=Glyma01g40860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATINLSSATTSLFQSKHRTKRIPRLPTIARITNHIEGTHLNSPNGSPILGNANNSLEVPSNNYISLHSSDVRRKTKIVCTIGPSTSSRDMIWNLAQAGMNVARLNMSHGDHASHLQTIDLVKEYNSQFQDKVVAIMLDTKGPEVRSGDVAQPILLKEGQEFCFTTMRGVSTHDTVSVNYDGFVNDVEFGDVLLVDGGMMSLAVKSKTKDLVKCEVIDGGELKSRRHLNVRGKSATLPSITDKDWEDIKFGVDNQVDFFAVSFVKDARVVHELKHYLKSHNADIHVIVKIESADSIPNLHSILSASDGAMVARGDLGAELPIEEVPLLQEDIIRRCQIMQKPVIVATNMLESMINHPTPTRAEVSDIAIAVRQGADAIMLSGETAHGKFPLKAVKVMHTVALRNESSVQSGVSYPSQLSSHESHMGEMFAFHATTMSNTLNTPIIVFTRTGSMAILLSHYRPYSTIFAFTNEARIKQRLALYHGVMSIYMQFSNDVEETFSRALKLLLSKSHLHEGQHVTLVQSGAQPIWREESTHHIQVRKVHG* >Glyma01g40860.3 sequence type=predicted peptide gene model=Glyma01g40860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MATINLSSATTSLFQSKHRTKRIPRLPTIARITNHIEGTHLNSPNGSPILGNANNSLEVPSNNYISLHSSDVRRKTKIVCTIGPSTSSRDMIWNLAQAGMNVARLNMSHGDHASHLQTIDLVKEYNSQFQDKVVAIMLDTKGPEVRSGDVAQPILLKEGQEFCFTTMRGVSTHDTVSVNYDGFVNDVEFGDVLLVDGGMMSLAVKSKTKDLVKCEVIDGGELKSRRHLNVRGKSATLPSITDKDWEDIKFGVDNQVDFFAVSFVKDARVVHELKHYLKSHNADIHVIVKIESADSIPNLHSILSASDGAMVARGDLGAELPIEEVPLLQEDIIRRCQIMQKPVIVATNMLESMINHPTPTRAEVSDIAIAVRQGADAIMLSGETAHGKFPLKAVKVMHTVALRNESSVQSGVSYPSQLSSHESHMGEMFAFHATTMSNTLNTPIIVFTRTGSMAILLSHYRPYSTIFAFTNE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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