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Report for Sequence Feature Glyma01g40810

Feature Type:gene_model
Chromosome:Gm01
Start:52462413
stop:52464298
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma01g40810
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35370AT Annotation by Michelle Graham. TAIR10: glycine decarboxylase complex H | chr2:14891239-14892050 FORWARD LENGTH=165 SoyBaseE_val: 2.00E-92ISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006546GO-bp Annotation by Michelle Graham. GO Biological Process: glycine catabolic process SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009657GO-bp Annotation by Michelle Graham. GO Biological Process: plastid organization SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0009814GO-bp Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0010207GO-bp Annotation by Michelle Graham. GO Biological Process: photosystem II assembly SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0019464GO-bp Annotation by Michelle Graham. GO Biological Process: glycine decarboxylation via glycine cleavage system SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043085GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005960GO-cc Annotation by Michelle Graham. GO Cellular Compartment: glycine cleavage complex SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0004375GO-mf Annotation by Michelle Graham. GO Molecular Function: glycine dehydrogenase (decarboxylating) activity SoyBaseN/AISS
KOG3373 KOG Glycine cleavage system H protein (lipoate-binding) JGI ISS
PTHR11715Panther GLYCINE CLEAVAGE SYSTEM H PROTEIN JGI ISS
PF01597PFAM Glycine cleavage H-protein JGI ISS
UniRef100_C6T0B7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T0B7_SOYBN SoyBaseE_val: 9.00E-146ISS
UniRef100_Q39732UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glycine cleavage system H protein, mitochondrial n=1 Tax=Flaveria anomala RepID=GCSH_FLAAN SoyBaseE_val: 4.00E-98ISS

Expression Patterns of Glyma01g40810
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g40810 not represented in the dataset
Glyma01g40810 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g40810
ParalogEvidenceComments
Glyma11g04530 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g40810 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g199700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma01g40810
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma01g40810
>Glyma01g40810.2   sequence type=transcript   gene model=Glyma01g40810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGATGAGGCATTCGCTGCCCACCATTCATCGAAGATAAACTTTGAAATTAAAAAAAACATATATGAAGAGCTCATCATATTGTTTCAGTGATATATTATCCCTACAACGTAATAATAACCAAAACAGCAGAGAGAAGAGAAGGTGTAGACAAACACAATCTCTAATGGCACTCAGGATGTGGGCTTCTTCCACTGCCAATGCACTCAAAGTCTCTTCTACCTCCAGACCTCATCTCTTGCATCCTTTTTCTTTCTCCAGATGCTTGTCTTCCGTCTTGGATGGACTTAAGTATGCAGATTCACACGAATGGGTCAAGCACGAAGGCTCAGTCGCCACCATTGGTATCACTGACCATGCCCAGGACCATCTTGGAGAGGTTGTGTATGTGGAGCTGCCAGAATCAGGTGGCACAGTTACCCAGAAGTCTGGCTTCGGAGCCGTTGAAAGTGTTAAAGCAACAAGTGACATAAACTCTCCAATCTCGGGGGAGATTGTTGAGGTTAACAAAAAGCTCACAGAGACACCTGGCCTGGTGATCAATTCTAACTTTTAACCCAATATCTCTGTACTATGTATTTGGTCTAAGGAGAACTTTTGTTGCAAAAACTAAAAAAATTGAAAACTTGCGTGAGGTTACTTATTACAATGCACTGTTAGGGTAACAATTTTTAGATTATCAACTTATAAGAAATTATGTTAGGTATAACATTTAAAGTCAACAAAATTATTGTACATATAATTTCTTGATCGACTTGACAGTGTAAAAGTGTTACACTATCGGCCTATATACTATTTACTCTTATACATGCATGGCTGTTTATTTTGATATTGATGATTTGAATTACACTGTTGAATTGCATTGTCTTCTAATCAGCAGCTTATATACATGCTCATAATTATTTTATTTTTCTACTTTTCCCACTTTAAGGTCAACTCAAGCCCATACGAAGATGGATGGATGATCAAAGTAAAGCCAAGTGATCCATCTGAATTAGATTCCTTGATGGGTCCAAAAGAGTACACAAAATTTTGTGAAGAAGAAGATGCTAGTCATTAAAGTTTGAATTGAATTGGTTCCTGCAGTTATATGTGGGACTGACTGTTCTTTACATGTTTATGATTTTATTATCTTCTGAACAGTTTTTTAATATGCAATATAACTGGTTCTTTCCGTTTTCTCTTCCCCTTCTATTGTCTTTTGTCACCGACACTTCAGTGTGTCTACATTCTAATTTCTTAAAAGAACAGAGCTCATTAATATTATGTTTGAAGCAAGCTTTAGAAG
Coding sequences of Glyma01g40810
>Glyma01g40810.1   sequence type=CDS   gene model=Glyma01g40810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGCTCATCATATTGTTTCAGTGATATATTATCCCTACAACGTAATAATAACCAAAACAGCAGAGAGAAGAGAAGGTGTAGACAAACACAATCTCTAATGGCACTCAGGATGTGGGCTTCTTCCACTGCCAATGCACTCAAAGTCTCTTCTACCTCCAGACCTCATCTCTTGCATCCTTTTTCTTTCTCCAGATGCTTGTCTTCCGTCTTGGATGGACTTAAGTATGCAGATTCACACGAATGGGTCAAGCACGAAGGCTCAGTCGCCACCATTGGTATCACTGACCATGCCCAGGACCATCTTGGAGAGGTTGTGTATGTGGAGCTGCCAGAATCAGGTGGCACAGTTACCCAGAAGTCTGGCTTCGGAGCCGTTGAAAGTGTTAAAGCAACAAGTGACATAAACTCTCCAATCTCGGGGGAGATTGTTGAGGTTAACAAAAAGCTCACAGAGACACCTGGCCTGGTCAACTCAAGCCCATACGAAGATGGATGGATGATCAAAGTAAAGCCAAGTGATCCATCTGAATTAGATTCCTTGATGGGTCCAAAAGAGTACACAAAATTTTGTGAAGAAGAAGATGCTAGTCATTAA

>Glyma01g40810.2   sequence type=CDS   gene model=Glyma01g40810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAGCTCATCATATTGTTTCAGTGATATATTATCCCTACAACGTAATAATAACCAAAACAGCAGAGAGAAGAGAAGGTGTAGACAAACACAATCTCTAATGGCACTCAGGATGTGGGCTTCTTCCACTGCCAATGCACTCAAAGTCTCTTCTACCTCCAGACCTCATCTCTTGCATCCTTTTTCTTTCTCCAGATGCTTGTCTTCCGTCTTGGATGGACTTAAGTATGCAGATTCACACGAATGGGTCAAGCACGAAGGCTCAGTCGCCACCATTGGTATCACTGACCATGCCCAGGACCATCTTGGAGAGGTTGTGTATGTGGAGCTGCCAGAATCAGGTGGCACAGTTACCCAGAAGTCTGGCTTCGGAGCCGTTGAAAGTGTTAAAGCAACAAGTGACATAAACTCTCCAATCTCGGGGGAGATTGTTGAGGTTAACAAAAAGCTCACAGAGACACCTGGCCTGGTGATCAATTCTAACTTTTAA
Predicted protein sequences of Glyma01g40810
>Glyma01g40810.1   sequence type=predicted peptide   gene model=Glyma01g40810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSSSYCFSDILSLQRNNNQNSREKRRCRQTQSLMALRMWASSTANALKVSSTSRPHLLHPFSFSRCLSSVLDGLKYADSHEWVKHEGSVATIGITDHAQDHLGEVVYVELPESGGTVTQKSGFGAVESVKATSDINSPISGEIVEVNKKLTETPGLVNSSPYEDGWMIKVKPSDPSELDSLMGPKEYTKFCEEEDASH*

>Glyma01g40810.2   sequence type=predicted peptide   gene model=Glyma01g40810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSSSYCFSDILSLQRNNNQNSREKRRCRQTQSLMALRMWASSTANALKVSSTSRPHLLHPFSFSRCLSSVLDGLKYADSHEWVKHEGSVATIGITDHAQDHLGEVVYVELPESGGTVTQKSGFGAVESVKATSDINSPISGEIVEVNKKLTETPGLVINSNF*






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