Glyma01g40600 - SoyBase

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Report for Sequence Feature Glyma01g40600

Feature Type:	gene_model
Chromosome:	Gm01
Start:	52302934
stop:	52305614
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g40600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37850	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr4:17796362-17797647 REVERSE LENGTH=328	SoyBase	E_val: 2.00E-54	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR12565	Panther	STEROL REGULATORY ELEMENT-BINDING PROTEIN	JGI		ISS
PTHR12565:SF7	Panther	CENTROMERE-BINDING PROTEIN 1, CBP-1	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7K134	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BHLH transcription factor n=1 Tax=Medicago truncatula RepID=G7K134_MEDTR	SoyBase	E_val: 3.00E-99	ISS
UniRef100_UPI00023378C1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023378C1 related cluster n=1 Tax=unknown RepID=UPI00023378C1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g40600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g40600

Paralog	Evidence	Comments
Glyma11g04690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g40600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g197900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g40600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g40600

Limit To All Plant Sequences

>Glyma01g40600.3   sequence type=transcript   gene model=Glyma01g40600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTAATCTCTCTCTTCAATCTTCATCCTCTCGATCCGTCTTCTAATTTTCCAGTCAAGTGCCCTACACTACATCACATCAAATTAGTAGTAATTTCAAGAAAGATCATGGAAATTGCGTACAACTACTACTTGCCTGAACTTGAAATTGAGGATCCAACCTTCTTTGATCAATACCAGATGGATTCATTTGCTTGTCCACTTGATGACTTTGACTTTGAGTCTTTCTCCGGTTCCCCTGAGAGCAACTCCTCATATCATTTCAACTCCGAAAGCACACCAAATTGTTTCCCAGCTGAAAGTCATGATCAGTCTTTTACCCCTGCAAGACCAACCAAGAGGCTCAAGAACACTTGTGCCAGTGACTTCATTTCCCACAAGGTTTCTGCTTTTTCATCCTCCCAACTTATTTCCTTTGGGCACTTCAATGCCCCGTCACCATCACATGCTTCCCAGCAATTTCAAAACCTGGACTTCGATGAGAAAGCGTCTAGTGAGAACATGGATTTTGCAGCTTTCGTTTCTCAGGGTTCGTATGAGGACAAAAGTTTCCTAAGTTCTGATAATAGAACGAACCAGGTTGGCATAACCACTAGGAACCCAATCCAAGCTCAAGAGCACATAATAGCTGAAAGAAAACGAAGGGAAAATATCAGCAAGAGGTTCATCGCTCTTTCCGCTATCCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTGTCAAGTATGTGAAACAACTACAAGAACGTGTGCAAACTCTGGAGGAGCAAGCAGCGAAGAGAACACTTGGATCGGGAGTGCTGGTGAAAAGATCTATTATCTTCGCTGATGATGAAACTTCTGACAGCCACTGTGAGCATTCACTCCCCGAAGTCGAAGTCAGGGTTTCTGGGAAAGACGTACTCATCAGAACTCAATGCGACAAACACAGTGGACATGCTGCAATGATACTCAGCGAATTAGAAAAGCTTTACTTCATTGTCCAGAGTAGCAGCTTTTTGCCCTTCGGCAATAGCAAAACTGATGTCACTATTATTGCTCAGATGAACAAGGAAAACTGCATGACAGCAAAGGATCTCCTAGGAAGGTTGCGACAGGCTTTGGTCGGGCATAACTAGTTCAAGGAATTTATGTCTATGATGTGCATGATTACAAGAATAAGTTTAGTCAATAATGATTTTTATCGCAGTGCTTTATTTTTCCTTTTTCGTCCATGATGTGGATTCTGGAGTTACATATCAAGGGCCTGCGAGTATCTGTTTACATAGGACTTACATGGAGTTGTTCATTCTGCTGTGAGGTGTGGGGAGTTTCAACAGAAACAACACATGATGCCAAAGTGTTTTTTTTCTGTTGCTTTTTGCGTAGTTGATTGGTCGGCTATGTTGCCCTACACCAGAATAGCATTTTCAAATCTCAGTAGTTTTTTTCCCTCTCATTAAGAAGGATTTTTGAGAGGCTTTGACTTATAGATCACCTCTTTCTTCTCTGTTTCCCTGTTGTGAAAAAGGGTTCCGGTTTGATAGAAGCTAAATGCCGAGCACTTATTTAAATTTGTTTCTCTTGTCGTTTTGTGTTCTCTTACTTCTCTATAAAATTCTTCTGGTTGTAATAGCGACAAGTTGATTTTTTTTTTCTTTTTTAAAATATATATTGTATGGTTTGGTTGCAGATCTTTTTATTTGGGTCAAGGTATATATCTTGCTTAGAATATTCATTCATGTATATATTGTGTGAAAAATGATGGGTGTGTACCCAAATGCACAGTTAGAAAGAT

Coding sequences of Glyma01g40600

Limit To All Plant Sequences

>Glyma01g40600.2   sequence type=CDS   gene model=Glyma01g40600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATTGCGTACAACTACTACTTGCCTGAACTTCAGGAAATTGAGGATCCAACCTTCTTTGATCAATACCAGATGGATTCATTTGCTTGTCCACTTGATGACTTTGACTTTGAGTCTTTCTCCGGTTCCCCTGAGAGCAACTCCTCATATCATTTCAACTCCGAAAGCACACCAAATTGTTTCCCAGCTGAAAGTCATGATCAGTCTTTTACCCCTGCAAGACCAACCAAGAGGCTCAAGAACACTTGTGCCAGTGACTTCATTTCCCACAAGGTTTCTGCTTTTTCATCCTCCCAACTTATTTCCTTTGGGCACTTCAATGCCCCGTCACCATCACATGCTTCCCAGCAATTTCAAAACCTGGACTTCGATGAGAAAGCGTCTAGTGAGAACATGGATTTTGCAGCTTTCGTTTCTCAGGGTTCGTATGAGGACAAAAGTTTCCTAAGTTCTGATAATAGAACGAACCAGGTTGGCATAACCACTAGGAACCCAATCCAAGCTCAAGAGCACATAATAGCTGAAAGAAAACGAAGGGAAAATATCAGCAAGAGGTTCATCGCTCTTTCCGCTATCCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTGTCAAGTATGTGAAACAACTACAAGAACGTGTGCAAACTCTGGAGGAGCAAGCAGCGAAGAGAACACTTGGATCGGGAGTGCTGGTGAAAAGATCTATTATCTTCGCTGATGATGAAACTTCTGACAGCCACTGTGAGCATTCACTCCCCGAAGTCGAAGTCAGGGTTTCTGGGAAAGACGTACTCATCAGAACTCAATGCGACAAACACAGTGGACATGCTGCAATGATACTCAGCGAATTAGAAAAGCTTTACTTCATTGTCCAGAGTAGCAGCTTTTTGCCCTTCGGCAATAGCAAAACTGATGTCACTATTATTGCTCAGATGAACAAGGAAAACTGCATGACAGCAAAGGATCTCCTAGGAAGGTTGCGACAGGCTTTGGTCGGGCATAACTAG

>Glyma01g40600.3   sequence type=CDS   gene model=Glyma01g40600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAATTGCGTACAACTACTACTTGCCTGAACTTGAAATTGAGGATCCAACCTTCTTTGATCAATACCAGATGGATTCATTTGCTTGTCCACTTGATGACTTTGACTTTGAGTCTTTCTCCGGTTCCCCTGAGAGCAACTCCTCATATCATTTCAACTCCGAAAGCACACCAAATTGTTTCCCAGCTGAAAGTCATGATCAGTCTTTTACCCCTGCAAGACCAACCAAGAGGCTCAAGAACACTTGTGCCAGTGACTTCATTTCCCACAAGGTTTCTGCTTTTTCATCCTCCCAACTTATTTCCTTTGGGCACTTCAATGCCCCGTCACCATCACATGCTTCCCAGCAATTTCAAAACCTGGACTTCGATGAGAAAGCGTCTAGTGAGAACATGGATTTTGCAGCTTTCGTTTCTCAGGGTTCGTATGAGGACAAAAGTTTCCTAAGTTCTGATAATAGAACGAACCAGGTTGGCATAACCACTAGGAACCCAATCCAAGCTCAAGAGCACATAATAGCTGAAAGAAAACGAAGGGAAAATATCAGCAAGAGGTTCATCGCTCTTTCCGCTATCCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTGTCAAGTATGTGAAACAACTACAAGAACGTGTGCAAACTCTGGAGGAGCAAGCAGCGAAGAGAACACTTGGATCGGGAGTGCTGGTGAAAAGATCTATTATCTTCGCTGATGATGAAACTTCTGACAGCCACTGTGAGCATTCACTCCCCGAAGTCGAAGTCAGGGTTTCTGGGAAAGACGTACTCATCAGAACTCAATGCGACAAACACAGTGGACATGCTGCAATGATACTCAGCGAATTAGAAAAGCTTTACTTCATTGTCCAGAGTAGCAGCTTTTTGCCCTTCGGCAATAGCAAAACTGATGTCACTATTATTGCTCAGATGAACAAGGAAAACTGCATGACAGCAAAGGATCTCCTAGGAAGGTTGCGACAGGCTTTGGTCGGGCATAACTAG

Predicted protein sequences of Glyma01g40600

Limit To All Plant Sequences

>Glyma01g40600.2   sequence type=predicted peptide   gene model=Glyma01g40600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIAYNYYLPELQEIEDPTFFDQYQMDSFACPLDDFDFESFSGSPESNSSYHFNSESTPNCFPAESHDQSFTPARPTKRLKNTCASDFISHKVSAFSSSQLISFGHFNAPSPSHASQQFQNLDFDEKASSENMDFAAFVSQGSYEDKSFLSSDNRTNQVGITTRNPIQAQEHIIAERKRRENISKRFIALSAILPGLKKMDKASVLGDAVKYVKQLQERVQTLEEQAAKRTLGSGVLVKRSIIFADDETSDSHCEHSLPEVEVRVSGKDVLIRTQCDKHSGHAAMILSELEKLYFIVQSSSFLPFGNSKTDVTIIAQMNKENCMTAKDLLGRLRQALVGHN*

>Glyma01g40600.3   sequence type=predicted peptide   gene model=Glyma01g40600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIAYNYYLPELEIEDPTFFDQYQMDSFACPLDDFDFESFSGSPESNSSYHFNSESTPNCFPAESHDQSFTPARPTKRLKNTCASDFISHKVSAFSSSQLISFGHFNAPSPSHASQQFQNLDFDEKASSENMDFAAFVSQGSYEDKSFLSSDNRTNQVGITTRNPIQAQEHIIAERKRRENISKRFIALSAILPGLKKMDKASVLGDAVKYVKQLQERVQTLEEQAAKRTLGSGVLVKRSIIFADDETSDSHCEHSLPEVEVRVSGKDVLIRTQCDKHSGHAAMILSELEKLYFIVQSSSFLPFGNSKTDVTIIAQMNKENCMTAKDLLGRLRQALVGHN*

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