Glyma01g40540 - SoyBase

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Report for Sequence Feature Glyma01g40540

Feature Type:	gene_model
Chromosome:	Gm01
Start:	52252519
stop:	52255898
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g40540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_I1J9I0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9I0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g40540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g40540

Paralog	Evidence	Comments
Glyma11g04762	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g40540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g197400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g40540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g40540

Limit To All Plant Sequences

>Glyma01g40540.3   sequence type=transcript   gene model=Glyma01g40540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGGTAAATAGAAAGAAACACAGGAACTGAGAAATAAAGAGAAAGAAAAAAGCTGTGAATGCTCATGCGGATTCTCAGGGTTTTAATCTCGGAAGCATAGTTGCTGCTTCCCGCTTAGCGTATCCTTGCATTGTAGGTTCTAGCAGTAACACGGACTTATATCCCTCACTGTAAGGAAGGTTTCAGGCAAAATAATCGTTTTCATTTTATTTTTTTTAATTGCAACCTATGGAAGATAAAAACAAGGAACATGAATCCGGTTTCGTTTGTAATCAAGAATCTCAGACAAATAATGAACCTCAGGTATGGAACTCTCGTTTTTCTGATCAATCTTTTGCGGCTTTACAAATTCAGCTTCTTGTGAAGCCTTTTTCTATTTTATTTTTGTTCCCCCTTTCTTTTTTTCCCTGTTTTTTTCTGGCTTAGTTCTTTGTTAATACAATCACAGAATAACAGAGGCTAGATATGAATATCAGTCTTAGGAACGGTGGAAAGAAAAGTAGGAATGCAATTTGAACTAAAAAGAAAATGAAAAGAAAGTAAAGATTGAATAAATTTTTACTTTTAAAAATTCATTTTTTTCCCTCTTTGGCTTCAAAAACACACATTATGATATCTACTACTTTTCTTCTATCTTAGGGTTCTCATCTTTTTAATTGGAATCATATGTAAAGGAGTAGCATGAATACCTCAAATATGAAGAATCATAAAAACCAATTTCAGTTGTTTAAATAGTCCTTTTGAGTTTATTTAGATGAATATGATGATTAACAGCACAACCAAGAGAATGCACAGCCAAATGTGACTGTTGGTCCTATTGCCAAAATTAGTAGTCCCTCACCTTCACATGACAGCATGCCCAACTCAAATCAGCAACAACAACCTCCAATTGTTCAATGGCCTTGTACTCCTCAAAATGCCACAGAACAGTTCTTGACAATGCACTTCCCCACCCAAGCATCACCACCTGGTGCCTTAAATCAATGGCAGCAGTTTCAATATCAGCAGGTATTTGCACAGACAGCATCATCCTTTTGGCAACCGCAACCGCCAGGAGCAAATGTCCCTTCATTCTTTCAGCCCTTTACTGATACTGGCTTTCAAGGAGGACCTTCCTCAACAATACAGACACTACTTCCCAATATGTCTTGCCATTACACATTTCCTGGCTTTCCACCATCCTTATGTTTTCAGTTTTCCTGGTGCACCTAACTTTTCTTCAGCAACTCCTAAGGTGCCTGATCGCTTAGCTTCTGTAGAGCATTCTTCCCAAAATGGAATTATGAGACCACCTTCAAAACTTTCTCAGAAGCATCAACAACTTTGGGAAGCTCAGTCAGCGGAGAATGTTAAGCTGTGGAGTGTGATAAATAAATTGCAAGCTGAAGTTTCTGATTACAATGATCGGCTGAAGAAGCTTGAAGAAGAAGTATCCTCGTTCAAAAAGAAAGCAGAAGTGCCCACTAACAAAGTTATTGGGACAATTCCTGTATTAACAGTGCAACCAAAAAAGAGAGGAGGGCCTAAGAGATCATTGGCTTCAGTGGATCCATCATATGAGTCTCACCTCCCAGCTGGCGGTAAAAAGCCTGCACTAAGTAACTATCTGTATCAGAGTAAATCACCCTTTGGAGCAGTTAAATCACCCATTTTTGAAAAAGTTATCCTTAAAAAAGTGGAAAATAAAGAAATAACTACTCGTTCCACTACTACAATGGTGCAGCACGAAAGCAATGTAAACATCTTAAATGCTGTTAAAGATGTGAGCTGCAATACCCAAATTAATCAAAGCAACCCAATTATGTCTGCATGTCAAGGCCAAGTTCCATGTGGAAATGGAGTAAATGTTAATTTTGGAAAGGATCATGACTTGAAAGTAGTCTACTCTGAACCATCACAACCAGATAAAGTTTTGAAAAATAGTAGCATGGGTGTTTCAGCTAAGTCTGTTGGAAATACTGGTAATGGGAATGTTGGGTTGACTTCTTGCGCACCTTCTCAAGACACTGCAAAGGATATGCTAGATGTTGCTCGTCGAAGTTTCTTCCATAATGGCAGTTTCATCCAACAAGGAGGAAACATAACTCCTGGATGGAGTTTGAGTTTTGCAAATGAAGAGGATGCTTAAGAAGATATGGAAGATGCTATGGAAGAATCAGCTAAAGGTGAAAATGAAGTAATGGGGGATGACTCTAGCTCCGCTGCTGAAGAAATTGGTGTACCAAAAGACCTAGGTGGTGGTTGGTTGCCCCATGAATGATGCTATGGCAACTATTCCAAAAGCCAAAGCTATGTCTCCCCTTAACAACTGGTAGTATTTTTACAAGAAATGTCTCATACATCTAGTTCCCTAACAATAGATTTTTAGTATAATGGGATCACTTTGCTCAACTGGGATAATCTTCTAGCCAGGTGAAGGGTCACCAGTCACCAACTTGCCCAGGATTTTTGGTATAGACTATAGAGCAGTATGTAGATTTTTGTTAATATTTGTCATATCATTCAGGAAATTCATGCGGTTGGTCCTTTTGAGTCACTTGTATAGGCTATTTATTACAAAAAAAAAAAAGCGGTTATATTATAATAAAAATTGATTGAAAAGTAG

>Glyma01g40540.4   sequence type=transcript   gene model=Glyma01g40540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACTGGTTGAGTGCAGTCAACATATAATTTAGGCTATAACATAAAGTTTGATACCTTGTTTACAGATTCTTGGGATCCACCTTCTTACATGGCTCAGTTGTACCAAATGCAGCATCCTTATGTTTTCAGTTTTCCTGGTGCACCTAACTTTTCTTCAGCAACTCCTAAGGTGCCTGATCGCTTAGCTTCTGTAGAGCATTCTTCCCAAAATGGAATTATGAGACCACCTTCAAAACTTTCTCAGAAGCATCAACAACTTTGGGAAGCTCAGTCAGCGGAGAATGTTAAGCTGTGGAGTGTGATAAATAAATTGCAAGCTGAAGTTTCTGATTACAATGATCGGCTGAAGAAGCTTGAAGAAGAAGTATCCTCGTTCAAAAAGAAAGCAGAAGTGCCCACTAACAAAGTTATTGGGACAATTCCTGTATTAACAGTGCAACCAAAAAAGAGAGGAGGGCCTAAGAGATCATTGGCTTCAGTGGATCCATCATATGAGTCTCACCTCCCAGCTGGCGGTAAAAAGCCTGCACTAAGTAACTATCTGTATCAGAGTAAATCACCCTTTGGAGCAGTTAAATCACCCATTTTTGAAAAAGTTATCCTTAAAAAAGTGGAAAATAAAGAAATAACTACTCGTTCCACTACTACAATGGTGCAGCACGAAAGCAATGTAAACATCTTAAATGCTGTTAAAGATGTGAGCTGCAATACCCAAATTAATCAAAGCAACCCAATTATGTCTGCATGTCAAGGCCAAGTTCCATGTGGAAATGGAGTAAATGTTAATTTTGGAAAGGATCATGACTTGAAAGTAGTCTACTCTGAACCATCACAACCAGATAAAGTTTTGAAAAATAGTAGCATGGGTGTTTCAGCTAAGTCTGTTGGAAATACTGGTAATGGGAATGTTGGGTTGACTTCTTGCGCACCTTCTCAAGACACTGCAAAGGATATGCTAGATGTTGCTCGTCGAAGTTTCTTCCATAATGGCAGTTTCATCCAACAAGGAGGAAACATAACTCCTGGATGGAGTTTGAGTTTTGCAAATGAAGAGGATGCTTAAGAAGATATGGAAGATGCTATGGAAGAATCAGCTAAAGGTGAAAATGAAGTAATGGGGGATGACTCTAGCTCCGCTGCTGAAGAAATTGGTGTACCAAAAGACCTAGGTGGTGGTTGGTTGCCCCATGAATGATGCTATGGCAACTATTCCAAAAGCCAAAGCTATGTCTCCCCTTAACAACTGGTAGTATTTTTACAAGAAATGTCTCATACATCTAGTTCCCTAACAATAGATTTTTAGTATAATGGGATCACTTTGCTCAACTGGGATAATCTTCTAGCCAGGTGAAGGGTCACCAGTCACCAACTTGCCCAGGATTTTTGGTATAGACTATAGAGCAGTATGTAGATTTTTGTTAATATTTGTCATATCATTCAGGAAATTCATGCGGTTGGTCCTTTTGAGTCACTTGTATAGGCTATTTATTACAAAAAAAAAAAAGCGGTTATATTATAATAAAAATTGATTGAAAAGTAG

Coding sequences of Glyma01g40540

Limit To All Plant Sequences

>Glyma01g40540.2   sequence type=CDS   gene model=Glyma01g40540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCAACTCAAATCAGCAACAACAACCTCCAATTGTTCAATGGCCTTGTACTCCTCAAAATGCCACAGAACAGTTCTTGACAATGCACTTCCCCACCCAAGCATCACCACCTGGTGCCTTAAATCAATGGCAGCAGTTTCAATATCAGCAGGTATTTGCACAGACAGCATCATCCTTTTGGCAACCGCAACCGCCAGGAGCAAATGTCCCTTCATTCTTTCAGCCCTTTACTGATACTGGCTTTCAAGGAGGACCTTCCTCAACAATACAGACACTACTTCCCAATATGTCTTGCCATTACACATTTCCTGGCTTTCCACATTCTTGGGATCCACCTTCTTACATGGCTCAGTTGTACCAAATGCAGCATCCTTATGTTTTCAGTTTTCCTGGTGCACCTAACTTTTCTTCAGCAACTCCTAAGGTGCCTGATCGCTTAGCTTCTGTAGAGCATTCTTCCCAAAATGGAATTATGAGACCACCTTCAAAACTTTCTCAGAAGCATCAACAACTTTGGGAAGCTCAGTCAGCGGAGAATGTTAAGCTGTGGAGTGTGATAAATAAATTGCAAGCTGAAGTTTCTGATTACAATGATCGGCTGAAGAAGCTTGAAGAAGAAGTATCCTCGTTCAAAAAGAAAGCAGAAGTGCCCACTAACAAAGTTATTGGGACAATTCCTGTATTAACAGTGCAACCAAAAAAGAGAGGAGGGCCTAAGAGATCATTGGCTTCAGTGGATCCATCATATGAGTCTCACCTCCCAGCTGGCGGTAAAAAGCCTGCACTAAGTAACTATCTGTATCAGAGTAAATCACCCTTTGGAGCAGTTAAATCACCCATTTTTGAAAAAGTTATCCTTAAAAAAGTGGAAAATAAAGAAATAACTACTCGTTCCACTACTACAATGGTGCAGCACGAAAGCAATGTAAACATCTTAAATGCTGTTAAAGATGTGAGCTGCAATACCCAAATTAATCAAAGCAACCCAATTATGTCTGCATGTCAAGGCCAAGTTCCATGTGGAAATGGAGTAAATGTTAATTTTGGAAAGGATCATGACTTGAAAGTAGTCTACTCTGAACCATCACAACCAGATAAAGTTTTGAAAAATAGTAGCATGGGTGTTTCAGCTAAGTCTGTTGGAAATACTGGTAATGGGAATGTTGGGTTGACTTCTTGCGCACCTTCTCAAGACACTGCAAAGGATATGCTAGATGTTGCTCGTCGAAGTTTCTTCCATAATGGCAGTTTCATCCAACAAGGAGGAAACATAACTCCTGGATGGAGTTTGAGTTTTGCAAATGAAGAGGATGCTTAA

>Glyma01g40540.3   sequence type=CDS   gene model=Glyma01g40540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCTTCATTCTTTCAGCCCTTTACTGATACTGGCTTTCAAGGAGGACCTTCCTCAACAATACAGACACTACTTCCCAATATGTCTTGCCATTACACATTTCCTGGCTTTCCACCATCCTTATGTTTTCAGTTTTCCTGGTGCACCTAACTTTTCTTCAGCAACTCCTAAGGTGCCTGATCGCTTAGCTTCTGTAGAGCATTCTTCCCAAAATGGAATTATGAGACCACCTTCAAAACTTTCTCAGAAGCATCAACAACTTTGGGAAGCTCAGTCAGCGGAGAATGTTAAGCTGTGGAGTGTGATAAATAAATTGCAAGCTGAAGTTTCTGATTACAATGATCGGCTGAAGAAGCTTGAAGAAGAAGTATCCTCGTTCAAAAAGAAAGCAGAAGTGCCCACTAACAAAGTTATTGGGACAATTCCTGTATTAACAGTGCAACCAAAAAAGAGAGGAGGGCCTAAGAGATCATTGGCTTCAGTGGATCCATCATATGAGTCTCACCTCCCAGCTGGCGGTAAAAAGCCTGCACTAAGTAACTATCTGTATCAGAGTAAATCACCCTTTGGAGCAGTTAAATCACCCATTTTTGAAAAAGTTATCCTTAAAAAAGTGGAAAATAAAGAAATAACTACTCGTTCCACTACTACAATGGTGCAGCACGAAAGCAATGTAAACATCTTAAATGCTGTTAAAGATGTGAGCTGCAATACCCAAATTAATCAAAGCAACCCAATTATGTCTGCATGTCAAGGCCAAGTTCCATGTGGAAATGGAGTAAATGTTAATTTTGGAAAGGATCATGACTTGAAAGTAGTCTACTCTGAACCATCACAACCAGATAAAGTTTTGAAAAATAGTAGCATGGGTGTTTCAGCTAAGTCTGTTGGAAATACTGGTAATGGGAATGTTGGGTTGACTTCTTGCGCACCTTCTCAAGACACTGCAAAGGATATGCTAGATGTTGCTCGTCGAAGTTTCTTCCATAATGGCAGTTTCATCCAACAAGGAGGAAACATAACTCCTGGATGGAGTTTGAGTTTTGCAAATGAAGAGGATGCTTAA

>Glyma01g40540.4   sequence type=CDS   gene model=Glyma01g40540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAGTTGTACCAAATGCAGCATCCTTATGTTTTCAGTTTTCCTGGTGCACCTAACTTTTCTTCAGCAACTCCTAAGGTGCCTGATCGCTTAGCTTCTGTAGAGCATTCTTCCCAAAATGGAATTATGAGACCACCTTCAAAACTTTCTCAGAAGCATCAACAACTTTGGGAAGCTCAGTCAGCGGAGAATGTTAAGCTGTGGAGTGTGATAAATAAATTGCAAGCTGAAGTTTCTGATTACAATGATCGGCTGAAGAAGCTTGAAGAAGAAGTATCCTCGTTCAAAAAGAAAGCAGAAGTGCCCACTAACAAAGTTATTGGGACAATTCCTGTATTAACAGTGCAACCAAAAAAGAGAGGAGGGCCTAAGAGATCATTGGCTTCAGTGGATCCATCATATGAGTCTCACCTCCCAGCTGGCGGTAAAAAGCCTGCACTAAGTAACTATCTGTATCAGAGTAAATCACCCTTTGGAGCAGTTAAATCACCCATTTTTGAAAAAGTTATCCTTAAAAAAGTGGAAAATAAAGAAATAACTACTCGTTCCACTACTACAATGGTGCAGCACGAAAGCAATGTAAACATCTTAAATGCTGTTAAAGATGTGAGCTGCAATACCCAAATTAATCAAAGCAACCCAATTATGTCTGCATGTCAAGGCCAAGTTCCATGTGGAAATGGAGTAAATGTTAATTTTGGAAAGGATCATGACTTGAAAGTAGTCTACTCTGAACCATCACAACCAGATAAAGTTTTGAAAAATAGTAGCATGGGTGTTTCAGCTAAGTCTGTTGGAAATACTGGTAATGGGAATGTTGGGTTGACTTCTTGCGCACCTTCTCAAGACACTGCAAAGGATATGCTAGATGTTGCTCGTCGAAGTTTCTTCCATAATGGCAGTTTCATCCAACAAGGAGGAAACATAACTCCTGGATGGAGTTTGAGTTTTGCAAATGAAGAGGATGCTTAA

Predicted protein sequences of Glyma01g40540

Limit To All Plant Sequences

>Glyma01g40540.2   sequence type=predicted peptide   gene model=Glyma01g40540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPNSNQQQQPPIVQWPCTPQNATEQFLTMHFPTQASPPGALNQWQQFQYQQVFAQTASSFWQPQPPGANVPSFFQPFTDTGFQGGPSSTIQTLLPNMSCHYTFPGFPHSWDPPSYMAQLYQMQHPYVFSFPGAPNFSSATPKVPDRLASVEHSSQNGIMRPPSKLSQKHQQLWEAQSAENVKLWSVINKLQAEVSDYNDRLKKLEEEVSSFKKKAEVPTNKVIGTIPVLTVQPKKRGGPKRSLASVDPSYESHLPAGGKKPALSNYLYQSKSPFGAVKSPIFEKVILKKVENKEITTRSTTTMVQHESNVNILNAVKDVSCNTQINQSNPIMSACQGQVPCGNGVNVNFGKDHDLKVVYSEPSQPDKVLKNSSMGVSAKSVGNTGNGNVGLTSCAPSQDTAKDMLDVARRSFFHNGSFIQQGGNITPGWSLSFANEEDA*

>Glyma01g40540.3   sequence type=predicted peptide   gene model=Glyma01g40540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLHSFSPLLILAFKEDLPQQYRHYFPICLAITHFLAFHHPYVFSFPGAPNFSSATPKVPDRLASVEHSSQNGIMRPPSKLSQKHQQLWEAQSAENVKLWSVINKLQAEVSDYNDRLKKLEEEVSSFKKKAEVPTNKVIGTIPVLTVQPKKRGGPKRSLASVDPSYESHLPAGGKKPALSNYLYQSKSPFGAVKSPIFEKVILKKVENKEITTRSTTTMVQHESNVNILNAVKDVSCNTQINQSNPIMSACQGQVPCGNGVNVNFGKDHDLKVVYSEPSQPDKVLKNSSMGVSAKSVGNTGNGNVGLTSCAPSQDTAKDMLDVARRSFFHNGSFIQQGGNITPGWSLSFANEEDA*

>Glyma01g40540.4   sequence type=predicted peptide   gene model=Glyma01g40540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQLYQMQHPYVFSFPGAPNFSSATPKVPDRLASVEHSSQNGIMRPPSKLSQKHQQLWEAQSAENVKLWSVINKLQAEVSDYNDRLKKLEEEVSSFKKKAEVPTNKVIGTIPVLTVQPKKRGGPKRSLASVDPSYESHLPAGGKKPALSNYLYQSKSPFGAVKSPIFEKVILKKVENKEITTRSTTTMVQHESNVNILNAVKDVSCNTQINQSNPIMSACQGQVPCGNGVNVNFGKDHDLKVVYSEPSQPDKVLKNSSMGVSAKSVGNTGNGNVGLTSCAPSQDTAKDMLDVARRSFFHNGSFIQQGGNITPGWSLSFANEEDA*

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