Report for Sequence Feature Glyma01g40510
Feature Type: gene_model
Chromosome: Gm01
Start: 52240955
stop: 52243211
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma01g40510
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G65720 AT
Annotation by Michelle Graham. TAIR10: nitrogen fixation S (NIFS)-like 1 | chr5:26296349-26297710 FORWARD LENGTH=453
SoyBase E_val: 0 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0016226 GO-bp
Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
GO:0008483 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transaminase activity
SoyBase N/A ISS
GO:0030170 GO-mf
Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding
SoyBase N/A ISS
GO:0031071 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cysteine desulfurase activity
SoyBase N/A ISS
KOG1549
KOG
Cysteine desulfurase NFS1
JGI ISS
PTHR11601 Panther
CYSTEINE DESULFURYLASE
JGI ISS
PF00266 PFAM
Aminotransferase class-V
JGI ISS
UniRef100_G7K149 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Cysteine desulfurase n=1 Tax=Medicago truncatula RepID=G7K149_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1J9H6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9H6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma01g40510
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma01g40510
Paralog Evidence Comments
Glyma11g04800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma01g40510 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.01g197100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma01g40510
Transcripts of Glyma01g40510
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g40510.2 sequence type=transcript gene model=Glyma01g40510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CGACGTCGTCCACTGTCAAACCCCATCCGCGATCATATAATAGATAAGTTAAGTCGGTTACACTCAACTAATTCTCCACCGTCAGATTCCCTCTGTTCGTCTTTATCTTCAAAAGCCCCAAATCAAATCCGAATAATAATTAGGTTTTTCTCTTCGTCTTTCATTTTCTTATTCTTCACCAAACCGATAAGCAGGAAATAGCTAGTGAGACTAATCCATCGCACAAACCTCACCGATTCAATGACCTCTAAGCTAATTGCTTCCAATCTCCGTCACCAAATCACAAAATCAGCCCAAAACCTCCGCCGCCAGCTCCTATCCACGGCGGCGGCGGCGGCAGTGCCGGAACACGATGGGAACAACTCCAACTCTTTGGGAATGACGATGAAGGGCGTTCGAATCTCCGGAAGACCCCTTTACCTGGACGTGCAGGCAACATCTCCGGTGGACCCGCGCGTACTTGACGCGATGCTCCCTTTCTACATCTCTCGCTACGGAAACCCTCACTCTCGCACCCACTTCTACGGCTGGGAATCCGACGAGGCCGTGGAGCACGCGCGCGCTCAGGTCGCTTCCCTCATCGGCGCTTCCCCCAAGGAGATAGTCTTCACCTCCGGCGCCACCGAGTCCAACAACATCTCCGTCAAGGGCGTCATGCACTTCTACAAGGACAAGAAGCGCCACGTCATAACCACGCAAACGGAGCACAAGTGCGTCCTCGACTCCTGCCGCCACCTTCAGCAGGAGGGTTTCGATGTTACCTATCTTCCCGTTGAATCTGACGGGTTGATTGATTTGGATAAGCTTAGGGCTGCGATTAGGCCTGATACCGGTCTCGTTTCGGTTATGGCGGTGAACAATGAAATTGGAGTGGTTCAACCGATGGAGAGAATTGGGAGGATTTGCAAGGAGTTTAATGTGCCTTTCCACACTGATGCAGCTCAGGCTTTGGGGAAGATTCCCATTGATGTGGAGAAGTGGAATGTGAGTTTGATGTCATTGAGTGGGCATAAGATTTATGGCCCTAAGGGGGTTGGGGCTTTGTATATGCGTAGGAGGCCCAGGATTAGGGTTGAGCCTCAGATGAATGGGGGTGGGCAAGAGAGGGGAATTAGGAGTGGGACTGTTCCCACTCCTTTGGTTGTGGGGATGGGTTCCGCGTGTGAGGTGGCGAAGAACGAGATGGAGTATGATGAGAAGAGGATTTCTGCTTTGCAGCAGAGGCTGCTTAATGGGATTAGAGAGAAGCTTGATGGGGTGGTGGTGAATGGGAGCTTGGAGAGGCGCTATGTGGGGAATTTGAATTTGTCATTTGCTTATGTTGAAGGGGAGAGCTTGCTCATGGGTTTGAAGGAGGTGGCTGTGTCCAGTGGCAGTGCCTGCACTAGTGCTAGTTTGGAGCCTTCGTATGTGTTGAGGGCGTTGGGAGTTGAGGAGGACATGGCTCACACTTCTATTAGGTTTGGAATTGGGAGGTTCACTACAGAGGCCGAGATTGATAGGGCGGTTGAGCTCACCGTTCAGCAGGTGGAGAAGTTGAGGGAAATGAGTCCGCTTTATGAAATGGTCAAGGAAGGGATCAACATCAAGGATATTCAATGGGCACAACACTGATTATCAAGCTTTATTATTTAGTTATATTGTATCCTTGATGTTACATTACAATTAAGAATTTACCCTGGTAGAGCTATTTATTAGGTATACACCTTTTATTTAAATGATTGGTAGTTTTACTTTTGTCTGAGGAAAGACATGCTTTGGTACTTTATGGGCTAACCAATGTTGGTGTTATTATGGTTTC
Coding sequences of Glyma01g40510
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma01g40510.1 sequence type=CDS gene model=Glyma01g40510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACCTCTAAGCTAATTGCTTCCAATCTCCGTCACCAAATCACAAAATCAGCCCAAAACCTCCGCCGCCAGCTCCTATCCACGGCGGCGGCGGCGGCAGTGCCGGAACACGATGGGAACAACTCCAACTCTTTGGGAATGACGATGAAGGGCGTTCGAATCTCCGGAAGACCCCTTTACCTGGACGTGCAGGCAACATCTCCGGTGGACCCGCGCGTACTTGACGCGATGCTCCCTTTCTACATCTCTCGCTACGGAAACCCTCACTCTCGCACCCACTTCTACGGCTGGGAATCCGACGAGGCCGTGGAGCACGCGCGCGCTCAGGTCGCTTCCCTCATCGGCGCTTCCCCCAAGGAGATAGTCTTCACCTCCGGCGCCACCGAGTCCAACAACATCTCCGTCAAGGGCGTCATGCACTTCTACAAGGACAAGAAGCGCCACGTCATAACCACGCAAACGGAGCACAAGTGCGTCCTCGACTCCTGCCGCCACCTTCAGCAGGAGGGTTTCGATGTTACCTATCTTCCCGTTGAATCTGACGGGTTGATTGATTTGGATAAGCTTAGGGCTGCGATTAGGCCTGATACCGGTCTCGTTTCGGTTATGGCGGTGAACAATGAAATTGGAGTGGTTCAACCGATGGAGAGAATTGGGAGGATTTGCAAGGAGTTTAATGTGCCTTTCCACACTGATGCAGCTCAGGCTTTGGGGAAGATTCCCATTGATGTGGAGAAGTGGAATGTGAGTTTGATGTCATTGAGTGGGCATAAGATTTATGGCCCTAAGGGGGTTGGGGCTTTGTATATGCGTAGGAGGCCCAGGATTAGGGTTGAGCCTCAGATGAATGGGGGTGGGCAAGAGAGGGGAATTAGGAGTGGGACTGTTCCCACTCCTTTGGTTGTGGGGATGGGTTCCGCGTGTGAGGTGGCGAAGAACGAGATGGAGTATGATGAGAAGAGGATTTCTGCTTTGCAGCAGAGGCTGCTTAATGGGATTAGAGAGAAGCTTGATGGGGTGGTGGTGAATGGGAGCTTGGAGAGGCGCTATGTGGGGAATTTGAATTTGTCATTTGCTTATGTTGAAGGGGAGAGCTTGCTCATGGGTTTGAAGGAGGTGGCTGTGTCCAGTGGCAGTGCCTGCACTAGTGCTAGTTTGGAGCCTTCGTATGTGTTGAGGGCGTTGGGAGTTGAGGAGGACATGGCTCACACTTCTATTAGGTTTGGAATTGGGAGGTTCACTACAGAGGCCGAGATTGATAGGGCGGTTGAGCTCACCGTTCAGCAGGTGGAGAAGTTGAGGGAAATGAGTCCGCTTTATGAAATGGTCAAGGAAGGGATCAACATCAAGGATATTCAATGGGCACAACACTGA
>Glyma01g40510.2 sequence type=CDS gene model=Glyma01g40510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACCTCTAAGCTAATTGCTTCCAATCTCCGTCACCAAATCACAAAATCAGCCCAAAACCTCCGCCGCCAGCTCCTATCCACGGCGGCGGCGGCGGCAGTGCCGGAACACGATGGGAACAACTCCAACTCTTTGGGAATGACGATGAAGGGCGTTCGAATCTCCGGAAGACCCCTTTACCTGGACGTGCAGGCAACATCTCCGGTGGACCCGCGCGTACTTGACGCGATGCTCCCTTTCTACATCTCTCGCTACGGAAACCCTCACTCTCGCACCCACTTCTACGGCTGGGAATCCGACGAGGCCGTGGAGCACGCGCGCGCTCAGGTCGCTTCCCTCATCGGCGCTTCCCCCAAGGAGATAGTCTTCACCTCCGGCGCCACCGAGTCCAACAACATCTCCGTCAAGGGCGTCATGCACTTCTACAAGGACAAGAAGCGCCACGTCATAACCACGCAAACGGAGCACAAGTGCGTCCTCGACTCCTGCCGCCACCTTCAGCAGGAGGGTTTCGATGTTACCTATCTTCCCGTTGAATCTGACGGGTTGATTGATTTGGATAAGCTTAGGGCTGCGATTAGGCCTGATACCGGTCTCGTTTCGGTTATGGCGGTGAACAATGAAATTGGAGTGGTTCAACCGATGGAGAGAATTGGGAGGATTTGCAAGGAGTTTAATGTGCCTTTCCACACTGATGCAGCTCAGGCTTTGGGGAAGATTCCCATTGATGTGGAGAAGTGGAATGTGAGTTTGATGTCATTGAGTGGGCATAAGATTTATGGCCCTAAGGGGGTTGGGGCTTTGTATATGCGTAGGAGGCCCAGGATTAGGGTTGAGCCTCAGATGAATGGGGGTGGGCAAGAGAGGGGAATTAGGAGTGGGACTGTTCCCACTCCTTTGGTTGTGGGGATGGGTTCCGCGTGTGAGGTGGCGAAGAACGAGATGGAGTATGATGAGAAGAGGATTTCTGCTTTGCAGCAGAGGCTGCTTAATGGGATTAGAGAGAAGCTTGATGGGGTGGTGGTGAATGGGAGCTTGGAGAGGCGCTATGTGGGGAATTTGAATTTGTCATTTGCTTATGTTGAAGGGGAGAGCTTGCTCATGGGTTTGAAGGAGGTGGCTGTGTCCAGTGGCAGTGCCTGCACTAGTGCTAGTTTGGAGCCTTCGTATGTGTTGAGGGCGTTGGGAGTTGAGGAGGACATGGCTCACACTTCTATTAGGTTTGGAATTGGGAGGTTCACTACAGAGGCCGAGATTGATAGGGCGGTTGAGCTCACCGTTCAGCAGGTGGAGAAGTTGAGGGAAATGAGTCCGCTTTATGAAATGGTCAAGGAAGGGATCAACATCAAGGATATTCAATGGGCACAACACTGA
Predicted protein sequences of Glyma01g40510
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma01g40510.1 sequence type=predicted peptide gene model=Glyma01g40510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTSKLIASNLRHQITKSAQNLRRQLLSTAAAAAVPEHDGNNSNSLGMTMKGVRISGRPLYLDVQATSPVDPRVLDAMLPFYISRYGNPHSRTHFYGWESDEAVEHARAQVASLIGASPKEIVFTSGATESNNISVKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFDVTYLPVESDGLIDLDKLRAAIRPDTGLVSVMAVNNEIGVVQPMERIGRICKEFNVPFHTDAAQALGKIPIDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPQMNGGGQERGIRSGTVPTPLVVGMGSACEVAKNEMEYDEKRISALQQRLLNGIREKLDGVVVNGSLERRYVGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVEEDMAHTSIRFGIGRFTTEAEIDRAVELTVQQVEKLREMSPLYEMVKEGINIKDIQWAQH*
>Glyma01g40510.2 sequence type=predicted peptide gene model=Glyma01g40510 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTSKLIASNLRHQITKSAQNLRRQLLSTAAAAAVPEHDGNNSNSLGMTMKGVRISGRPLYLDVQATSPVDPRVLDAMLPFYISRYGNPHSRTHFYGWESDEAVEHARAQVASLIGASPKEIVFTSGATESNNISVKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFDVTYLPVESDGLIDLDKLRAAIRPDTGLVSVMAVNNEIGVVQPMERIGRICKEFNVPFHTDAAQALGKIPIDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPQMNGGGQERGIRSGTVPTPLVVGMGSACEVAKNEMEYDEKRISALQQRLLNGIREKLDGVVVNGSLERRYVGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVEEDMAHTSIRFGIGRFTTEAEIDRAVELTVQQVEKLREMSPLYEMVKEGINIKDIQWAQH*