Glyma01g40430 - SoyBase

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Report for Sequence Feature Glyma01g40430

Feature Type:	gene_model
Chromosome:	Gm01
Start:	52182726
stop:	52187816
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g40430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65770	AT	Annotation by Michelle Graham. TAIR10: little nuclei4 \| chr5:26311587-26315610 FORWARD LENGTH=1010	SoyBase	E_val: 6.00E-147	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
UniRef100_B9SX77	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Filamin-A-interacting protein, putative n=1 Tax=Ricinus communis RepID=B9SX77_RICCO	SoyBase	E_val: 7.00E-166	ISS
UniRef100_I1J9H3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1J9H3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g40430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g40430

Paralog	Evidence	Comments
Glyma11g04855	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g40430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g196400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g40430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g40430

Limit To All Plant Sequences

>Glyma01g40430.2   sequence type=CDS   gene model=Glyma01g40430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCTGTCTCATCTTCGAGAGAAAGGAATTGGCTTCCAAGTATGAGCAAGTTAAGGCTTCGATTGATTCATCCGAGTTTATGTGTAAGCATGATTCAACCATGACTTTGTCTGCACTAATTGAAGCAAGGAAACGGGAAGAAAGCTTGAAGAAGGCAGTAGGAGTCACAGAGGCATGTATACTTGAGAAGGCCTTGCTTGAGATGCGTACTGAATGTGTTGTATTTCTGCTTGAGAGTAAAGTTTCTGAAGCACACCAATTGATAGATGAAGCGCAGAAAAAATCAACTGAGGCTGAGGCTGAGGCCAAGCTGCTTGCTGCGGCATCCTTTCAGGCAAAGGCTTGTGGATATAACGGTGTAGCAGGCAGGAAGCTTCGGGATGTTGAAGCACGTGAAGATGAACTCAAGTGGCAAATCATATCTTTCAAATCAGAGTATGTGTTTAAGGAGATAATTCGTGAAAGGCAATCCATTTCCGAAAGGCAAGAAAGTTTGCAGCAAGAACAGGAAAGGTTATTGCAATCACAAGCCTTGCTCAACCAGAGAGAGGACCACCTTTTTATTAGATCTCAGGAGTTAGATAGCCTTCAAAAAGAGTTGGAGGACATTGGTAAACGGGAATCTGAGCTGAACAAGAAAGAGCGAGAATTGCTTGATTTTCAAGTGAAACTTGCTAGTCGAGAATCTCTGAGCTACAAATTGGTTGAGAATGAAATTGAGATGAGAAGACGGGCTTGGGAATTGAAGGAAGTAGATCTTACACAACGAGAGGAGCAACTCCTGGAAAGGAAGCATGAGTTGGAAATTCTGTCAAGGACACTGGGTGAGAAGGAGAAGGATCTGCTGGATATGTCAAGTGCTCTTAAAGAAAAAGATCAAAGCCTGAAAGCTTCTGAAAAGGAATTAGAGTTAAATAAAGTTCTTTTGCAAAAGGAGAAAGAAGAGATAAACATAACAAAGTTAGATGTACAGAAGTCTTTGTCAGTTTTGGAAGTGAAACTAAAGGAAGAAATTGCTCTTGTAAGATCTCAGAAGTTGGAGATTGTAGCGGAGGCAGATAAGCTGAAAGCAGAGAAAGCAAAGTTTGAAGTTGAGTGGGAGCTTCTTGATGAAAAGAAAGAAGAGCTGCAGAAAGAAGCAGAATACATAGCAGAGGCGAAGAAGGCAGTTTCGGCTTTCATTAAGGAGTATGACAAGCTAAGACAAGAGAAGGAAAATATGCGTGATCAGTATAAACGAGACTTAGAATCGGTTACCTGTGAACGAGAAGAGTTCATGACCAAGATGGCTGAGAGGCCAATGACTATGGACCTGCAAGACACTAGAACGCCATTGCCAAACTCACATGAACATGACGAGTGGTTTGGCAAGATGCAGCAAGAGCGTGCAGATTTCTTGAGGGACGTTGAGATGCAGAAGAGGAATATGAATACCCTTATCGAGAAGAGGCACGAAGAAATAGAAAGTTGTTTGAAGGAAAGAGAAAAATCTTTTGAAGAAGAAAAGAACAATGAACTAGAATATATTAATGCTCTTAAGGAAAAAGCAGCAAAAGAGTCCCAACAGGTTTCCTTTGAGATGAGAAGACTTGAAACTGAGCGAGCAGAGATAAGTTTGGACCGTGAACAGAGAAAGAAGGAATGGGCTGAGCTAAATAAGTGCATTGAGGAACTCAAGGTTCAAAGGGATAAGCTCCAAAATCAGAGAGAACTGATCTTAAAATTGTCTTTGATGATATTGCTGACTGAGTTTTTTAATTCTGATATGGAGTCTATGAAGAAAAAATTGAAGCTGCGGACTCTTAAGCATGATGATCATTTAAATTCCCCCAAGGAAATAGAGGCTAATAAGAACAGCAACGGGTTTGACACACCATTTGTGCAAAAGTCATCCGTTGTTTCTCCTCCTAGCCCCGTTCGATCCTCATGGATCAAACGATGCACAGAACTACACTTGACGAATGACAACTCTCTTGATAATGTTGGCAAAAGGCAGCAAAGGAGATTTTCTTTTGGAGAACCGAAAGTAATACTTGACGTACCATCTCCAGCCGAAGATGTTTACAGAGTAAGTGATTTTGAATCTGAAATTAAGAAACATGTGAACCGAACTGTTCCCTTGGTTTGGGATGGATGTAATGTGAGCAAATGGAAAAGAGGCCGTGGGAACTTTGGAATTGGAGATCCACTTCAAGATACACTGAAGGATAAGAAACTGCGATCAGAAGACAACCAATAG

Predicted protein sequences of Glyma01g40430

Limit To All Plant Sequences

>Glyma01g40430.2   sequence type=predicted peptide   gene model=Glyma01g40430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCLIFERKELASKYEQVKASIDSSEFMCKHDSTMTLSALIEARKREESLKKAVGVTEACILEKALLEMRTECVVFLLESKVSEAHQLIDEAQKKSTEAEAEAKLLAAASFQAKACGYNGVAGRKLRDVEAREDELKWQIISFKSEYVFKEIIRERQSISERQESLQQEQERLLQSQALLNQREDHLFIRSQELDSLQKELEDIGKRESELNKKERELLDFQVKLASRESLSYKLVENEIEMRRRAWELKEVDLTQREEQLLERKHELEILSRTLGEKEKDLLDMSSALKEKDQSLKASEKELELNKVLLQKEKEEINITKLDVQKSLSVLEVKLKEEIALVRSQKLEIVAEADKLKAEKAKFEVEWELLDEKKEELQKEAEYIAEAKKAVSAFIKEYDKLRQEKENMRDQYKRDLESVTCEREEFMTKMAERPMTMDLQDTRTPLPNSHEHDEWFGKMQQERADFLRDVEMQKRNMNTLIEKRHEEIESCLKEREKSFEEEKNNELEYINALKEKAAKESQQVSFEMRRLETERAEISLDREQRKKEWAELNKCIEELKVQRDKLQNQRELILKLSLMILLTEFFNSDMESMKKKLKLRTLKHDDHLNSPKEIEANKNSNGFDTPFVQKSSVVSPPSPVRSSWIKRCTELHLTNDNSLDNVGKRQQRRFSFGEPKVILDVPSPAEDVYRVSDFESEIKKHVNRTVPLVWDGCNVSKWKRGRGNFGIGDPLQDTLKDKKLRSEDNQ*

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