Glyma01g40210 - SoyBase

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Report for Sequence Feature Glyma01g40210

Feature Type:	gene_model
Chromosome:	Gm01
Start:	51983085
stop:	51986290
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g40210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49870	AT	Annotation by Michelle Graham. TAIR10: ADP-ribosylation factor-like A1C \| chr3:18492674-18494021 REVERSE LENGTH=184	SoyBase	E_val: 8.00E-124	ISS
GO:0006661	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol biosynthetic process	SoyBase	N/A	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0051607	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to virus	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0075	KOG	GTP-binding ADP-ribosylation factor-like protein	JGI		ISS
PTHR11711	Panther	ARF-RELATED	JGI		ISS
PTHR11711:SF20	Panther	ADP-RIBOSYLATION FACTOR-RELATED	JGI		ISS
PF00025	PFAM	ADP-ribosylation factor family	JGI		ISS
UniRef100_C6TG08	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TG08_SOYBN	SoyBase	E_val: 3.00E-132	ISS
UniRef100_G7K2H2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ADP-RIBOSYLATION FACTOR-like protein n=1 Tax=Medicago truncatula RepID=G7K2H2_MEDTR	SoyBase	E_val: 1.00E-130	ISS

Expression Patterns of Glyma01g40210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma01g40210 not represented in the dataset	Glyma01g40210 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g40210

Paralog	Evidence	Comments
Glyma11g05080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g40210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g194500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g40210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma01g40210

Limit To All Plant Sequences

>Glyma01g40210.2   sequence type=transcript   gene model=Glyma01g40210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATAAGAGTGCTATAAAGAGTGGGAAAGGAGGTAGGAGAGGAAGAGAGAAAAGTGAATTGGATTGCATCTCTCGCTTTGTGTTGGAAGAGGGGAATCGTAGATCTGATTTCTTTCTTTCTTTTAATAATAATTTTGTGATCAGAATTATTGAGCTGAAGAAAAGACAATGGGATTGTGGGAAGCTTTTCTCAATTGGCTACGCAGCCTTTTCTTCAAGCAGGAAATGGAGTTATCTCTAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTACTGGTGGATATAGTGAGGACATGATTCCAACTGTGGGATTCAATATGAGGAAAGTGACAAAAGGGAATGTTACAATAAAGTTATGGGATCTTGGAGGACAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTGTATGTAACAAACTTCTTATCTTCTTTTGACTTTGAAGATTCTTCTCTACCTACAGACATGAACATGTGCATATACGTGTTTCTCATAGCAGTATATTTTAGATGCATATACTGATACAGGTTTAACTGATCAATGCATACATGTACACAAATTTATATGTATATTTGTAGAATTGTGTTGGCTATCAACTTTGTACAACGATCATGTTGTCCACATGGTTT

>Glyma01g40210.3   sequence type=transcript   gene model=Glyma01g40210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTTATACATCGCCTTAAGATGAAATAAAAAAAGTTTATGCCTTTTCTTCAAGCAGGAAATGGAGTTATCTCTAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTACTGGTGGATATAGTGAGGACATGATTCCAACTGTGGGATTCAATATGAGGAAAGTGACAAAAGGGAATGTTACAATAAAGTTATGGGATCTTGGAGGACAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGAGCTTCATGATTTGCTGAGCAAACCTTCATTGAGTGGCATCCCTTTGCTGGTATTGGGGAACAAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATGCAAAAACTCGACCAACATCGACTCTGTTATTGACTGGCTTGTAAAGCATTCCAAATCAAAGAGCTGAGAACCTACTTTCTGTTTTGAATTCTAATGCAATTTACGGGTAACATTTTCTGGATTTACTAGAGGCATTTGCATGTCTAACTCGTTTGCTGATTGATTTATTCATCCCTTTTGTCAGATGCTTTGTAATATAATATCATATCATTCTTGTCCGATAGGGAATTAAACGGGATGACATACATGTGAAGGGTTACTTTATGAGCAAATTATATCGTGTCATAGGAGTAGCTATATCATTAAAAATTCACTGAACTGCCATGAGAACTGATCTTTTTATCGTTGTAAATTAGATTGGATATTAGATTCTTTCGAAGGACCCAGTAGCGCGTGTCCTTACGCTAATTCCATGAGTTTGCCAAACATGAACAAATTCAGCTGCGTTCTTTGTGCTGTCACT

Coding sequences of Glyma01g40210

Limit To All Plant Sequences

>Glyma01g40210.1   sequence type=CDS   gene model=Glyma01g40210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATTGTGGGAAGCTTTTCTCAATTGGCTACGCAGCCTTTTCTTCAAGCAGGAAATGGAGTTATCTCTAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTACTGGTGGATATAGTGAGGACATGATTCCAACTGTGGGATTCAATATGAGGAAAGTGACAAAAGGGAATGTTACAATAAAGTTATGGGATCTTGGAGGACAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGAGCTTCATGATTTGCTGAGCAAACCTTCATTGAGTGGCATCCCTTTGCTGGTATTGGGGAACAAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATGCAAAAACTCGACCAACATCGACTCTGTTATTGACTGGCTTGTAAAGCATTCCAAATCAAAGAGCTGA

>Glyma01g40210.2   sequence type=CDS   gene model=Glyma01g40210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATTGTGGGAAGCTTTTCTCAATTGGCTACGCAGCCTTTTCTTCAAGCAGGAAATGGAGTTATCTCTAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTACTGGTGGATATAGTGAGGACATGATTCCAACTGTGGGATTCAATATGAGGAAAGTGACAAAAGGGAATGTTACAATAAAGTTATGGGATCTTGGAGGACAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTGTATGTAACAAACTTCTTATCTTCTTTTGACTTTGAAGATTCTTCTCTACCTACAGACATGAACATGTGCATATACGTGTTTCTCATAGCAGTATATTTTAGATGCATATACTGA

>Glyma01g40210.3   sequence type=CDS   gene model=Glyma01g40210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTATCTCTAATAGGACTTCAGAATGCTGGGAAGACTTCCCTTGTAAATGTAGTTGCTACTGGTGGATATAGTGAGGACATGATTCCAACTGTGGGATTCAATATGAGGAAAGTGACAAAAGGGAATGTTACAATAAAGTTATGGGATCTTGGAGGACAACCTAGGTTCCGCAGCATGTGGGAACGTTACTGTCGTGCCGTTTCTGCTATTGTTTATGTTGTTGATGCGGCCGATCCAGATAACATTAGCATATCAAGAAGTGAGCTTCATGATTTGCTGAGCAAACCTTCATTGAGTGGCATCCCTTTGCTGGTATTGGGGAACAAGATTGACAAAGCGGAGGCTCTGTCTAAACAAGCACTGACCGACCAAATGGATTTGAAGTCAATTACTGACAGGGAAGTTTGCTGCTTCATGATCTCATGCAAAAACTCGACCAACATCGACTCTGTTATTGACTGGCTTGTAAAGCATTCCAAATCAAAGAGCTGA

Predicted protein sequences of Glyma01g40210

Limit To All Plant Sequences

>Glyma01g40210.1   sequence type=predicted peptide   gene model=Glyma01g40210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNISISRSELHDLLSKPSLSGIPLLVLGNKIDKAEALSKQALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS*

>Glyma01g40210.2   sequence type=predicted peptide   gene model=Glyma01g40210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVTNFLSSFDFEDSSLPTDMNMCIYVFLIAVYFRCIY*

>Glyma01g40210.3   sequence type=predicted peptide   gene model=Glyma01g40210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELSLIGLQNAGKTSLVNVVATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADPDNISISRSELHDLLSKPSLSGIPLLVLGNKIDKAEALSKQALTDQMDLKSITDREVCCFMISCKNSTNIDSVIDWLVKHSKSKS*

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