Glyma01g40180 - SoyBase

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Report for Sequence Feature Glyma01g40180

Feature Type:	gene_model
Chromosome:	Gm01
Start:	51965658
stop:	51969274
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma01g40180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G37650	AT	Annotation by Michelle Graham. TAIR10: GRAS family transcription factor \| chr4:17691871-17693466 FORWARD LENGTH=531	SoyBase	E_val: 0	ISS
GO:0007049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle	SoyBase	N/A	ISS
GO:0008356	GO-bp	Annotation by Michelle Graham. GO Biological Process: asymmetric cell division	SoyBase	N/A	ISS
GO:0009956	GO-bp	Annotation by Michelle Graham. GO Biological Process: radial pattern formation	SoyBase	N/A	ISS
GO:0032350	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hormone metabolic process	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0055072	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03514	PFAM	GRAS family transcription factor	JGI		ISS
UniRef100_G7K2I5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GRAS family transcription factor n=1 Tax=Medicago truncatula RepID=G7K2I5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1J9E7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J9E7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma01g40180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma01g40180

Paralog	Evidence	Comments
Glyma11g05110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma01g40180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g194200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma01g40180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma01g40180

Limit To All Plant Sequences

>Glyma01g40180.1   sequence type=CDS   gene model=Glyma01g40180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATACCACGTTGTTTAGGGTAGTGAGTAGTTTCCAACACCAACACCAACCCGATCACGATCAATCCCTCAACAACTCCACCACAAGCAGCAGCTCTCGATCCTCCAGACAACAACAAAACTATCCCTACCCACAAGAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTATCCTCGTCTTCTTCCAAGCACTATTGTCCCTATCAACCCCACCCTCCCTCCACTACCACCATCCACCACTCCTTCTCCCCCACTCCCTGCGACTTTGAATTCTCCGGCAAGTGGGCCCAGGACATCCTCCTCGAAACCGCACGGGCCGTGGCCGACAAGAACACCACGCGCCTCCAACAACTCATGTGGATGCTAAACGAGCTAAGCTCCCCCTACGGCGACACCGACCAGAAACTGGCCTCGTACTTCCTCCAAGCCTTCTTCAGCCGCATCTCCCAAGCCGGGGACCGAACCTACCGAACCTTAGCTTCGGCCTCGGAGAAAACATGCTCCTTCGAATCGACCCGCAAGACGGTGCTCAAGTTCCAGGAGGTGAGTCCCTGGACAACCTTCGGCCACGTGGCGTCCAATGGCGCCATCTTGGAAGCCTTGGAAGGCGAGCCCAAACTACACATAATTGACATCAGCAACACCTATTGCACCCAATGGCCAACCCTCTTCGAAGCCTTGGCCACTCGAAATGACGACACTCCGCACCTCCGTTTAACCTCCGTCGTCACCGCTGACGCCACCGCGCAGAAACTCATGAAGGAAATCGGCGCCAGAATGGAGAAATTCGCCAGACTCATGGGCGTGCCCTTTAAATTCAACGTCGTTCATCACGTAGGTCAACTCTCTGACTTGGATTTCAGCATGTTGGACATTAAAGAAGACGAGGCCTTGGCGATTAACTGCGTCAACACCTTGCATTCGATCGCCGCCGTTGGGAACCACCGTGACGCGGTGATATCTTCCTTGAGGAGGTTGAAACCGAGGATCGTCACGCTGGTGGAGGAGGAGGCTGATTTGGACGTGGGATTGGAGGGGTTTGAGTTTGTGAAAGGGTTCGAAGAGTGTTTGAGGTGGTTTAGGGTTTACTTTGAGGCGTTGGACGAGAGTTTTCCGCGGACGAGCAACGAGAGGTTGTTGCTGGAGAGGGCGGCGGGGAGGGCGGTGGTGGACCTAGTGGCGTGTTCGGCGGCGGAGTCGGTGGAGCGGAGAGAGACGGCGGCGCGGTGGGCGAGGAGGATGCATGGAGGGGGGTTAAATACGGTGGCGTTTAGCGAAGAGGTTTGCGATGATGTGAGGGCGTTGCTGAGGAGGTATAGGGAGGGGTGGGCAATGACACAGTGCTCCGACGCCGGAATATTCCTGACGTGGAAGGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGGGCCTTGACGTAG

Predicted protein sequences of Glyma01g40180

Limit To All Plant Sequences

>Glyma01g40180.1   sequence type=predicted peptide   gene model=Glyma01g40180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTTLFRVVSSFQHQHQPDHDQSLNNSTTSSSSRSSRQQQNYPYPQEDEECFNFFMDEEDLSSSSSKHYCPYQPHPPSTTTIHHSFSPTPCDFEFSGKWAQDILLETARAVADKNTTRLQQLMWMLNELSSPYGDTDQKLASYFLQAFFSRISQAGDRTYRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGEPKLHIIDISNTYCTQWPTLFEALATRNDDTPHLRLTSVVTADATAQKLMKEIGARMEKFARLMGVPFKFNVVHHVGQLSDLDFSMLDIKEDEALAINCVNTLHSIAAVGNHRDAVISSLRRLKPRIVTLVEEEADLDVGLEGFEFVKGFEECLRWFRVYFEALDESFPRTSNERLLLERAAGRAVVDLVACSAAESVERRETAARWARRMHGGGLNTVAFSEEVCDDVRALLRRYREGWAMTQCSDAGIFLTWKEQPVVWASAWRALT*

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